High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing
Abstract
Switchgrass (Panicum virgatum L.) is a warm-season perennial grass with promising potential as a bioenergy crop in the United States. However, the lack of genomic resources has slowed the development of plant lines with optimal characteristics for sustainable feedstock production. We generated high-density single nucleotide polymorphism (SNP) linkage maps using a reduced-representation sequencing approach by genotyping 231 F1 progeny of a cross between two parents of lowland ecotype from the cultivars Kanlow and Alamo. Over 350 million reads were generated and aligned, which enabled identification and ordering of 4611 high-quality SNPs. The total lengths of the resulting framework maps were 1770 cM for the Kanlow parent and 2059 cM for the Alamo parent. These maps show collinearity with maps generated with polymerase chain reaction (PCR)-based simple-sequence repeat (SSR) markers, and new SNP markers were identified in previously unpopulated regions of the genome. Transmission segregation distortion affected all linkage groups (LGs) to differing degrees, and ordering of distorted markers highlighted several regions of unequal inheritance. Framework maps were adversely affected by the addition of distorted markers with varying severity, but distorted maps were of higher marker density and provided additional information for analysis. Alignment of these linkage maps with a draftmore »
- Authors:
-
- USDA-ARS, Albany, CA (United States)
- Univ. of California, Davis, CA (United States)
- HudsonAlpha Genome Sequencing Center, Huntsville, AL (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); US Dept. of Agriculture (USDA), Washington, DC (United States). Agricultural Research Service (ARS)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1616040
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- The Plant Genome
- Additional Journal Information:
- Journal Volume: 8; Journal Issue: 2; Journal ID: ISSN 1940-3372
- Publisher:
- Alliance of Crop, Soil, and Environmental Science Societies
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Fiedler, Jason D., Lanzatella, Christina, Okada, Miki, Jenkins, Jerry, Schmutz, Jeremy, and Tobias, Christian M. High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing. United States: N. p., 2015.
Web. doi:10.3835/plantgenome2014.10.0065.
Fiedler, Jason D., Lanzatella, Christina, Okada, Miki, Jenkins, Jerry, Schmutz, Jeremy, & Tobias, Christian M. High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing. United States. https://doi.org/10.3835/plantgenome2014.10.0065
Fiedler, Jason D., Lanzatella, Christina, Okada, Miki, Jenkins, Jerry, Schmutz, Jeremy, and Tobias, Christian M. Wed .
"High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing". United States. https://doi.org/10.3835/plantgenome2014.10.0065. https://www.osti.gov/servlets/purl/1616040.
@article{osti_1616040,
title = {High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing},
author = {Fiedler, Jason D. and Lanzatella, Christina and Okada, Miki and Jenkins, Jerry and Schmutz, Jeremy and Tobias, Christian M.},
abstractNote = {Switchgrass (Panicum virgatum L.) is a warm-season perennial grass with promising potential as a bioenergy crop in the United States. However, the lack of genomic resources has slowed the development of plant lines with optimal characteristics for sustainable feedstock production. We generated high-density single nucleotide polymorphism (SNP) linkage maps using a reduced-representation sequencing approach by genotyping 231 F1 progeny of a cross between two parents of lowland ecotype from the cultivars Kanlow and Alamo. Over 350 million reads were generated and aligned, which enabled identification and ordering of 4611 high-quality SNPs. The total lengths of the resulting framework maps were 1770 cM for the Kanlow parent and 2059 cM for the Alamo parent. These maps show collinearity with maps generated with polymerase chain reaction (PCR)-based simple-sequence repeat (SSR) markers, and new SNP markers were identified in previously unpopulated regions of the genome. Transmission segregation distortion affected all linkage groups (LGs) to differing degrees, and ordering of distorted markers highlighted several regions of unequal inheritance. Framework maps were adversely affected by the addition of distorted markers with varying severity, but distorted maps were of higher marker density and provided additional information for analysis. Alignment of these linkage maps with a draft version of the switchgrass genome assembly demonstrated high levels of collinearity and provides greater confidence in the validity of both resources. This methodology has proven to be a rapid and cost-effective way to generate high-quality linkage maps of an outcrossing species.},
doi = {10.3835/plantgenome2014.10.0065},
journal = {The Plant Genome},
number = 2,
volume = 8,
place = {United States},
year = {Wed Jul 01 00:00:00 EDT 2015},
month = {Wed Jul 01 00:00:00 EDT 2015}
}
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Figures / Tables:
Figure 1: Graphical comparison of summary statistics (Table 1) of different maps of K5 x A4 population. (a) Total length and total number markers in each map. (b) The average interlocus distance (total length/total number of markers).
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Works referenced in this record:
Approaching the self-incompatibility locus Z in rye (Secale cereale L.) via comparative genetics
journal, February 2005
- Hackauf, B.; Wehling, P.
- Theoretical and Applied Genetics, Vol. 110, Issue 5
A Comprehensive Rice Transcript Map Containing 6591 Expressed Sequence Tag Sites
journal, March 2002
- Wu, Jianzhong; Maehara, Tomoko; Shimokawa, Takanori
- The Plant Cell, Vol. 14, Issue 3
Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations
journal, August 2013
- Spindel, Jennifer; Wright, Mark; Chen, Charles
- Theoretical and Applied Genetics, Vol. 126, Issue 11
Statistical Methods for the Qualitative Assessment of Dynamic Models with Time Delay ( R Package qualV )
journal, January 2007
- Jachner, Stefanie; Boogaart, Gerald; Petzoldt, Thomas
- Journal of Statistical Software, Vol. 22, Issue 8
Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances
journal, July 2009
- LaFramboise, T.
- Nucleic Acids Research, Vol. 37, Issue 13
DNA Content and Chloroplast DNA Polymorphisms among Switchgrasses from Remnant Midwestern Prairies
journal, January 1997
- Hultquist, Sherry J.; Vogel, K. P.; Lee, D. J.
- Crop Science, Vol. 37, Issue 2
Genic microsatellite markers derived from EST sequences of switchgrass (Panicum virgatum L.)
journal, March 2006
- Tobias, Christian M.; Hayden, Daniel M.; Twigg, Paul
- Molecular Ecology Notes, Vol. 6, Issue 1
Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol
journal, January 2013
- Lu, Fei; Lipka, Alexander E.; Glaubitz, Jeff
- PLoS Genetics, Vol. 9, Issue 1
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
journal, October 2008
- Baird, Nathan A.; Etter, Paul D.; Atwood, Tressa S.
- PLoS ONE, Vol. 3, Issue 10
An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench
journal, December 2000
- Bhattramakki, Dinakar; Dong, Jianmin; Chhabra, Ashok K.
- Genome, Vol. 43, Issue 6
Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation
journal, January 2013
- Ward, Judson A.; Bhangoo, Jasbir; Fernández-Fernández, Felicidad
- BMC Genomics, Vol. 14, Issue 1
Genetic diversity of the genus Malus and implications for linkage mapping with SNPs
journal, March 2011
- Micheletti, Diego; Troggio, Michela; Zharkikh, Andrey
- Tree Genetics & Genomes, Vol. 7, Issue 4
Comprehensive genotyping of the USA national maize inbred seed bank
journal, June 2013
- Romay, Maria C.; Millard, Mark J.; Glaubitz, Jeffrey C.
- Genome Biology, Vol. 14, Issue 6
Complete Switchgrass Genetic Maps Reveal Subgenome Collinearity, Preferential Pairing and Multilocus Interactions
journal, April 2010
- Okada, Miki; Lanzatella, Christina; Saha, Malay C.
- Genetics, Vol. 185, Issue 3
Construction of integrated genetic linkage maps by means of a new computer package: Join Map
journal, May 1993
- Stam, Piet
- The Plant Journal, Vol. 3, Issue 5
Constructing dense genetic linkage maps
journal, May 2001
- Jansen, J.; de Jong, A. G.; van Ooijen, J. W.
- Theoretical and Applied Genetics, Vol. 102, Issue 6-7
Insight on segregation distortions in two intraspecific crosses between annual species of Medicago (Leguminosae)
journal, April 1997
- Jenczewski, E.; Gherardi, M.; Bonnin, I.
- Theoretical and Applied Genetics, Vol. 94, Issue 5
Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation
journal, January 2013
- Ward, Judson A.; Bhangoo, Jasbir; Fernández-Fernández, Felicidad
- BMC Genomics, Vol. 14, Issue 1
Construction of a genetic linkage map for roses using RAPD and AFLP markers
journal, September 1999
- Debener, T.; Mattiesch, L.
- Theoretical and Applied Genetics, Vol. 99, Issue 5
Fast and accurate long-read alignment with Burrows–Wheeler transform
journal, January 2010
- Li, Heng; Durbin, Richard
- Bioinformatics, Vol. 26, Issue 5
Emerging technologies advancing forage and turf grass genomics
journal, January 2014
- Kopecký, David; Studer, Bruno
- Biotechnology Advances, Vol. 32, Issue 1
SNP Markers and Their Impact on Plant Breeding
journal, January 2012
- Mammadov, Jafar; Aggarwal, Rajat; Buyyarapu, Ramesh
- International Journal of Plant Genomics, Vol. 2012
Linkage Maps of Lowland and Upland Tetraploid Switchgrass Ecotypes
journal, March 2013
- Serba, Desalegn; Wu, Limin; Daverdin, Guillaume
- BioEnergy Research, Vol. 6, Issue 3
Cellulosic Biofuels
journal, June 2009
- Carroll, Andrew; Somerville, Chris
- Annual Review of Plant Biology, Vol. 60, Issue 1
Chromosomal regions associated with segregation distortion in maize
journal, September 2002
- Lu, H.; Romero-Severson, J.; Bernardo, R.
- Theoretical and Applied Genetics, Vol. 105, Issue 4
Incompatibility Systems in Switchgrass
journal, January 2002
- Martínez-Reyna, J. M.; Vogel, K. P.
- Crop Science, Vol. 42, Issue 6
Comparisons of four approximation algorithms for large-scale linkage map construction
journal, May 2011
- Wu, Jixiang; Jenkins, Johnie N.; McCarty, Jack C.
- Theoretical and Applied Genetics, Vol. 123, Issue 4
Fine-scale comparative genetic and physical mapping supports map-based cloning strategies for the self-incompatibility loci of perennial ryegrass (Lolium perenne L.)
journal, November 2009
- Shinozuka, Hiroshi; Cogan, Noel O. I.; Smith, Kevin F.
- Plant Molecular Biology, Vol. 72, Issue 3
Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat
journal, October 2004
- Yu, Ju-Kyung; Dake, Trevor M.; Singh, Sukhwinder
- Genome, Vol. 47, Issue 5
Comparisons of four approximation algorithms for large-scale linkage map construction
journal, May 2011
- Wu, Jixiang; Jenkins, Johnie N.; McCarty, Jack C.
- Theoretical and Applied Genetics, Vol. 123, Issue 4
Investigation of genomic organization in switchgrass (Panicum virgatum L.) using DNA markers
journal, April 2005
- Missaoui, A. M.; Paterson, A. H.; Bouton, J. H.
- Theoretical and Applied Genetics, Vol. 110, Issue 8
Construction of an intraspecific integrated linkage map of pepper using molecular markers and doubled-haploid progenies
journal, February 1995
- Lefebvre, Véronique; Palloix, Alain; Caranta, Carole
- Genome, Vol. 38, Issue 1
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
journal, February 2012
- Poland, Jesse A.; Brown, Patrick J.; Sorrells, Mark E.
- PLoS ONE, Vol. 7, Issue 2
Genetic Linkage Mapping and Transmission Ratio Distortion in a Three-Generation Four-Founder Population of Panicum virgatum (L.)
journal, March 2014
- Li, Guifen; Serba, Desalegn D.; Saha, Malay C.
- G3: Genes|Genomes|Genetics, Vol. 4, Issue 5
Long-term productivity of lowland and upland switchgrass cytotypes as affected by cutting frequency
journal, November 2008
- Monti, A.; Bezzi, G.; Pritoni, G.
- Bioresource Technology, Vol. 99, Issue 16
The variant call format and VCFtools
journal, June 2011
- Danecek, P.; Auton, A.; Abecasis, G.
- Bioinformatics, Vol. 27, Issue 15
Dihaploid Stocks of Switchgrass Isolated by a Screening Approach
journal, February 2010
- Young, Hugh A.; Hernlem, Bradley J.; Anderton, Amy L.
- BioEnergy Research, Vol. 3, Issue 4
Development of a set of SNP markers present in expressed genes of the apple
journal, November 2008
- Chagné, David; Gasic, Ksenija; Crowhurst, Ross N.
- Genomics, Vol. 92, Issue 5
Investigation of genomic organization in switchgrass (Panicum virgatum L.) using DNA markers
journal, April 2005
- Missaoui, A. M.; Paterson, A. H.; Bouton, J. H.
- Theoretical and Applied Genetics, Vol. 110, Issue 8
Genetic Diversity in Switchgrass Collections Assessed by EST-SSR Markers
journal, June 2008
- Narasimhamoorthy, B.; Saha, M. C.; Swaller, T.
- BioEnergy Research, Vol. 1, Issue 2
MapChart: Software for the Graphical Presentation of Linkage Maps and QTLs
journal, January 2002
- Voorrips, R. E.
- Journal of Heredity, Vol. 93, Issue 1
Description of durum wheat linkage map and comparative sequence analysis of wheat mapped DArT markers with rice and Brachypodium genomes
journal, January 2013
- Colasuonno, Pasqualina; Maria, Mastrangelo; Blanco, Antonio
- BMC Genetics, Vol. 14, Issue 1
Segregation Distorters
journal, December 1991
- Lyttle, Terrence W.
- Annual Review of Genetics, Vol. 25, Issue 1
Genetic Diversity in Switchgrass Collections Assessed by EST-SSR Markers
journal, June 2008
- Narasimhamoorthy, B.; Saha, M. C.; Swaller, T.
- BioEnergy Research, Vol. 1, Issue 2
Dihaploid Stocks of Switchgrass Isolated by a Screening Approach
journal, February 2010
- Young, Hugh A.; Hernlem, Bradley J.; Anderton, Amy L.
- BioEnergy Research, Vol. 3, Issue 4
Large SNP arrays for genotyping in crop plants
journal, October 2012
- Ganal, Martin W.; Polley, Andreas; Graner, Eva-Maria
- Journal of Biosciences, Vol. 37, Issue 5
Fine-scale comparative genetic and physical mapping supports map-based cloning strategies for the self-incompatibility loci of perennial ryegrass (Lolium perenne L.)
journal, November 2009
- Shinozuka, Hiroshi; Cogan, Noel O. I.; Smith, Kevin F.
- Plant Molecular Biology, Vol. 72, Issue 3
A review on SNP and other types of molecular markers and their use in animal genetics
journal, May 2002
- Vignal, Alain; Milan, Denis; SanCristobal, Magali
- Genetics Selection Evolution, Vol. 34, Issue 3
Large SNP arrays for genotyping in crop plants
journal, October 2012
- Ganal, Martin W.; Polley, Andreas; Graner, Eva-Maria
- Journal of Biosciences, Vol. 37, Issue 5
OneMap: software for genetic mapping in outcrossing species: OneMap
journal, June 2007
- Margarido, G. R. A.; Souza, A. P.; Garcia, A. A. F.
- Hereditas, Vol. 144, Issue 3
Switchgrass selection as a “model” bioenergy crop: A history of the process
journal, June 2010
- Wright, Lynn; Turhollow, Anthony
- Biomass and Bioenergy, Vol. 34, Issue 6
Analysis of RFLP mapping inaccuracy in Brassica napus L.
journal, July 1997
- Cloutier, S.; Cappadocia, M.; Landry, B. S.
- Theoretical and Applied Genetics, Vol. 95, Issue 1-2
Genetic Mapping in the Presence of Genotyping Errors
journal, February 2007
- Cartwright, Dustin A.; Troggio, Michela; Velasco, Riccardo
- Genetics, Vol. 176, Issue 4
TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
journal, February 2014
- Glaubitz, Jeffrey C.; Casstevens, Terry M.; Lu, Fei
- PLoS ONE, Vol. 9, Issue 2
Genotype and SNP calling from next-generation sequencing data
journal, May 2011
- Nielsen, Rasmus; Paul, Joshua S.; Albrechtsen, Anders
- Nature Reviews Genetics, Vol. 12, Issue 6
Latitudinal and Longitudinal Adaptation of Switchgrass Populations
journal, January 2007
- Casler, M. D.; Vogel, K. P.; Taliaferro, C. M.
- Crop Science, Vol. 47, Issue 6
Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations
journal, August 2013
- Spindel, Jennifer; Wright, Mark; Chen, Charles
- Theoretical and Applied Genetics, Vol. 126, Issue 11
Computational approaches and software tools for genetic linkage map estimation in plants
journal, November 2009
- Cheema, J.; Dicks, J.
- Briefings in Bioinformatics, Vol. 10, Issue 6
Approaching the self-incompatibility locus Z in rye (Secale cereale L.) via comparative genetics
journal, February 2005
- Hackauf, B.; Wehling, P.
- Theoretical and Applied Genetics, Vol. 110, Issue 5
Marker-assisted selection: an approach for precision plant breeding in the twenty-first century
journal, July 2007
- Collard, Bertrand C. Y.; Mackill, David J.
- Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 363, Issue 1491
Self-incompatibility in the grasses: evolutionary relationship of the S gene from Phalaris coerulescens to homologous sequences in other grasses
journal, January 1997
- Li, Xinmin; Paech, Nicholas; Nield, Jan
- Plant Molecular Biology, Vol. 34, Issue 2, p. 223-232
A High-Density Simple Sequence Repeat-Based Genetic Linkage Map of Switchgrass
journal, March 2012
- Liu, Linglong; Wu, Yanqi; Wang, Yunwen
- G3: Genes|Genomes|Genetics, Vol. 2, Issue 3
Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat
journal, October 2004
- Yu, Ju-Kyung; Dake, Trevor M.; Singh, Sukhwinder
- Genome, Vol. 47, Issue 5
The Switchgrass Genome: Tools and Strategies
journal, January 2011
- Casler, Michael D.; Tobias, Christian M.; Kaeppler, Shawn M.
- The Plant Genome Journal, Vol. 4, Issue 3
Phytozome: a comparative platform for green plant genomics
journal, November 2011
- Goodstein, David M.; Shu, Shengqiang; Howson, Russell
- Nucleic Acids Research, Vol. 40, Issue D1
Karyotype variation is indicative of subgenomic and ecotypic differentiation in switchgrass
journal, January 2012
- Young, Hugh A.; Sarath, Gautam; Tobias, Christian M.
- BMC Plant Biology, Vol. 12, Issue 1
Karyotype variation is indicative of subgenomic and ecotypic differentiation in switchgrass
journal, January 2012
- Young, Hugh A.; Sarath, Gautam; Tobias, Christian M.
- BMC Plant Biology, Vol. 12, Issue 1
Progress towards elucidating the mechanisms of self-incompatibility in the grasses: further insights from studies in Lolium
journal, July 2011
- Klaas, Manfred; Yang, Bicheng; Bosch, Maurice
- Annals of Botany, Vol. 108, Issue 4
Chromosomal regions associated with segregation distortion in maize
journal, September 2002
- Lu, H.; Romero-Severson, J.; Bernardo, R.
- Theoretical and Applied Genetics, Vol. 105, Issue 4
Net energy of cellulosic ethanol from switchgrass
journal, January 2008
- Schmer, M. R.; Vogel, K. P.; Mitchell, R. B.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 2
An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench
journal, January 2000
- Bhattramakki, Dinakar; Dong, Jianmin; Chhabra, Ashok K.
- Genome, Vol. 43, Issue 6
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
journal, January 2010
- Hyten, David L.; Cannon, Steven B.; Song, Qijian
- BMC Genomics, Vol. 11, Issue 1
Linkage Maps of Lowland and Upland Tetraploid Switchgrass Ecotypes
journal, March 2013
- Serba, Desalegn; Wu, Limin; Daverdin, Guillaume
- BioEnergy Research, Vol. 6, Issue 3
Search and clustering orders of magnitude faster than BLAST
journal, August 2010
- Edgar, Robert C.
- Bioinformatics, Vol. 26, Issue 19, p. 2460-2461
Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps
journal, January 2003
- Hackett, C. A.; Broadfoot, L. B.
- Heredity, Vol. 90, Issue 1
The Estimation of map Distances from Recombination Values
journal, January 1943
- Kosambi, D. D.
- Annals of Eugenics, Vol. 12, Issue 1
Plants to power: bioenergy to fuel the future
journal, August 2008
- Yuan, Joshua S.; Tiller, Kelly H.; Al-Ahmad, Hani
- Trends in Plant Science, Vol. 13, Issue 8
Common SNPs explain a large proportion of the heritability for human height
journal, June 2010
- Yang, Jian; Benyamin, Beben; McEvoy, Brian P.
- Nature Genetics, Vol. 42, Issue 7
Five Nuclear Loci Resolve the Polyploid History of Switchgrass (Panicum virgatum L.) and Relatives
journal, June 2012
- Triplett, Jimmy K.; Wang, Yunjing; Zhong, Jinshun
- PLoS ONE, Vol. 7, Issue 6
Identification of a Selfing Compatible Genotype and Mode of Inheritance in Switchgrass
journal, December 2011
- Liu, Linglong; Wu, Yanqi
- BioEnergy Research, Vol. 5, Issue 3
Variation among Half-Sib Families and Heritability for Biomass Yield and Other Traits in Lowland Switchgrass ( L.)
journal, January 2010
- Bhandari, H. S.; Saha, M. C.; Mascia, P. N.
- Crop Science, Vol. 50, Issue 6
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
journal, June 2011
- Davey, John W.; Hohenlohe, Paul A.; Etter, Paul D.
- Nature Reviews Genetics, Vol. 12, Issue 7
Development of switchgrass (Panicum virgatum) as a bioenergy feedstock in the United States
journal, June 2005
- McLaughlin, Samuel B.; Adams Kszos, Lynn
- Biomass and Bioenergy, Vol. 28, Issue 6
Identification of a Selfing Compatible Genotype and Mode of Inheritance in Switchgrass
journal, December 2011
- Liu, Linglong; Wu, Yanqi
- BioEnergy Research, Vol. 5, Issue 3
Genic microsatellite markers derived from EST sequences of switchgrass (Panicum virgatum L.)
journal, March 2006
- Tobias, Christian M.; Hayden, Daniel M.; Twigg, Paul
- Molecular Ecology Notes, Vol. 6, Issue 1
A Linkage Map Reveals a Complex Basis for Segregation Distortion in an Interpopulation Cross in the Moss Ceratodon purpureus
journal, July 2007
- McDaniel, Stuart F.; Willis, John H.; Shaw, A. Jonathan
- Genetics, Vol. 176, Issue 4
OneMap: software for genetic mapping in outcrossing species: OneMap
journal, June 2007
- Margarido, G. R. A.; Souza, A. P.; Garcia, A. A. F.
- Hereditas, Vol. 144, Issue 3
Constructing Confidence Sets Using Rank Statistics
journal, September 1972
- Bauer, David F.
- Journal of the American Statistical Association, Vol. 67, Issue 339
A review on SNP and other types of molecular markers and their use in animal genetics
journal, May 2002
- Vignal, Alain; Milan, Denis; SanCristobal, Magali
- Genetics Selection Evolution, Vol. 34, Issue 3
The Estimation of map Distances from Recombination Values
journal, January 1943
- Kosambi, D. D.
- Annals of Eugenics, Vol. 12, Issue 1
Construction of integrated genetic linkage maps by means of a new computer package: Join Map
journal, May 1993
- Stam, Piet
- The Plant Journal, Vol. 3, Issue 5
Construction of an intraspecific integrated linkage map of pepper using molecular markers and doubled-haploid progenies
journal, February 1995
- Lefebvre, Véronique; Palloix, Alain; Caranta, Carole
- Genome, Vol. 38, Issue 1
Self-incompatibility in ryegrass 12. Genotyping and mapping the S and Z loci of Lolium perenne L
journal, May 2002
- Thorogood, D.; Kaiser, W. J.; Jones, J. G.
- Heredity, Vol. 88, Issue 5
Description of durum wheat linkage map and comparative sequence analysis of wheat mapped DArT markers with rice and Brachypodium genomes
journal, January 2013
- Colasuonno, Pasqualina; Maria, Mastrangelo; Blanco, Antonio
- BMC Genetics, Vol. 14, Issue 1
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
journal, May 2011
- Elshire, Robert J.; Glaubitz, Jeffrey C.; Sun, Qi
- PLoS ONE, Vol. 6, Issue 5, Article No. e19379
Comprehensive genotyping of the USA national maize inbred seed bank
journal, June 2013
- Romay, Maria C.; Millard, Mark J.; Glaubitz, Jeffrey C.
- Genome Biology, Vol. 14, Issue 6
Unequal Segregation of Nuclear Genes in Plants
journal, September 1986
- Zamir, Daniel; Tadmor, Yaakov
- Botanical Gazette, Vol. 147, Issue 3
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
journal, January 2010
- Hyten, David L.; Cannon, Steven B.; Song, Qijian
- BMC Genomics, Vol. 11, Issue 1
The Sequence Alignment/Map format and SAMtools
journal, June 2009
- Li, H.; Handsaker, B.; Wysoker, A.
- Bioinformatics, Vol. 25, Issue 16
The detection and estimation of linkage in polyploids using single-dose restriction fragments
journal, January 1992
- Wu, K. K.; Burnquist, W.; Sorrells, M. E.
- Theoretical and Applied Genetics, Vol. 83, Issue 3
The Biology and Agronomy of Switchgrass for Biofuels
journal, September 2005
- Parrish, David J.; Fike, John H.
- Critical Reviews in Plant Sciences, Vol. 24, Issue 5-6
Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers.
journal, August 1994
- Grattapaglia, D.; Sederoff, R.
- Genetics, Vol. 137, Issue 4
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- Reasor, Eric H.; Brosnan, James T.; Trigiano, Robert N.
- Planta, Vol. 244, Issue 4
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