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Title: Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea

Abstract

Sphaerosporella brunneais a pioneer ectomycorrhizal fungus with facultative saprophytic capacities. Here, we sequenced the genome ofS. brunneastrain Sb_GMNB300, which is estimated at 51.6 Mb in size with 872 assembled contigs accounting for 12,597 predicted coding genes. This genome will be useful for comparative studies of Pezizales ectomycorrhizal symbioses.

Authors:
ORCiD logo [1];  [2];  [2];  [3];  [4];  [5];  [5];  [6];  [2];  [2];  [2];  [2];  [3];  [7];  [7];  [3];  [3];  [8]; ORCiD logo [1];  [9]
  1. Michigan State Univ., East Lansing, MI (United States); Great Lakes Bioenergy Research Center (GLBRC), East Lansing, MI (United States)
  2. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  3. Univ. of Perugia (Italy)
  4. Austrian Inst. of Technology (AIT), Tulln (Austria)
  5. Centro de Investigación y Tecnología Agroalimentaria de Aragón (CITA), Zaragoza (Spain)
  6. Michigan State Univ., East Lansing, MI (United States)
  7. Univ. de Lorraine, Champenoux (France)
  8. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Berkeley, CA (United States)
  9. Vanderbilt Univ., Nashville, TN (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); Spanish National Institute of Agricultural Research
OSTI Identifier:
1599825
Alternate Identifier(s):
OSTI ID: 1600742
Grant/Contract Number:  
[AC02-05CH11231; SC0018409]
Resource Type:
Accepted Manuscript
Journal Name:
Microbiology Resource Announcements
Additional Journal Information:
[ Journal Volume: 8; Journal Issue: 50]; Journal ID: ISSN 2576-098X
Publisher:
SSPA - American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; ascomycota; pezizales; Dichobotrys; Sphaerosporella; Tuber; ectomycorrhiza; PacBio

Citation Formats

Benucci, Gian Maria Niccolò, Haridas, Sajeet, Labutti, Kurt, Marozzi, Giorgio, Antonielli, Livio, Sanchez, Sergio, Marco, Pedro, Wang, Xinxin, Barry, Kerrie, Lipzen, Anna, Chovatia, Mansi, Hundley, Hope, Baciarelli Falini, Leonardo, Murat, Claude, Martin, Francis, Albertini, Emidio, Donnini, Domizia, Grigoriev, Igor V., Bonito, Gregory, and Rokas, Antonis. Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea. United States: N. p., 2019. Web. doi:10.1128/MRA.00857-19.
Benucci, Gian Maria Niccolò, Haridas, Sajeet, Labutti, Kurt, Marozzi, Giorgio, Antonielli, Livio, Sanchez, Sergio, Marco, Pedro, Wang, Xinxin, Barry, Kerrie, Lipzen, Anna, Chovatia, Mansi, Hundley, Hope, Baciarelli Falini, Leonardo, Murat, Claude, Martin, Francis, Albertini, Emidio, Donnini, Domizia, Grigoriev, Igor V., Bonito, Gregory, & Rokas, Antonis. Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea. United States. doi:10.1128/MRA.00857-19.
Benucci, Gian Maria Niccolò, Haridas, Sajeet, Labutti, Kurt, Marozzi, Giorgio, Antonielli, Livio, Sanchez, Sergio, Marco, Pedro, Wang, Xinxin, Barry, Kerrie, Lipzen, Anna, Chovatia, Mansi, Hundley, Hope, Baciarelli Falini, Leonardo, Murat, Claude, Martin, Francis, Albertini, Emidio, Donnini, Domizia, Grigoriev, Igor V., Bonito, Gregory, and Rokas, Antonis. Thu . "Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea". United States. doi:10.1128/MRA.00857-19. https://www.osti.gov/servlets/purl/1599825.
@article{osti_1599825,
title = {Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea},
author = {Benucci, Gian Maria Niccolò and Haridas, Sajeet and Labutti, Kurt and Marozzi, Giorgio and Antonielli, Livio and Sanchez, Sergio and Marco, Pedro and Wang, Xinxin and Barry, Kerrie and Lipzen, Anna and Chovatia, Mansi and Hundley, Hope and Baciarelli Falini, Leonardo and Murat, Claude and Martin, Francis and Albertini, Emidio and Donnini, Domizia and Grigoriev, Igor V. and Bonito, Gregory and Rokas, Antonis},
abstractNote = {Sphaerosporella brunneais a pioneer ectomycorrhizal fungus with facultative saprophytic capacities. Here, we sequenced the genome ofS. brunneastrain Sb_GMNB300, which is estimated at 51.6 Mb in size with 872 assembled contigs accounting for 12,597 predicted coding genes. This genome will be useful for comparative studies of Pezizales ectomycorrhizal symbioses.},
doi = {10.1128/MRA.00857-19},
journal = {Microbiology Resource Announcements},
number = [50],
volume = [8],
place = {United States},
year = {2019},
month = {12}
}

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Works referenced in this record:

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
journal, March 2010

  • Martin, Francis; Kohler, Annegret; Murat, Claude
  • Nature, Vol. 464, Issue 7291
  • DOI: 10.1038/nature08867

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
journal, November 2018


An efficient algorithm for large-scale detection of protein families
journal, April 2002


Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
journal, February 2015

  • Kohler, Annegret; Kuo, Alan; Nagy, Laszlo G.
  • Nature Genetics, Vol. 47, Issue 4
  • DOI: 10.1038/ng.3223

Full-length transcriptome assembly from RNA-Seq data without a reference genome
journal, May 2011

  • Grabherr, Manfred G.; Haas, Brian J.; Yassour, Moran
  • Nature Biotechnology, Vol. 29, Issue 7
  • DOI: 10.1038/nbt.1883

Phased diploid genome assembly with single-molecule real-time sequencing
journal, October 2016

  • Chin, Chen-Shan; Peluso, Paul; Sedlazeck, Fritz J.
  • Nature Methods, Vol. 13, Issue 12
  • DOI: 10.1038/nmeth.4035

MycoCosm portal: gearing up for 1000 fungal genomes
journal, December 2013

  • Grigoriev, Igor V.; Nikitin, Roman; Haridas, Sajeet
  • Nucleic Acids Research, Vol. 42, Issue D1
  • DOI: 10.1093/nar/gkt1183

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
journal, March 2007


The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution
journal, September 2013


FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
journal, June 2015