Title: Genomic and transcriptomic analysis of carbohydrate utilization by Paenibacillus sp. JDR-2: systems for bioprocessing plant polysaccharides

Journal Article · · BMC Genomics
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Not Available

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC)
Contributing Organization:
USDA
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1618544
Journal Information:
BMC Genomics, Journal Name: BMC Genomics Journal Issue: 1 Vol. 17; ISSN 1471-2164
Publisher:
Springer Science + Business MediaCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (50)

Catalytic Properties ofBacillus megaterium Amylase journal January 1987
Chemistry of Cereal Grains book October 2012
Substrate competition and specificity at the active site of amylopullulanase from Clostridium thermohydrosulfuricum journal January 1990
Molecular characterization of a dimeric intracellular maltogenic amylase of Bacillus subtilis SUH4-2 journal May 2000
Structural features and biological activity of an acidic polysaccharide complex from Mahonia aquifolium (Pursh) Nutt journal August 2004
Construction and characterization of recombinant Bacillus subtilis JY123 able to transport xylose efficiently journal November 2012
Molecular aspects of cereal β-glucan functionality: Physical properties, technological applications and physiological effects journal September 2007
Insights into cellulosome assembly and dynamics: from dissection to reconstruction of the supramolecular enzyme complex journal October 2013
Microbial Strategies for the Depolymerization of Glucuronoxylan: Leads to Biotechnological Applications of Endoxylanases book August 2003
Cellulosomes: plant-cell-wall-degrading enzyme complexes journal July 2004
Carbohydrate-binding modules: fine-tuning polysaccharide recognition journal September 2004
Cellulose utilization by Clostridium thermocellum: Bioenergetics and hydrolysis product assimilation journal May 2005
Structure of Surface Layer Homology (SLH) Domains from Bacillus anthracis Surface Array Protein journal May 2011
Crystal Structures of the Laminarinase Catalytic Domain from Thermotoga maritima MSB8 in Complex with Inhibitors : ESSENTIAL RESIDUES FOR β-1,3- and β-1,4-GLUCAN SELECTION journal November 2011
Multiple Regulatory Mechanisms Control the Expression of the Geobacillus stearothermophilus Gene for Extracellular Xylanase journal July 2014
Carbohydrate-induced Differential Gene Expression Patterns in the Hyperthermophilic Bacterium Thermotoga maritima journal December 2002
Nucleotide sequence of an amylase gene from Bacillus megaterium journal January 1988
The Pfam protein families database journal January 2004
CDD: a conserved domain database for interactive domain family analysis journal January 2007
NCBI BLAST: a better web interface journal May 2008
The carbohydrate-active enzymes database (CAZy) in 2013 journal November 2013
Genes encoding xylan and  -glucan hydrolysing enzymes in Bacillus subtilis: characterization, mapping and construction of strains deficient in lichenase, cellulase and xylanase journal February 1995
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing journal January 1995
GH51 Arabinofuranosidase and Its Role in the Methylglucuronoarabinoxylan Utilization System in Paenibacillus sp. Strain JDR-2 journal July 2014
Aldouronate Utilization in Paenibacillus sp. Strain JDR-2: Physiological and Enzymatic Evidence for Coupling of Extracellular Depolymerization and Intracellular Metabolism journal April 2009
Transcriptomic Analysis of Xylan Utilization Systems in Paenibacillus sp. Strain JDR-2 journal December 2014
A 1,3-1,4-β-Glucan Utilization Regulon in Paenibacillus sp. Strain JDR-2 journal January 2016
S-Layer Homology Domain Proteins Csac_0678 and Csac_2722 Are Implicated in Plant Polysaccharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus journal December 2011
Paenibacillus sp. Strain JDR-2 and XynA1: a Novel System for Methylglucuronoxylan Utilization journal February 2006
Maltose and Maltodextrin Utilization by Bacillus subtilis journal June 2006
The L-Arabinan Utilization System of Geobacillus stearothermophilus journal April 2011
The thuEFGKAB Operon of Rhizobia and Agrobacterium tumefaciens Codes for Transport of Trehalose, Maltitol, and Isomers of Sucrose and Their Assimilation through the Formation of Their 3-Keto Derivatives journal June 2013
Global View of the Clostridium thermocellum Cellulosome Revealed by Quantitative Proteomic Analysis journal July 2007
Structure, Function, and Regulation of the Aldouronate Utilization Gene Cluster from Paenibacillus sp. Strain JDR-2 journal October 2007
Cell Surface Xylanases of the Glycoside Hydrolase Family 10 Are Essential for Xylan Utilization by Paenibacillus sp. W-61 as Generators of Xylo-Oligosaccharide Inducers for the Xylanase Genes journal February 2010
Are the Surface Layer Homology Domains Essential for Cell Surface Display and Glycosylation of the S-Layer Protein from Paenibacillus alvei CCM 2051T? journal November 2012
Regulation of Pectate Lyase Synthesis in Pseudomonas fluorescens and Erwinia carotovora journal January 1970
Cloning, sequencing, and expression of the gene encoding a large S-layer-associated endoxylanase from Thermoanaerobacterium sp. strain JW/SL-YS 485 in Escherichia coli. journal January 1996
Maltose Metabolism in the Hyperthermophilic Archaeon Thermococcus litoralis: Purification and Characterization of Key Enzymes journal June 1999
The Glucuronic Acid Utilization Gene Cluster from Bacillus stearothermophilus T-6 journal June 1999
Functional Characterization of a Novel Xylanase from a Corn Strain of Erwinia chrysanthemi journal March 2001
Microbial Cellulose Utilization: Fundamentals and Biotechnology journal September 2002
Cell-Surface-Anchoring Role of N-Terminal Surface Layer Homology Domains of Clostridium cellulovorans EngE journal February 2002
CONSTITUTION OF A 4- O -METHYLGLUCURONOXYLAN FROM THE WOOD OF TREMBLING ASPEN (POPULUS TREMULOIDES MICHX.) journal May 1961
Recombinant production and biochemical characterization of a hyperthermostable α-glucan/maltodextrin phosphorylase from Pyrococcus furiosus journal January 2008
PePPER: a webserver for prediction of prokaryote promoter elements and regulons journal January 2012
Comparative analysis of the ability of Clostridium clariflavum strains and Clostridium thermocellumto utilize hemicellulose and unpretreated plant material journal November 2014
Cloning, Sequencing, and Expression of the Gene Encoding the Clostridium stercorarium Xylanase C in Escherichia coli journal January 1999
Cloning, Sequencing, and Expression of the Gene Encoding a Cell-bound Multi-domain Xylanase from Clostridium josui , and Characterization of the Translated Product journal January 2000
Complete genome sequence of Paenibacillus sp. strain JDR-2 journal March 2012

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Biofuels and chemicals
Bioprocessing systems
Biotechnology & Applied Microbiology
Genetics & Heredity
JDR-2
Paenibacillus sp.
RNA sequencing
Soluble β-glucan
Starch
Transcriptome
Xylans