Draft Genome Sequences of Strains TAV3 and TAV4 ( Verrucomicrobia: Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes
Abstract
Here, we report the high-quality draft genome sequences of Opitutaceae sp. strains TAV3 and TAV4, which were isolated from the hindgut of the wood-feeding termite Reticulitermes flavipes. Using a combination of Illumina and PacBio sequencing, we constructed nearly complete assemblies totaling 5.84 and 5.91 Mbp in length for strains TAV3 and TAV4, respectively. In addition, we report an in silico analysis of potential lignocellulose-digesting enzymes present in these strains.
- Authors:
-
[2];
[4];
- Univ. of Texas, Arlington, TX (United States)
- Univ. of California, Davis, CA (United States)
- King Mongkut’s Univ. of Technology, Bangkok (Thailand)
- Univ. of California, Davis, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Univ. of Arizona, Tucson, AZ (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC); National Institutes of Health (NIH)
- OSTI Identifier:
- 1599847
- Grant/Contract Number:
- [AC02-05CH11231; 1S10OD010786-01]
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Microbiology Resource Announcements
- Additional Journal Information:
- [ Journal Volume: 9; Journal Issue: 2]; Journal ID: ISSN 2576-098X
- Publisher:
- SSPA - American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Kotak, Malini, Lin, Jonathan Y., Isanapong, Jantiya, Rodrigues, Jorge L. M., and Baltrus, David A. Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes. United States: N. p., 2020.
Web. doi:10.1128/MRA.01192-19.
Kotak, Malini, Lin, Jonathan Y., Isanapong, Jantiya, Rodrigues, Jorge L. M., & Baltrus, David A. Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes. United States. doi:10.1128/MRA.01192-19.
Kotak, Malini, Lin, Jonathan Y., Isanapong, Jantiya, Rodrigues, Jorge L. M., and Baltrus, David A. Thu .
"Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes". United States. doi:10.1128/MRA.01192-19. https://www.osti.gov/servlets/purl/1599847.
@article{osti_1599847,
title = {Draft Genome Sequences of Strains TAV3 and TAV4 (Verrucomicrobia:Opitutaceae), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes},
author = {Kotak, Malini and Lin, Jonathan Y. and Isanapong, Jantiya and Rodrigues, Jorge L. M. and Baltrus, David A.},
abstractNote = {Here, we report the high-quality draft genome sequences of Opitutaceae sp. strains TAV3 and TAV4, which were isolated from the hindgut of the wood-feeding termite Reticulitermes flavipes. Using a combination of Illumina and PacBio sequencing, we constructed nearly complete assemblies totaling 5.84 and 5.91 Mbp in length for strains TAV3 and TAV4, respectively. In addition, we report an in silico analysis of potential lignocellulose-digesting enzymes present in these strains.},
doi = {10.1128/MRA.01192-19},
journal = {Microbiology Resource Announcements},
number = [2],
volume = [9],
place = {United States},
year = {2020},
month = {1}
}
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