A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
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journal
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June 2004 |
A Site- and Time-Heterogeneous Model of Amino Acid Replacement
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journal
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January 2008 |
Phylogeny and Self-Splicing Ability of the Plastid tRNA-Leu Group I Intron
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journal
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December 2003 |
An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids
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journal
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February 2017 |
The plastid ancestor originated among one of the major cyanobacterial lineages
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journal
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September 2014 |
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
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journal
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January 2004 |
Investigating Deep Phylogenetic Relationships among Cyanobacteria and Plastids by Small Subunit rRNA Sequence Analysis
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journal
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July 1999 |
Compilation of tRNA sequences and sequences of tRNA genes
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journal
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January 1998 |
Estimating the timing of early eukaryotic diversification with multigene molecular clocks
|
journal
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August 2011 |
An Improved General Amino Acid Replacement Matrix
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journal
|
April 2008 |
Genes of Cyanobacterial Origin in Plant Nuclear Genomes Point to a Heterocyst-Forming Plastid Ancestor
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journal
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February 2008 |
Large-Scale Phylogenomic Analyses Indicate a Deep Origin of Primary Plastids within Cyanobacteria
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journal
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June 2011 |
RNA sequence analysis using covariance models
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journal
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January 1994 |
Initiator tRNA genes template the 3′ CCA end at high frequencies in bacteria
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journal
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December 2016 |
Evolution: Red Algal Genome Affirms a Common Origin of All Plastids
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journal
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July 2004 |
Annotated English translation of Mereschkowsky's 1905 paper ‘Über Natur und Ursprung der Chromatophoren imPflanzenreiche’
|
journal
|
August 1999 |
The evolution of glycogen and starch metabolism in eukaryotes gives molecular clues to understand the establishment of plastid endosymbiosis
|
journal
|
January 2011 |
The origin and early evolution of plants on land
|
journal
|
September 1997 |
tRNA Signatures Reveal a Polyphyletic Origin of SAR11 Strains among Alphaproteobacteria
|
journal
|
February 2014 |
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
|
journal
|
March 1997 |
Computational analysis of tRNA identity
|
journal
|
November 2009 |
Reductive genome evolution at both ends of the bacterial population size spectrum
|
journal
|
September 2014 |
Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades
|
journal
|
July 2009 |
The Evolutionary Origin of a Terrestrial Flora
|
journal
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October 2015 |
Intraphylum Diversity and Complex Evolution of Cyanobacterial Aminoacyl-tRNA Synthetases
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journal
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August 2008 |
On Reduced Amino Acid Alphabets for Phylogenetic Inference
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journal
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May 2007 |
Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins
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journal
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May 2014 |
Evolutionary constraints on the plastid tRNA set decoding methionine and isoleucine
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journal
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May 2012 |
A new criterion and method for amino acid classification
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journal
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May 2004 |
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
|
journal
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December 2012 |
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
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journal
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October 2009 |
Plastid establishment did not require a chlamydial partner
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journal
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March 2015 |
A brief review of molecular information theory
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journal
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September 2010 |
Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos
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journal
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February 2006 |
PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
|
journal
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April 2013 |
Match fitness landscapes for macromolecular interaction networks: Selection for translational accuracy and rate can displace tRNA-binding interfaces of non-cognate aminoacyl-tRNA synthetases
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journal
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October 2019 |
Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants
|
journal
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October 1999 |
Computing Bayes Factors Using Thermodynamic Integration
|
journal
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April 2006 |
Opportunities and obstacles for deep learning in biology and medicine
|
journal
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April 2018 |
Modeling Compositional Heterogeneity
|
journal
|
June 2004 |
Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
|
journal
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June 2013 |
The gain of two chloroplast tRNA introns marks the green algal ancestors of land plants
|
journal
|
May 1990 |
The Phylogeny of Plastids: a Review Based on Comparisons of Small-Subunit Ribosomal rna Coding Regions
|
journal
|
August 1995 |
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
|
journal
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February 2004 |
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
|
journal
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January 2007 |
Compilation and comparison of transfer RNA genes from tobacco chloroplasts
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journal
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January 1989 |
The Revised Classification of Eukaryotes
|
journal
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September 2012 |
TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase
|
journal
|
February 2006 |
Displaying the in formation contents of structural RNA alignments: the structure logos
|
journal
|
January 1997 |
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
|
journal
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August 2003 |
Origin and early evolution of photosynthetic eukaryotes in freshwater environments: reinterpreting proterozoic paleobiology and biogeochemical processes in light of trait evolution
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journal
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September 2013 |
Early photosynthetic eukaryotes inhabited low-salinity habitats
|
journal
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August 2017 |
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
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journal
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August 2003 |
FAST: FAST Analysis of Sequences Toolbox
|
journal
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May 2015 |
Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids
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journal
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December 2012 |
Difficult phylogenetic questions: more data, maybe; better methods, certainly
|
journal
|
December 2011 |
Dating the cyanobacterial ancestor of the chloroplast
|
journal
|
March 2010 |
Metabolic Symbiosis and the Birth of the Plant Kingdom
|
journal
|
January 2008 |
Annotated English translation of Mereschkowsky's 1905 paper ‘Über Natur und Ursprung der Chromatophoren im Pflanzenreiche’
|
journal
|
August 1999 |
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
|
journal
|
March 1997 |
Dating the cyanobacterial ancestor of the chloroplast
|
journal
|
August 2009 |
Metabolic Symbiosis and the Birth of the Plant Kingdom
|
journal
|
February 2008 |
Opportunities and obstacles for deep learning in biology and medicine
|
posted_content
|
January 2018 |
Compilation of tRNA sequences and sequences of tRNA genes
|
journal
|
December 2004 |
Compilation of tRNA sequences and sequences of tRNA genes
|
journal
|
January 1989 |
Evolution: Red Algal Genome Affirms a Common Origin of All Plastids
|
journal
|
July 2004 |
The Evolutionary Origin of a Terrestrial Flora
|
journal
|
October 2015 |
Computational analysis of tRNA identity
|
journal
|
November 2009 |
A new criterion and method for amino acid classification
|
journal
|
May 2004 |
The gain of two chloroplast tRNA introns marks the green algal ancestors of land plants
|
journal
|
May 1990 |
The origin and early evolution of plants on land
|
journal
|
September 1997 |
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
|
journal
|
February 2004 |
Reductive genome evolution at both ends of the bacterial population size spectrum
|
journal
|
September 2014 |
Estimating the timing of early eukaryotic diversification with multigene molecular clocks
|
journal
|
August 2011 |
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
|
journal
|
December 2012 |
Early photosynthetic eukaryotes inhabited low-salinity habitats
|
journal
|
August 2017 |
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
|
journal
|
August 2003 |
Modeling Compositional Heterogeneity
|
journal
|
June 2004 |
Computing Bayes Factors Using Thermodynamic Integration
|
journal
|
April 2006 |
Displaying the in formation contents of structural RNA alignments: the structure logos
|
journal
|
January 1997 |
Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids
|
journal
|
December 2012 |
The evolution of glycogen and starch metabolism in eukaryotes gives molecular clues to understand the establishment of plastid endosymbiosis
|
journal
|
January 2011 |
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
|
journal
|
June 2004 |
Genes of Cyanobacterial Origin in Plant Nuclear Genomes Point to a Heterocyst-Forming Plastid Ancestor
|
journal
|
February 2008 |
Metabolic Symbiosis and the Birth of the Plant Kingdom
|
journal
|
February 2008 |
Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins
|
journal
|
May 2014 |
RNA sequence analysis using covariance models
|
journal
|
January 1994 |
Compilation of tRNA sequences and sequences of tRNA genes
|
journal
|
January 1996 |
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
|
journal
|
March 1997 |
Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants
|
journal
|
October 1999 |
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
|
journal
|
January 2004 |
PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
|
journal
|
April 2013 |
Opportunities and obstacles for deep learning in biology and medicine
|
journal
|
April 2018 |
Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades
|
journal
|
July 2009 |
The Phylogeny of Plastids: a Review Based on Comparisons of Small-Subunit Ribosomal rna Coding Regions
|
journal
|
August 1995 |
The Revised Classification of Eukaryotes
|
journal
|
September 2012 |
tRNA Signatures Reveal a Polyphyletic Origin of SAR11 Strains among Alphaproteobacteria
|
journal
|
February 2014 |