DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Ultrastructural and SINS analysis of the cell wall integrity response of Aspergillus nidulans to the absence of galactofuranose

Abstract

With lethal opportunistic fungal infections on the rise, it is imperative to explore new methods to examine virulence mechanisms. The fungal cell wall is crucial for both the virulence and viability of Aspergillus nidulans. One wall component, Galf, has been shown to contribute to important fungal processes, integrity of the cell wall and pathogenesis. Here in this paper, we explore gene deletion strains lacking the penultimate enzyme in Galf biosynthesis (ugmAΔ) and the protein that transports Galf for incorporation into the cell wall (ugtAΔ). In applying gene deletion technology to the problem of cell wall integrity, we have employed multiple micro- and nano-scale imaging tools, including confocal fluorescence microscopy, electron microscopy, X-Ray fluorescence and atomic force microscopy. Atomic force microscopy allows quantification of ultrastructural cell wall architecture while near-field infrared spectroscopy provides spatially resolved chemical signatures, both at the nanoscale. Here, for the first time, we demonstrate correlative data collection with these two emerging modalities for the multiplexed in situ study of the nanoscale architecture and chemical composition of fungal cell walls.

Authors:
ORCiD logo [1]; ORCiD logo [1];  [2]; ORCiD logo [1]; ORCiD logo [2];  [3];  [4]; ORCiD logo [5]; ORCiD logo [1]
  1. Univ. of Manitoba, Winnipeg (Canada)
  2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Advanced Light Source (ALS)
  3. Neaspec GmbH, Martinsried (Germany)
  4. Univ. of Saskatchewan, Saskatoon, SK (Canada)
  5. Univ. of Regina, Regina (Canada)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC); Natural Sciences and Engineering Research Council of Canada (NSERC); University of Manitoba
OSTI Identifier:
1601196
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Analyst
Additional Journal Information:
Journal Volume: 144; Journal Issue: 3; Journal ID: ISSN 0003-2654
Publisher:
Royal Society of Chemistry
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Bakir, Görkem, Girouard, Benoit E., Johns, Robert W., Findlay, Catherine R. -J., Bechtel, Hans A., Eisele, Max, Kaminskyj, Susan G. W., Dahms, Tanya E. S., and Gough, Kathleen M. Ultrastructural and SINS analysis of the cell wall integrity response of Aspergillus nidulans to the absence of galactofuranose. United States: N. p., 2018. Web. doi:10.1039/c8an01591k.
Bakir, Görkem, Girouard, Benoit E., Johns, Robert W., Findlay, Catherine R. -J., Bechtel, Hans A., Eisele, Max, Kaminskyj, Susan G. W., Dahms, Tanya E. S., & Gough, Kathleen M. Ultrastructural and SINS analysis of the cell wall integrity response of Aspergillus nidulans to the absence of galactofuranose. United States. https://doi.org/10.1039/c8an01591k
Bakir, Görkem, Girouard, Benoit E., Johns, Robert W., Findlay, Catherine R. -J., Bechtel, Hans A., Eisele, Max, Kaminskyj, Susan G. W., Dahms, Tanya E. S., and Gough, Kathleen M. Thu . "Ultrastructural and SINS analysis of the cell wall integrity response of Aspergillus nidulans to the absence of galactofuranose". United States. https://doi.org/10.1039/c8an01591k. https://www.osti.gov/servlets/purl/1601196.
@article{osti_1601196,
title = {Ultrastructural and SINS analysis of the cell wall integrity response of Aspergillus nidulans to the absence of galactofuranose},
author = {Bakir, Görkem and Girouard, Benoit E. and Johns, Robert W. and Findlay, Catherine R. -J. and Bechtel, Hans A. and Eisele, Max and Kaminskyj, Susan G. W. and Dahms, Tanya E. S. and Gough, Kathleen M.},
abstractNote = {With lethal opportunistic fungal infections on the rise, it is imperative to explore new methods to examine virulence mechanisms. The fungal cell wall is crucial for both the virulence and viability of Aspergillus nidulans. One wall component, Galf, has been shown to contribute to important fungal processes, integrity of the cell wall and pathogenesis. Here in this paper, we explore gene deletion strains lacking the penultimate enzyme in Galf biosynthesis (ugmAΔ) and the protein that transports Galf for incorporation into the cell wall (ugtAΔ). In applying gene deletion technology to the problem of cell wall integrity, we have employed multiple micro- and nano-scale imaging tools, including confocal fluorescence microscopy, electron microscopy, X-Ray fluorescence and atomic force microscopy. Atomic force microscopy allows quantification of ultrastructural cell wall architecture while near-field infrared spectroscopy provides spatially resolved chemical signatures, both at the nanoscale. Here, for the first time, we demonstrate correlative data collection with these two emerging modalities for the multiplexed in situ study of the nanoscale architecture and chemical composition of fungal cell walls.},
doi = {10.1039/c8an01591k},
journal = {Analyst},
number = 3,
volume = 144,
place = {United States},
year = {Thu Nov 01 00:00:00 EDT 2018},
month = {Thu Nov 01 00:00:00 EDT 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 4 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Nanoscale-resolved chemical identification of thin organic films using infrared near-field spectroscopy and standard Fourier transform infrared references
journal, January 2015

  • Mastel, Stefan; Govyadinov, Alexander A.; de Oliveira, Thales V. A. G.
  • Applied Physics Letters, Vol. 106, Issue 2
  • DOI: 10.1063/1.4905507

Galactofuranose containing molecules in Aspergillus fumigatus
journal, January 2009


Expression of agsA, one of five 1,3-α-d-glucan synthase-encoding genes in Aspergillus niger, is induced in response to cell wall stress
journal, February 2005

  • Damveld, Robbert A.; vanKuyk, Patricia A.; Arentshorst, Mark
  • Fungal Genetics and Biology, Vol. 42, Issue 2
  • DOI: 10.1016/j.fgb.2004.11.006

Time Fluctuations and Imaging in the SERS Spectra of Fungal Hypha Grown on Nanostructured Substrates
journal, November 2007

  • Szeghalmi, Adriana; Kaminskyj, Susan; Rösch, Petra
  • The Journal of Physical Chemistry B, Vol. 111, Issue 44
  • DOI: 10.1021/jp075422a

Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans
journal, March 2009

  • de Groot, Piet W. J.; Brandt, Bernd W.; Horiuchi, Hiroyuki
  • Fungal Genetics and Biology, Vol. 46, Issue 1
  • DOI: 10.1016/j.fgb.2008.07.022

Galactofuranose in eukaryotes: aspects of biosynthesis and functional impact
journal, September 2011


High spatial resolution analysis of fungal cell biochemistry – bridging the analytical gap using synchrotron FTIR spectromicroscopy
journal, July 2008


Characterization of mannitol in Curvularia protuberata hyphae by FTIR and Raman spectromicroscopy
journal, January 2010

  • Isenor, Merrill; Kaminskyj, Susan G. W.; Rodriguez, Russell J.
  • The Analyst, Vol. 135, Issue 12
  • DOI: 10.1039/c0an00534g

Galactofuranose metabolism: a potential target for antimicrobial chemotherapy
journal, February 2003

  • Turco, S. J.; Pedersen, L. L.
  • Cellular and Molecular Life Sciences (CMLS), Vol. 60, Issue 2
  • DOI: 10.1007/s000180300021

Biosynthesis of galactomannans found in filamentous fungi belonging to Pezizomycotina
journal, January 2018


Roles of the Aspergillus nidulans UDP-galactofuranose transporter, UgtA in hyphal morphogenesis, cell wall architecture, conidiation, and drug sensitivity
journal, September 2011

  • Afroz, Sharmin; El-Ganiny, Amira M.; Sanders, David A. R.
  • Fungal Genetics and Biology, Vol. 48, Issue 9
  • DOI: 10.1016/j.fgb.2011.06.001

Protein O -Glycosylation in Fungi: Diverse Structures and Multiple Functions
journal, June 2007

  • Goto, Masatoshi
  • Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 6
  • DOI: 10.1271/bbb.70080

Aspergillus nidulans galactofuranose biosynthesis affects antifungal drug sensitivity
journal, December 2012

  • Alam, Md Kausar; El-Ganiny, Amira M.; Afroz, Sharmin
  • Fungal Genetics and Biology, Vol. 49, Issue 12
  • DOI: 10.1016/j.fgb.2012.08.010

A synchrotron FTIR microspectroscopy investigation of fungal hyphae grown under optimal and stressed conditions
journal, November 2006

  • Szeghalmi, Adriana; Kaminskyj, Susan; Gough, Kathleen M.
  • Analytical and Bioanalytical Chemistry, Vol. 387, Issue 5
  • DOI: 10.1007/s00216-006-0850-2

Structural analysis and mapping of individual protein complexes by infrared nanospectroscopy
journal, December 2013

  • Amenabar, Iban; Poly, Simon; Nuansing, Wiwat
  • Nature Communications, Vol. 4, Issue 1
  • DOI: 10.1038/ncomms3890

High spatial resolution (1.1 μm and 20 nm) FTIR polarization contrast imaging reveals pre-rupture disorder in damaged tendon
journal, January 2016

  • Wiens, Richard; Findlay, Catherine R.; Baldwin, Samuel G.
  • Faraday Discussions, Vol. 187
  • DOI: 10.1039/C5FD00168D

Aspergillus nidulans UDP-galactopyranose mutase, encoded by ugmA plays key roles in colony growth, hyphal morphogensis, and conidiation
journal, December 2008

  • El-Ganiny, Amira M.; Sanders, David A. R.; Kaminskyj, Susan G. W.
  • Fungal Genetics and Biology, Vol. 45, Issue 12
  • DOI: 10.1016/j.fgb.2008.09.008

Proof-of-principle for SERS imaging of Aspergillus nidulans hyphae using in vivo synthesis of gold nanoparticles
journal, January 2012

  • Prusinkiewicz, Martin A.; Farazkhorasani, Fatemeh; Dynes, James J.
  • The Analyst, Vol. 137, Issue 21
  • DOI: 10.1039/c2an35620a

The Aspergillus fumigatus cell wall integrity signaling pathway: drug target, compensatory pathways, and virulence
journal, April 2015


Microbial (1→3)-β-d-glucans, their preparation, physico-chemical characterization and immunomodulatory activity
journal, March 1999


Epidemiology and Outcomes of Hospitalizations With Invasive Aspergillosis in the United States, 2009–2013
journal, April 2018

  • Zilberberg, Marya D.; Nathanson, Brian H.; Harrington, Rachel
  • Clinical Infectious Diseases, Vol. 67, Issue 5
  • DOI: 10.1093/cid/ciy181

Protein kinase C regulates the expression of cell wall-related genes in RlmA-dependent and independent manners in Aspergillus nidulans
journal, October 2014

  • Katayama, Takuya; Ohta, Akinori; Horiuchi, Hiroyuki
  • Bioscience, Biotechnology, and Biochemistry, Vol. 79, Issue 2
  • DOI: 10.1080/09168451.2014.973365

In situ imaging of usnic acid in selected Cladonia spp. by vibrational spectroscopy
journal, January 2010

  • Liao, Catherine; Piercey-Normore, Michele D.; Sorensen, John L.
  • The Analyst, Vol. 135, Issue 12
  • DOI: 10.1039/c0an00533a

Ultrabroadband infrared nanospectroscopic imaging
journal, May 2014

  • Bechtel, H. A.; Muller, E. A.; Olmon, R. L.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 20
  • DOI: 10.1073/pnas.1400502111

Physicochemical characterization of chitin from the Mediterranean flour moth, Ephestia kuehniella Zeller (Lepidoptera: Pyralidae)
journal, July 2017

  • Mehranian, Mahmoud; Pourabad, Reza Farshbaf; Bashir, Nemat Sokhandan
  • Journal of Macromolecular Science, Part A, Vol. 54, Issue 10
  • DOI: 10.1080/10601325.2017.1332461

Contribution of Galactofuranose to the Virulence of the Opportunistic Pathogen Aspergillus fumigatus
journal, June 2008

  • Schmalhorst, Philipp S.; Krappmann, Sven; Vervecken, Wouter
  • Eukaryotic Cell, Vol. 7, Issue 8
  • DOI: 10.1128/EC.00109-08

Nuances of new anti- Aspergillus antifungals
journal, January 2005


Nanoscale probing of electron-regulated structural transitions in silk proteins by near-field IR imaging and nano-spectroscopy
journal, October 2016

  • Qin, Nan; Zhang, Shaoqing; Jiang, Jianjuan
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms13079

The cell wall: a carbohydrate armour for the fungal cell
journal, October 2007


Nano-Chemical Infrared Imaging of Membrane Proteins in Lipid Bilayers
journal, November 2013

  • Berweger, Samuel; Nguyen, Duc M.; Muller, Eric A.
  • Journal of the American Chemical Society, Vol. 135, Issue 49
  • DOI: 10.1021/ja409815g

Quantifying the Importance of Galactofuranose in Aspergillus nidulans Hyphal Wall Surface Organization by Atomic Force Microscopy
journal, February 2011

  • Paul, Biplab C.; El-Ganiny, Amira M.; Abbas, Mariam
  • Eukaryotic Cell, Vol. 10, Issue 5
  • DOI: 10.1128/EC.00304-10

A sensitive method for examining whole-cell biochemical composition in single cells of filamentous fungi using synchrotron FTIR spectromicroscopy
journal, March 2008


Cell wall structure and biogenesis in Aspergillus species
journal, February 2016


X-ray microfluorescence (μXRF) imaging of Aspergillus nidulans cell wall mutants reveals biochemical changes due to gene deletions
journal, March 2014

  • Rak, Margaret; Salome, Murielle; Kaminskyj, Susan G. W.
  • Analytical and Bioanalytical Chemistry, Vol. 406, Issue 12
  • DOI: 10.1007/s00216-014-7726-7

Infrared Chemical Nano-Imaging: Accessing Structure, Coupling, and Dynamics on Molecular Length Scales
journal, March 2015

  • Muller, Eric A.; Pollard, Benjamin; Raschke, Markus B.
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 7
  • DOI: 10.1021/acs.jpclett.5b00108

Near-field microscopy by elastic light scattering from a tip
journal, April 2004

  • Keilmann, Fritz; Hillenbrand, Rainer
  • Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences, Vol. 362, Issue 1817
  • DOI: 10.1098/rsta.2003.1347

Our Paths Might Cross: the Role of the Fungal Cell Wall Integrity Pathway in Stress Response and Cross Talk with Other Stress Response Pathways
journal, August 2009

  • Fuchs, Beth Burgwyn; Mylonakis, Eleftherios
  • Eukaryotic Cell, Vol. 8, Issue 11
  • DOI: 10.1128/EC.00193-09

MpkA-Dependent and -Independent Cell Wall Integrity Signaling in Aspergillus nidulans
journal, June 2007

  • Fujioka, Tomonori; Mizutani, Osamu; Furukawa, Kentaro
  • Eukaryotic Cell, Vol. 6, Issue 8
  • DOI: 10.1128/EC.00281-06