Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population
Abstract
Sugarcane is an emerging dual-purpose biofuel crop for energy and sugar production, owing to its rapid growth rate, high sucrose storage in the stems, and high lignocellulosic yield. It has the highest biomass production reaching 1.9 billion tonnes in 2014 worldwide.
- Authors:
- Publication Date:
- Research Org.:
- Univ. of Illinois at Urbana-Champaign, IL (United States)
- Sponsoring Org.:
- USDOE Office of Energy Efficiency and Renewable Energy (EERE)
- OSTI Identifier:
- 1618566
- Alternate Identifier(s):
- OSTI ID: 1504904
- Grant/Contract Number:
- SC0010686
- Resource Type:
- Published Article
- Journal Name:
- BMC Genomics
- Additional Journal Information:
- Journal Name: BMC Genomics Journal Volume: 18 Journal Issue: 1; Journal ID: ISSN 1471-2164
- Publisher:
- Springer Science + Business Media
- Country of Publication:
- United Kingdom
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 09 BIOMASS FUELS; Saccharum; Biomass; Transcriptome; Cell wall metabolism; Hexose allocation
Citation Formats
Wai, Ching Man, Zhang, Jisen, Jones, Tyler C., Nagai, Chifumi, and Ming, Ray. Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population. United Kingdom: N. p., 2017.
Web. doi:10.1186/s12864-017-4158-8.
Wai, Ching Man, Zhang, Jisen, Jones, Tyler C., Nagai, Chifumi, & Ming, Ray. Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population. United Kingdom. https://doi.org/10.1186/s12864-017-4158-8
Wai, Ching Man, Zhang, Jisen, Jones, Tyler C., Nagai, Chifumi, and Ming, Ray. Wed .
"Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population". United Kingdom. https://doi.org/10.1186/s12864-017-4158-8.
@article{osti_1618566,
title = {Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population},
author = {Wai, Ching Man and Zhang, Jisen and Jones, Tyler C. and Nagai, Chifumi and Ming, Ray},
abstractNote = {Sugarcane is an emerging dual-purpose biofuel crop for energy and sugar production, owing to its rapid growth rate, high sucrose storage in the stems, and high lignocellulosic yield. It has the highest biomass production reaching 1.9 billion tonnes in 2014 worldwide.},
doi = {10.1186/s12864-017-4158-8},
journal = {BMC Genomics},
number = 1,
volume = 18,
place = {United Kingdom},
year = {Wed Oct 11 00:00:00 EDT 2017},
month = {Wed Oct 11 00:00:00 EDT 2017}
}
Free Publicly Available Full Text
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https://doi.org/10.1186/s12864-017-4158-8
https://doi.org/10.1186/s12864-017-4158-8
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Cited by: 16 works
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Works referenced in this record:
Energy- and greenhouse gas-based LCA of biofuel and bioenergy systems: Key issues, ranges and recommendations
journal, June 2009
- Cherubini, Francesco; Bird, Neil D.; Cowie, Annette
- Resources, Conservation and Recycling, Vol. 53, Issue 8
Altering the relative abundance of hydroxycinnamic acids enhances the cell wall digestibility of high-lignin sugarcane
journal, August 2016
- Fong Chong, Barrie; Bonnett, Graham D.; O’Shea, Michael G.
- Biomass and Bioenergy, Vol. 91
MYB83 Is a Direct Target of SND1 and Acts Redundantly with MYB46 in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis
journal, October 2009
- McCarthy, R. L.; Zhong, R.; Ye, Z. -H.
- Plant and Cell Physiology, Vol. 50, Issue 11
Feedstocks for Lignocellulosic Biofuels
journal, August 2010
- Somerville, Cris; Youngs, Heather; Taylor, Caroline
- Science, Vol. 329, Issue 5993, p. 790-792
Engineering the cell wall by reducing de-methyl-esterified homogalacturonan improves saccharification of plant tissues for bioconversion
journal, December 2009
- Lionetti, V.; Francocci, F.; Ferrari, S.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 2
Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks
journal, October 2011
- Shen, Hui; He, Xianzhi; Poovaiah, Charleson R.
- New Phytologist, Vol. 193, Issue 1, p. 121-136
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
journal, November 2009
- Robinson, M. D.; McCarthy, D. J.; Smyth, G. K.
- Bioinformatics, Vol. 26, Issue 1
Functional analysis of sucrose phosphate synthase (SPS) and sucrose synthase (SS) in sugarcane (Saccharum) cultivars: Sugarcane functional sucrose enzyme analysis
journal, August 2010
- Verma, A. K.; Upadhyay, S. K.; Verma, P. C.
- Plant Biology, Vol. 13, Issue 2
MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis
journal, November 2012
- Kim, Won-Chan; Ko, Jae-Heung; Kim, Joo-Yeol
- The Plant Journal, Vol. 73, Issue 1
The maize ZmMYB42 represses the phenylpropanoid pathway and affects the cell wall structure, composition and degradability in Arabidopsis thaliana
journal, February 2009
- Sonbol, Fathi-Mohamed; Fornalé, Silvia; Capellades, Montserrat
- Plant Molecular Biology, Vol. 70, Issue 3
Identification of transcripts associated with cell wall metabolism and development in the stem of sugarcane by Affymetrix GeneChip Sugarcane Genome Array expression profiling
journal, November 2006
- Casu, Rosanne E.; Jarmey, Janine M.; Bonnett, Graham D.
- Functional & Integrative Genomics, Vol. 7, Issue 2
HTSeq--a Python framework to work with high-throughput sequencing data
journal, September 2014
- Anders, S.; Pyl, P. T.; Huber, W.
- Bioinformatics, Vol. 31, Issue 2
MIXTA-Like Transcription Factors and WAX INDUCER1/SHINE1 Coordinately Regulate Cuticle Development in Arabidopsis and Torenia fournieri
journal, May 2013
- Oshima, Yoshimi; Shikata, Masahito; Koyama, Tomotsugu
- The Plant Cell, Vol. 25, Issue 5
Disruption of LACCASE4 and 17 Results in Tissue-Specific Alterations to Lignification of Arabidopsis thaliana Stems
journal, March 2011
- Berthet, Serge; Demont-Caulet, Nathalie; Pollet, Brigitte
- The Plant Cell, Vol. 23, Issue 3
Composition of sugar cane, energy cane, and sweet sorghum suitable for ethanol production at Louisiana sugar mills
journal, August 2010
- Kim, Misook; Day, Donal F.
- Journal of Industrial Microbiology & Biotechnology, Vol. 38, Issue 7
Promoting Utilization of Saccharum spp. Genetic Resources through Genetic Diversity Analysis and Core Collection Construction
journal, October 2014
- Nayak, Spurthi N.; Song, Jian; Villa, Andrea
- PLoS ONE, Vol. 9, Issue 10
A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice
journal, May 2015
- Huang, Debao; Wang, Shaogan; Zhang, Baocai
- The Plant Cell, Vol. 27, Issue 6
Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis
journal, August 2013
- Vanholme, R.; Cesarino, I.; Rataj, K.
- Science, Vol. 341, Issue 6150
MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes
journal, December 2011
- Zhong, Ruiqin; Ye, Zheng-Hua
- Plant and Cell Physiology, Vol. 53, Issue 2
Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors
journal, September 2011
- Zhong, R.; Lee, C.; McCarthy, R. L.
- Plant and Cell Physiology, Vol. 52, Issue 10
Genetic modification of plant cell walls to enhance biomass yield and biofuel production in bioenergy crops
journal, September 2016
- Wang, Yanting; Fan, Chunfen; Hu, Huizhen
- Biotechnology Advances, Vol. 34, Issue 5
ZmMYB31 directly represses maize lignin genes and redirects the phenylpropanoid metabolic flux: ZmMYB31 controls phenylpropanoids
journal, October 2010
- Fornalé, Silvia; Shi, Xinhui; Chai, Chenglin
- The Plant Journal, Vol. 64, Issue 4
Sugarcane for bioenergy production: an assessment of yield and regulation of sucrose content
journal, April 2010
- Waclawovsky, Alessandro J.; Sato, Paloma M.; Lembke, Carolina G.
- Plant Biotechnology Journal, Vol. 8, Issue 3
Overexpression of Brassica rapa SHI-RELATED SEQUENCE genes suppresses growth and development in Arabidopsis thaliana
journal, July 2012
- Hong, Joon Ki; Kim, Jin A.; Kim, Jung Sun
- Biotechnology Letters, Vol. 34, Issue 8
SUT2, a Putative Sucrose Sensor in Sieve Elements
journal, July 2000
- Barker, Laurence; Kühn, Christina; Weise, Andreas
- The Plant Cell, Vol. 12, Issue 7
The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana: Control of leaf shape and size by AtGRF5 and AN3
journal, June 2005
- Horiguchi, Gorou; Kim, Gyung-Tae; Tsukaya, Hirokazu
- The Plant Journal, Vol. 43, Issue 1
Lignification in Sugarcane: Biochemical Characterization, Gene Discovery, and Expression Analysis in Two Genotypes Contrasting for Lignin Content
journal, October 2013
- Bottcher, A.; Cesarino, I.; Brombini dos Santos, A.
- PLANT PHYSIOLOGY, Vol. 163, Issue 4
The potential of C4 grasses for cellulosic biofuel production
journal, January 2013
- van der Weijde, Tim; Alvim Kamei, Claire L.; Torres, Andres F.
- Frontiers in Plant Science, Vol. 4
Characterization of Novel Sorghum brown midrib Mutants from an EMS-Mutagenized Population
journal, September 2014
- Sattler, Scott E.; Saballos, Ana; Xin, Zhanguo
- G3: Genes|Genomes|Genetics, Vol. 4, Issue 11
Improving Saccharification Efficiency of Alfalfa Stems Through Modification of the Terminal Stages of Monolignol Biosynthesis
journal, September 2008
- Jackson, Lisa A.; Shadle, Gail L.; Zhou, Rui
- BioEnergy Research, Vol. 1, Issue 3-4
Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport
journal, December 2011
- Chen, L. -Q.; Qu, X. -Q.; Hou, B. -H.
- Science, Vol. 335, Issue 6065
Transcriptional Profiling of Mature Arabidopsis Trichomes Reveals That NOECK Encodes the MIXTA-Like Transcriptional Regulator MYB106
journal, September 2008
- Jakoby, Marc J.; Falkenhan, Doris; Mader, Michael T.
- Plant Physiology, Vol. 148, Issue 3
Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock
journal, January 2015
- Biswal, Ajaya K.; Hao, Zhangying; Pattathil, Sivakumar
- Biotechnology for Biofuels, Vol. 8, Issue 1
TALEN mediated targeted mutagenesis of the caffeic acid O-methyltransferase in highly polyploid sugarcane improves cell wall composition for production of bioethanol
journal, June 2016
- Jung, Je Hyeong; Altpeter, Fredy
- Plant Molecular Biology, Vol. 92, Issue 1-2
Functional Characterization of the Poplar R2R3-MYB Transcription Factor PtoMYB216 Involved in the Regulation of Lignin Biosynthesis during Wood Formation
journal, October 2013
- Tian, Qiaoyan; Wang, Xianqiang; Li, Chaofeng
- PLoS ONE, Vol. 8, Issue 10
Net energy of cellulosic ethanol from switchgrass
journal, January 2008
- Schmer, M. R.; Vogel, K. P.; Mitchell, R. B.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 2
RNAi suppression of lignin biosynthesis in sugarcane reduces recalcitrance for biofuel production from lignocellulosic biomass: RNAi suppression of
journal, August 2012
- Jung, Je Hyeong; Fouad, Walid M.; Vermerris, Wilfred
- Plant Biotechnology Journal, Vol. 10, Issue 9
SHORT INTERNODES-like genes regulate shoot growth and xylem proliferation in Populus
journal, May 2011
- Zawaski, Christine; Kadmiel, Mahita; Ma, Cathleen
- New Phytologist, Vol. 191, Issue 3
Overexpression of SbMyb60 impacts phenylpropanoid biosynthesis and alters secondary cell wall composition in Sorghum bicolor
journal, January 2016
- Scully, Erin D.; Gries, Tammy; Sarath, Gautam
- The Plant Journal, Vol. 85, Issue 3
Altering the Cell Wall and Its Impact on Plant Disease: From Forage to Bioenergy
journal, August 2014
- Zhao, Qiao; Dixon, Richard A.
- Annual Review of Phytopathology, Vol. 52, Issue 1
Wounding Enhances Expression of AtSUC3, a Sucrose Transporter from Arabidopsis Sieve Elements and Sink Tissues
journal, January 2004
- Meyer, Stefan; Lauterbach, Christian; Niedermeier, Matthias
- Plant Physiology, Vol. 134, Issue 2
Potential for Genetic Improvement of Sugarcane as a Source of Biomass for Biofuels
journal, November 2015
- Hoang, Nam V.; Furtado, Agnelo; Botha, Frederik C.
- Frontiers in Bioengineering and Biotechnology, Vol. 3
GROWTH REGULATING FACTOR5 Stimulates Arabidopsis Chloroplast Division, Photosynthesis, and Leaf Longevity
journal, January 2015
- Vercruyssen, Liesbeth; Tognetti, Vanesa B.; Gonzalez, Nathalie
- Plant Physiology, Vol. 167, Issue 3
Source - sink differences in genotypes and water regimes influencing sucrose accumulation in sugarcane stalks
journal, January 2009
- Inman-Bamber, N. G.; Bonnett, G. D.; Spillman, M. F.
- Crop and Pasture Science, Vol. 60, Issue 4
Works referencing / citing this record:
Diel oscillations in cell wall components and soluble sugars as a response to short-day in sugarcane (Saccharum sp.)
journal, May 2019
- Alves, Leonardo Cardoso; Llerena, Juan Pablo Portilla; Mazzafera, Paulo
- BMC Plant Biology, Vol. 19, Issue 1
Differential expression of hormone related genes between extreme segregants of a Saccharum interspecific F2 population
journal, February 2018
- Zhu, Fan; Wai, Ching Man; Zhang, Jisen
- Euphytica, Vol. 214, Issue 3
Overexpression of PsnSuSy1, 2 genes enhances secondary cell wall thickening, vegetative growth, and mechanical strength in transgenic tobacco
journal, May 2019
- Li, Meilang; Wang, Shuan; Liu, Yingying
- Plant Molecular Biology, Vol. 100, Issue 3