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Title: Quantifying global N2O emissions from natural ecosystem soils using trait-based biogeochemistry models

Abstract

A group of soil microbes plays an important role in nitrogen cycling and N2O emissions from natural ecosystem soils. Wedeveloped a trait-based biogeochemical model based on an extant process-based biogeochemistry model, the Terrestrial Ecosystem Model (TEM), by incorporating the detailed microbial physiological processes of nitrification. The effect of ammonia-oxidizing Archaea (AOA),ammonia-oxidizing bacteria (AOB), and nitrite-oxidizing bacteria (NOB) was considered in modeling nitrification. Microbial traits, including microbial biomass and density, were explicitly considered. In addition,nitrogen cycling was coupled with carbon dynamics based on stoichiometry theory between carbon and nitrogen. The model was parameterized using observational data and then applied to quantifying global N2O emissions from global terrestrial ecosystem soils from 1990 to 2000. Our estimates of 8.7±1.6 Tg N yr–1 generally agreed with previous estimates during the study period. Tropical forests are a major emitter,accounting for 42 % of the global emissions. The model was more sensitive to temperature and precipitation and less sensitive to soil organic carbon and nitrogen contents. Compared to the model without considering the detailed microbial activities, the new model shows more variations in response to seasonal changes in climate. Our study suggests that further information on microbial diversity and ecophysiology features is needed. The more specificmore » guilds and their traits shall be considered in future soil N2O emission quantifications.« less

Authors:
 [1]; ORCiD logo [1]
  1. Purdue Univ., West Lafayette, IN (United States)
Publication Date:
Research Org.:
Purdue Univ., West Lafayette, IN (United States)
Sponsoring Org.:
USDOE Office of Science (SC); National Aeronautics and Space Administration (NASA); National Science Foundation (NSF)
OSTI Identifier:
1610031
Grant/Contract Number:  
FG02-08ER64599
Resource Type:
Accepted Manuscript
Journal Name:
Biogeosciences (Online)
Additional Journal Information:
Journal Name: Biogeosciences (Online); Journal Volume: 16; Journal Issue: 2; Journal ID: ISSN 1726-4189
Publisher:
European Geosciences Union
Country of Publication:
United States
Language:
English
Subject:
54 ENVIRONMENTAL SCIENCES; 58 GEOSCIENCES; 59 BASIC BIOLOGICAL SCIENCES; Environmental Sciences & Ecology; Geology

Citation Formats

Yu, Tong, and Zhuang, Qianlai. Quantifying global N2O emissions from natural ecosystem soils using trait-based biogeochemistry models. United States: N. p., 2019. Web. doi:10.5194/bg-16-207-2019.
Yu, Tong, & Zhuang, Qianlai. Quantifying global N2O emissions from natural ecosystem soils using trait-based biogeochemistry models. United States. https://doi.org/10.5194/bg-16-207-2019
Yu, Tong, and Zhuang, Qianlai. Mon . "Quantifying global N2O emissions from natural ecosystem soils using trait-based biogeochemistry models". United States. https://doi.org/10.5194/bg-16-207-2019. https://www.osti.gov/servlets/purl/1610031.
@article{osti_1610031,
title = {Quantifying global N2O emissions from natural ecosystem soils using trait-based biogeochemistry models},
author = {Yu, Tong and Zhuang, Qianlai},
abstractNote = {A group of soil microbes plays an important role in nitrogen cycling and N2O emissions from natural ecosystem soils. Wedeveloped a trait-based biogeochemical model based on an extant process-based biogeochemistry model, the Terrestrial Ecosystem Model (TEM), by incorporating the detailed microbial physiological processes of nitrification. The effect of ammonia-oxidizing Archaea (AOA),ammonia-oxidizing bacteria (AOB), and nitrite-oxidizing bacteria (NOB) was considered in modeling nitrification. Microbial traits, including microbial biomass and density, were explicitly considered. In addition,nitrogen cycling was coupled with carbon dynamics based on stoichiometry theory between carbon and nitrogen. The model was parameterized using observational data and then applied to quantifying global N2O emissions from global terrestrial ecosystem soils from 1990 to 2000. Our estimates of 8.7±1.6 Tg N yr–1 generally agreed with previous estimates during the study period. Tropical forests are a major emitter,accounting for 42 % of the global emissions. The model was more sensitive to temperature and precipitation and less sensitive to soil organic carbon and nitrogen contents. Compared to the model without considering the detailed microbial activities, the new model shows more variations in response to seasonal changes in climate. Our study suggests that further information on microbial diversity and ecophysiology features is needed. The more specific guilds and their traits shall be considered in future soil N2O emission quantifications.},
doi = {10.5194/bg-16-207-2019},
journal = {Biogeosciences (Online)},
number = 2,
volume = 16,
place = {United States},
year = {Mon Jan 21 00:00:00 EST 2019},
month = {Mon Jan 21 00:00:00 EST 2019}
}

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Works referenced in this record:

Carbon cycling in extratropical terrestrial ecosystems of the Northern Hemisphere during the 20th century: a modeling analysis of the influences of soil thermal dynamics
journal, December 2011

  • Zhuang, Q.; McGuire, A. D.; Melillo, J. M.
  • Tellus B: Chemical and Physical Meteorology, Vol. 55, Issue 3
  • DOI: 10.3402/tellusb.v55i3.16368

Some Thoughts on Nutrient Limitation in Algae1
journal, September 1973


Process modeling of controls on nitrogen trace gas emissions from soils worldwide
journal, January 1996

  • Potter, Christopher S.; Matson, Pamela A.; Vitousek, Peter M.
  • Journal of Geophysical Research: Atmospheres, Vol. 101, Issue D1
  • DOI: 10.1029/95JD02028

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
journal, November 2008


UNCSAM: a tool for automating sensitivity and uncertainty analysis
journal, January 1994


Nitrification exhibits Haldane kinetics in an agricultural soil treated with ammonium sulfate or dairy-waste compost: Nitrification kinetics in an agricultural soil
journal, August 2010


Global soil nitrous oxide emissions in a dynamic carbon-nitrogen model
journal, January 2015


Abundance of narG, nirS, nirK, and nosZ Genes of Denitrifying Bacteria during Primary Successions of a Glacier Foreland
journal, September 2006

  • Kandeler, E.; Deiglmayr, K.; Tscherko, D.
  • Applied and Environmental Microbiology, Vol. 72, Issue 9
  • DOI: 10.1128/AEM.00439-06

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
journal, September 2005

  • Francis, C. A.; Roberts, K. J.; Beman, J. M.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 41, p. 14683-14688
  • DOI: 10.1073/pnas.0506625102

Process-based models for forest ecosystem management: current state of the art and challenges for practical implementation
journal, March 2000


Nitrous oxide emissions associated with nitrogen fixation by grain legumes
journal, November 2009


Relationships between soil moisture content and nitrous oxide production during nitrification and denitrification
journal, April 1988

  • Klemedtsson, L.; Svensson, B. H.; Rosswall, T.
  • Biology and Fertility of Soils, Vol. 6, Issue 2
  • DOI: 10.1007/BF00257658

Soil Microbial Activity as Influenced by Temperature Trends and Fluctuations
journal, November 1973

  • Biederbeck, V. O.; Campbell, C. A.
  • Canadian Journal of Soil Science, Vol. 53, Issue 4
  • DOI: 10.4141/cjss73-053

Global methane and nitrous oxide emissions from terrestrial ecosystems due to multiple environmental changes
journal, March 2015

  • Tian, Hanqin; Chen, Guangsheng; Lu, Chaoqun
  • Ecosystem Health and Sustainability, Vol. 1, Issue 1
  • DOI: 10.1890/EHS14-0015.1

Carbon and nitrogen dynamics in bioenergy ecosystems: 1. Model development, validation and sensitivity analysis
journal, August 2013

  • Qin, Zhangcai; Zhuang, Qianlai; Zhu, Xudong
  • GCB Bioenergy, Vol. 6, Issue 6
  • DOI: 10.1111/gcbb.12107

Modelling terrestrial nitrous oxide emissions and implications for climate feedback
journal, August 2012


An inventory of global N2O emissions from the soils of natural terrestrial ecosystems
journal, February 2012


An estimation of the number of cells in the human body
journal, July 2013


Archaea predominate among ammonia-oxidizing prokaryotes in soils
journal, August 2006


Towards a Revised Coefficient for Estimating N2O Emissions from Legumes
journal, November 2005


Comparing mechanistic and empirical model projections of crop suitability and productivity: implications for ecological forecasting: Crop model intercomparison
journal, January 2013

  • Estes, L. D.; Bradley, B. A.; Beukes, H.
  • Global Ecology and Biogeography, Vol. 22, Issue 8
  • DOI: 10.1111/geb.12034

Comparison of temperature effects on soil respiration and bacterial and fungal growth rates
journal, March 2005

  • PietikÃ¥inen, Janna; Pettersson, Marie; Bååth, Erland
  • FEMS Microbiology Ecology, Vol. 52, Issue 1
  • DOI: 10.1016/j.femsec.2004.10.002

Atmospheric emissions and trends of nitrous oxide deduced from 10 years of ALE–GAGE data
journal, January 1990

  • Prinn, R.; Cunnold, D.; Rasmussen, R.
  • Journal of Geophysical Research, Vol. 95, Issue D11
  • DOI: 10.1029/JD095iD11p18369

Trait-Based Representation of Biological Nitrification: Model Development, Testing, and Predicted Community Composition
journal, January 2012

  • Bouskill, Nicholas J.; Tang, Jinyun; Riley, William J.
  • Frontiers in Microbiology, Vol. 3
  • DOI: 10.3389/fmicb.2012.00364

The Global N 2 O Model Intercomparison Project
journal, June 2018

  • Tian, Hanqin; Yang, Jia; Lu, Chaoqun
  • Bulletin of the American Meteorological Society, Vol. 99, Issue 6
  • DOI: 10.1175/BAMS-D-17-0212.1

Effects of soil moisture and temperature on NO, NO 2 , and N 2 O emissions from European forest soils
journal, January 2004

  • Schindlbacher, Andreas
  • Journal of Geophysical Research, Vol. 109, Issue D17
  • DOI: 10.1029/2004JD004590

Ammonia-Oxidizing Bacteria: A Model for Molecular Microbial Ecology
journal, October 2001


Changes in soil microbial community, enzyme activities and organic matter fractions under long-term straw return in north-central China
journal, January 2016


A review of literature on inorganic nitrogen metabolism in microorganisms
journal, June 1970


Inventories and scenarios of nitrous oxide emissions
journal, October 2014


Diversity of Nitrite Reductase (nirK and nirS) Gene Fragments in Forested Upland and Wetland Soils
journal, April 2002


Computing land use emissions of greenhouse gases
journal, July 1994

  • Kreileman, G. J. J.; Bouwman, A. F.
  • Water, Air, & Soil Pollution, Vol. 76, Issue 1-2
  • DOI: 10.1007/BF00478341

Global modeling of soil nitrous oxide emissions from natural processes: GLOBAL SOIL NITROUS OXIDE EMISSIONS
journal, September 2013

  • Saikawa, E.; Schlosser, C. A.; Prinn, R. G.
  • Global Biogeochemical Cycles, Vol. 27, Issue 3
  • DOI: 10.1002/gbc.20087

A new theory of plant-microbe nutrient competition resolves inconsistencies between observations and model predictions
journal, March 2017

  • Zhu, Qing; Riley, William J.; Tang, Jinyun
  • Ecological Applications, Vol. 27, Issue 3
  • DOI: 10.1002/eap.1490

Global analysis of the potential for N 2 O production in natural soils
journal, September 1993

  • Bouwman, A. F.; Fung, I.; Matthews, E.
  • Global Biogeochemical Cycles, Vol. 7, Issue 3
  • DOI: 10.1029/93GB01186

The impact of temperature on nitrification rate in fixed film biofilters
journal, November 2002


Interactions between carbon and nitrogen dynamics in estimating net primary productivity for potential vegetation in North America
journal, June 1992

  • McGuire, A. D.; Melillo, J. M.; Joyce, L. A.
  • Global Biogeochemical Cycles, Vol. 6, Issue 2
  • DOI: 10.1029/92GB00219

Determination of Biological Nitrogen Fixation Induced N 2 O Emission from Arable Soil by Using a Closed Chamber Technique
journal, January 2014


Soil microbial organic nitrogen uptake is regulated by carbon availability
journal, October 2014


Environmental Genome Shotgun Sequencing of the Sargasso Sea
journal, April 2004


Fungal denitrification and nitric oxide reductase cytochrome P450nor
journal, May 2012

  • Shoun, Hirofumi; Fushinobu, Shinya; Jiang, Li
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 367, Issue 1593
  • DOI: 10.1098/rstb.2011.0335

Global climate change and terrestrial net primary production
journal, May 1993

  • Melillo, Jerry M.; McGuire, A. David; Kicklighter, David W.
  • Nature, Vol. 363, Issue 6426
  • DOI: 10.1038/363234a0

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
journal, March 2008

  • Brochier-Armanet, Céline; Boussau, Bastien; Gribaldo, Simonetta
  • Nature Reviews Microbiology, Vol. 6, Issue 3
  • DOI: 10.1038/nrmicro1852

Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers
journal, December 2009

  • Castro, H. F.; Classen, A. T.; Austin, E. E.
  • Applied and Environmental Microbiology, Vol. 76, Issue 4
  • DOI: 10.1128/AEM.02874-09

New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation
journal, May 2007

  • Francis, Christopher A.; Beman, J. Michael; Kuypers, Marcel M. M.
  • The ISME Journal, Vol. 1, Issue 1
  • DOI: 10.1038/ismej.2007.8

Nitrogen fixation, hydrogen production and N 2 O emissions
journal, August 2014

  • Flynn, Bryan; Graham, Amanda; Scott, Neal
  • Canadian Journal of Plant Science, Vol. 94, Issue 6
  • DOI: 10.4141/cjps2013-210

Oxygen diffusion in soils: Understanding the factors and processes needed for modeling
journal, January 2015


Closing the global N 2 O budget: A retrospective analysis 1500-1994
journal, March 1999

  • Kroeze, Carolien; Mosier, Arvin; Bouwman, Lex
  • Global Biogeochemical Cycles, Vol. 13, Issue 1
  • DOI: 10.1029/1998GB900020

Environmental factors shaping the ecological niches of ammonia-oxidizing archaea
journal, September 2009


Effect of Temperature on Denitrification Rate in Soils
journal, September 1975


Nitrate reduction and the nitrogen cycle in archaea
journal, November 2004


The Microbial Engines That Drive Earth's Biogeochemical Cycles
journal, May 2008


Elevated CO2 and O3 Alter Soil Nitrogen Transformations beneath Trembling Aspen, Paper Birch, and Sugar Maple
journal, December 2006


Convergence in the relationship of CO 2 and N 2 O exchanges between soil and atmosphere within terrestrial ecosystems
journal, July 2008


Mechanisms for soil moisture effects on activity of nitrifying bacteria.
journal, January 1995


Global air emission inventories for anthropogenic sources of NOx, NH3 and N2O in 1990
journal, January 1998


Inventories and scenarios of nitrous oxide emissions
text, January 2014


Works referencing / citing this record:

Characterization of atmospheric nitrous oxide emissions from global agricultural soils
journal, November 2019