Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes

Kotak, Malini; Lin, Jonathan Y.; Isanapong, Jantiya; Rodrigues, Jorge L.  M.; Baltrus, David A.

doi:10.1128/MRA.01192-19

Title: Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes

Abstract

Here, we report the high-quality draft genome sequences of Opitutaceae sp. strains TAV3 and TAV4, which were isolated from the hindgut of the wood-feeding termite Reticulitermes flavipes. Using a combination of Illumina and PacBio sequencing, we constructed nearly complete assemblies totaling 5.84 and 5.91 Mbp in length for strains TAV3 and TAV4, respectively. In addition, we report an in silico analysis of potential lignocellulose-digesting enzymes present in these strains.

Authors:

Kotak, Malini ^[1];

^[2]; Isanapong, Jantiya ^[3];

^[4]; Baltrus, David A. ^[5]

Univ. of Texas, Arlington, TX (United States)
Univ. of California, Davis, CA (United States)
King Mongkut’s Univ. of Technology, Bangkok (Thailand)
Univ. of California, Davis, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Univ. of Arizona, Tucson, AZ (United States)

Publication Date:: 2020-01-09

Research Org.:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Org.:: USDOE Office of Science (SC); National Institutes of Health (NIH)

OSTI Identifier:: 1599847

Grant/Contract Number:: AC02-05CH11231; 1S10OD010786-01

Resource Type:: Accepted Manuscript

Journal Name:: Microbiology Resource Announcements

Additional Journal Information:: Journal Volume: 9; Journal Issue: 2; Journal ID: ISSN 2576-098X

Publisher:: SSPA - American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES

Citation Formats


                    Kotak, Malini, Lin, Jonathan Y., Isanapong, Jantiya, Rodrigues, Jorge L.  M., and Baltrus, David A. Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes.  United States: N. p., 2020. 
Web.  doi:10.1128/MRA.01192-19.

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                    Kotak, Malini, Lin, Jonathan Y., Isanapong, Jantiya, Rodrigues, Jorge L.  M., & Baltrus, David A. Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes.  United States.  https://doi.org/10.1128/MRA.01192-19

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                    Kotak, Malini, Lin, Jonathan Y., Isanapong, Jantiya, Rodrigues, Jorge L.  M., and Baltrus, David A. Thu .  
"Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes".  United States.  https://doi.org/10.1128/MRA.01192-19.  https://www.osti.gov/servlets/purl/1599847.

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@article{osti_1599847,

  title        = {Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes},

  author       = {Kotak, Malini and Lin, Jonathan Y. and Isanapong, Jantiya and Rodrigues, Jorge L.  M. and Baltrus, David A.},

  abstractNote = {Here, we report the high-quality draft genome sequences of Opitutaceae sp. strains TAV3 and TAV4, which were isolated from the hindgut of the wood-feeding termite Reticulitermes flavipes. Using a combination of Illumina and PacBio sequencing, we constructed nearly complete assemblies totaling 5.84 and 5.91 Mbp in length for strains TAV3 and TAV4, respectively. In addition, we report an in silico analysis of potential lignocellulose-digesting enzymes present in these strains.},

  doi          = {10.1128/MRA.01192-19},

  journal      = {Microbiology Resource Announcements},

  number       = 2,

  volume       = 9,

  place        = {United States},

  year         = {2020},

  month        = {1}

}

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Works referenced in this record:

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Sunny, Jithin S.; Nisha, Khairun; Natarajan, Anuradha
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Draft Genome Sequence of Comamonas aquatilis Strain LK (= CSUR P6418 = CECT 9772), Isolated from the Planarian Schmidtea mediterranea
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Kangale, Luis Johnson; Levasseur, Anthony; Raoult, Didier
Microbiology Resource Announcements, Vol. 10, Issue 5
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Title: Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes

Abstract

Citation Formats

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