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Seafaring in the 21St Century: The Malaspina 2010 Circumnavigation Expedition
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January 2015 |
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ggplot2
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book
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January 2009 |
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
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June 1980 |
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Ectyoplasia ferox, an Experimentally Tractable Model for Vertical Microbial Transmission in Marine Sponges
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December 2012 |
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The Relative Abundance and Transcriptional Activity of Marine Sponge-Associated Microorganisms Emphasizing Groups Involved in Sulfur Cycle
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September 2016 |
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Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
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March 2015 |
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BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
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February 2016 |
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Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
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June 2010 |
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Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
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October 2011 |
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‘Sponge-specific’ bacteria are widespread (but rare) in diverse marine environments
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October 2012 |
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Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress
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January 2013 |
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Down under the tunic: bacterial biodiversity hotspots and widespread ammonia-oxidizing archaea in coral reef ascidians
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October 2013 |
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Host-specificity among abundant and rare taxa in the sponge microbiome
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January 2014 |
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Implications of streamlining theory for microbial ecology
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April 2014 |
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Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization
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July 2017 |
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Insights into the phylogeny and coding potential of microbial dark matter
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July 2013 |
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Unusual biology across a group comprising more than 15% of domain Bacteria
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June 2015 |
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SAR11 bacteria linked to ocean anoxia and nitrogen loss
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August 2016 |
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Diversity, structure and convergent evolution of the global sponge microbiome
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June 2016 |
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Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
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October 2016 |
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SignalP 4.0: discriminating signal peptides from transmembrane regions
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September 2011 |
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A new view of the tree of life
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April 2016 |
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Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
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April 2014 |
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Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles
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October 2018 |
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Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
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July 2017 |
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High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
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November 2018 |
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Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
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December 2017 |
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Host-specific assembly of sponge-associated prokaryotes at high taxonomic ranks
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May 2017 |
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Open science resources for the discovery and analysis of Tara Oceans data
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May 2015 |
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The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
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January 2018 |
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STRAP Acts as a Scaffolding Protein in Controlling the TLR2/4 Signaling Pathway
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December 2016 |
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Effects of reciprocal transplantation on the microbiome and putative nitrogen cycling functions of the intertidal sponge, Hymeniacidon heliophila
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February 2017 |
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Identification of a NIPSNAP homologue as host cell target for Salmonella virulence protein SpiC
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November 2002 |
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Genomic insights that advance the species definition for prokaryotes
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February 2005 |
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Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time
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May 2007 |
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Comprehensive human genome amplification using multiple displacement amplification
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April 2002 |
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Sinking particles promote vertical connectivity in the ocean microbiome
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July 2018 |
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Fast and accurate long-read alignment with Burrows–Wheeler transform
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January 2010 |
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SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
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May 2012 |
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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
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March 2016 |
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Effective--a database of predicted secreted bacterial proteins
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November 2010 |
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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November 2012 |
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EffectiveDB—updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems
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November 2015 |
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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
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April 2016 |
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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October 2018 |
The bacterial species definition in the genomic era
- Konstantinidis, Konstantinos T.; Ramette, Alban; Tiedje, James M.
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Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, Issue 1475
https://doi.org/10.1098/rstb.2006.1920
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October 2006 |
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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May 2015 |
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Pyrroloquinoline Quinone Is a Plant Growth Promotion Factor Produced by Pseudomonas fluorescens B16
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November 2007 |
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The Montastraea faveolata microbiome: ecological and temporal influences on a Caribbean reef-building coral in decline: The Montastraea faveolata microbiome
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June 2013 |
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Phylogeny and genomics of SAUL, an enigmatic bacterial lineage frequently associated with marine sponges: Phylogeny and genomics of SAUL
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November 2017 |
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Bacterial secreted effectors and caspase-3 interactions: Effector modulation of caspase-3
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October 2014 |
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Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
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October 2009 |
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Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms: Sponge-associated microorganisms
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December 2011 |
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The larval sponge holobiont exhibits high thermal tolerance: Larval holobionts exhibit high thermal tolerance
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October 2011 |
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Ankyrin-repeat proteins from sponge symbionts modulate amoebal phagocytosis
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August 2013 |
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Temporal dynamics of prokaryotic communities in the marine sponge Sarcotragus spinosulus
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June 2014 |
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Evolution and function of eukaryotic-like proteins from sponge symbionts
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September 2016 |
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GENETICS: Evolutionary Insights from Sponges
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June 2007 |
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Structure and function of the global ocean microbiome
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May 2015 |
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Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
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November 2017 |
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Global Distribution Patterns and Pangenomic Diversity of the Candidate Phylum “Latescibacteria” (WS3)
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March 2017 |
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Sponge-Associated Bacteria Are Strictly Maintained in Two Closely Related but Geographically Distant Sponge Hosts
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August 2011 |
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The Fibronectin Type 3-Like Repeat from the Clostridium thermocellum Cellobiohydrolase CbhA Promotes Hydrolysis of Cellulose by Modifying Its Surface
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September 2002 |
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The Sponge Hologenome
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April 2016 |
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Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico “Dead Zone”
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September 2017 |
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Sponge-Associated Microorganisms: Evolution, Ecology, and Biotechnological Potential
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June 2007 |
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YERSINIA OUTER PROTEINS: Role in Modulation of Host Cell Signaling Responses and Pathogenesis
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October 2005 |
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NEWLY DISCOVERED REDOX COFACTORS: Possible Nutritional, Medical, and Pharmacological Relevance to Higher Animals
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July 1998 |
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The sponge holobiont in a changing ocean: from microbes to ecosystems
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March 2018 |
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Threatened Corals Provide Underexplored Microbial Habitats
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March 2010 |
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CREST – Classification Resources for Environmental Sequence Tags
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November 2012 |
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Phylogenetically and Spatially Close Marine Sponges Harbour Divergent Bacterial Communities
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December 2012 |
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The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
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January 2014 |
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Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment
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March 2015 |
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In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)
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June 2015 |
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Marine Polysaccharide Sulfatases
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January 2017 |
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Two distinct microbial communities revealed in the sponge Cinachyrella
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November 2014 |
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An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes
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November 2016 |
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Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity
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May 2017 |
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Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla
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November 2017 |
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Bacterial Succession on Sinking Particles in the Ocean's Interior
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November 2017 |
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Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium
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December 2017 |
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Ternary WD40 Repeat-Containing Protein Complexes: Evolution, Composition and Roles in Plant Immunity
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January 2016 |