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Title: Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls

Journal Article · · BMC Genomics
 [1];  [1];  [2];  [1];  [3];  [3];  [1];  [1];  [1]
  1. CSIRO Agriculture and Food, Canberra (Australia)
  2. The Australian National University, Canberra (Australia)
  3. The Wisconsin Energy Institute, Madison, WI (United States). Department of Biochemistry and the Department of Energys Great Lakes BioEnergy Research Center
+ Show Author Affiliations

Knowledge of plant secondary cell wall (SCW) regulation and deposition is mainly based on the Arabidopsis model of a ‘typical’ lignocellulosic SCW. However, SCWs in other plants can vary from this. The SCW of mature cotton seed fibres is highly cellulosic and lacks lignification whereas xylem SCWs are lignocellulosic. We used cotton as a model to study different SCWs and the expression of the genes involved in their formation via RNA deep sequencing and chemical analysis of stem and seed fibre.

Research Organization:
University of Wisconsin System, Madison, WI (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE
Grant/Contract Number:
FC02-07ER64494
OSTI ID:
1618554
Alternate ID(s):
OSTI ID: 1393388
Journal Information:
BMC Genomics, Vol. 18, Issue 1; ISSN 1471-2164
Publisher:
SpringerCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 27 works
Citation information provided by
Web of Science

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Cited By (11)

Roles of potential plant hormones and transcription factors in controlling leaf senescence and drought tolerance journal October 2018
Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line preprint December 2019
Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line journal December 2019
Correction to: Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls journal April 2018
Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors journal March 2020
Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase journal December 2018
Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase journal December 2018
GhHUB2, a ubiquitin ligase, is involved in cotton fiber development via the ubiquitin–26S proteasome pathway journal July 2018
Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.) journal January 2020
DNA N6-Methyladenosine modification role in transmitted variations from genomic DNA to RNA in Herrania umbratica journal June 2019
DNA N6-Methyladenosine modification role in transmitted variations from genomic DNA to RNA in Herrania umbratica journal June 2019

Linked Research (20)

Figures / Tables (11)

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Secondary cell wall
Primary cell wall
Transcription factor
Cotton
Gossypium hirsutum
Cellulose synthase
Lignin
Syringyl
Guaiacyl
p-Hydroxyphenyl