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Title: Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins

Abstract

Dinoflagelates and cyanobacteria produce saxitoxin (STX), a lethal bis-guanidinium neurotoxin causing paralytic shellfish poisoning. A number of metazoans have soluble STX-binding proteins that may prevent STX intoxication. However, their STX molecular recognition mechanisms remain unknown. Here, we present structures of saxiphilin (Sxph), a bullfrog high-affinity STX-binding protein, alone and bound to STX. The structures reveal a novel high-affinity STX-binding site built from a “proto-pocket” on a transferrin scaffold that also bears thyroglobulin domain protease inhibitor repeats. Comparison of Sxph and voltage-gated sodium channel STX-binding sites reveals a convergent toxin recognition strategy comprising a largely rigid binding site where acidic side chains and a cation-π interaction engage STX. These studies reveal molecular rules for STX recognition, outline how a toxin-binding site can be built on a naïve scaffold, and open a path to developing protein sensors for environmental STX monitoring and new biologics for STX intoxication mitigation.

Authors:
ORCiD logo [1]; ORCiD logo [1];  [2]; ORCiD logo [1]; ORCiD logo [3]
  1. Univ. of California, San Francisco, CA (United States)
  2. Univ. of California, San Francisco, CA (United States); Gilead Sciences, Foster City, CA (United States)
  3. Univ. of California, San Francisco, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC); National Institutes of Health (NIH); National Science Foundation (NSF)
OSTI Identifier:
1599801
Grant/Contract Number:  
AC02-05CH11231; NIH-NHLBI R01-H6080050; NIH-NIGMS GM117263-01A1
Resource Type:
Accepted Manuscript
Journal Name:
Science Advances
Additional Journal Information:
Journal Volume: 5; Journal Issue: 6; Journal ID: ISSN 2375-2548
Publisher:
AAAS
Country of Publication:
United States
Language:
English
Subject:
60 APPLIED LIFE SCIENCES

Citation Formats

Yen, Tien-Jui, Lolicato, Marco, Thomas-Tran, Rhiannon, Du Bois, J., and Minor, Daniel L. Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins. United States: N. p., 2019. Web. doi:10.1126/sciadv.aax2650.
Yen, Tien-Jui, Lolicato, Marco, Thomas-Tran, Rhiannon, Du Bois, J., & Minor, Daniel L. Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins. United States. https://doi.org/10.1126/sciadv.aax2650
Yen, Tien-Jui, Lolicato, Marco, Thomas-Tran, Rhiannon, Du Bois, J., and Minor, Daniel L. Wed . "Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins". United States. https://doi.org/10.1126/sciadv.aax2650. https://www.osti.gov/servlets/purl/1599801.
@article{osti_1599801,
title = {Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins},
author = {Yen, Tien-Jui and Lolicato, Marco and Thomas-Tran, Rhiannon and Du Bois, J. and Minor, Daniel L.},
abstractNote = {Dinoflagelates and cyanobacteria produce saxitoxin (STX), a lethal bis-guanidinium neurotoxin causing paralytic shellfish poisoning. A number of metazoans have soluble STX-binding proteins that may prevent STX intoxication. However, their STX molecular recognition mechanisms remain unknown. Here, we present structures of saxiphilin (Sxph), a bullfrog high-affinity STX-binding protein, alone and bound to STX. The structures reveal a novel high-affinity STX-binding site built from a “proto-pocket” on a transferrin scaffold that also bears thyroglobulin domain protease inhibitor repeats. Comparison of Sxph and voltage-gated sodium channel STX-binding sites reveals a convergent toxin recognition strategy comprising a largely rigid binding site where acidic side chains and a cation-π interaction engage STX. These studies reveal molecular rules for STX recognition, outline how a toxin-binding site can be built on a naïve scaffold, and open a path to developing protein sensors for environmental STX monitoring and new biologics for STX intoxication mitigation.},
doi = {10.1126/sciadv.aax2650},
journal = {Science Advances},
number = 6,
volume = 5,
place = {United States},
year = {Wed Jun 19 00:00:00 EDT 2019},
month = {Wed Jun 19 00:00:00 EDT 2019}
}

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Structure of  -galactosidase at 3.2-A resolution obtained by cryo-electron microscopy
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Mutant cycle analysis with modified saxitoxins reveals specific interactions critical to attaining high-affinity inhibition of hNa V 1.7
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Molecular cloning of bullfrog saxiphilin: a unique relative of the transferrin family that binds saxitoxin.
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Receptor binding assay for the detection of paralytic shellfish poisoning toxins: comparison to the mouse bioassay and applicability under regulatory use
journal, September 2017

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  • Food Additives & Contaminants: Part A, Vol. 35, Issue 1
  • DOI: 10.1080/19440049.2017.1369584

Crystal structure of MHC class II-associated p41 Ii fragment bound to cathepsin L reveals the structural basis for differentiation between cathepsins L and S
journal, February 1999

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Diversity and Evolution of the Thyroglobulin Type-1 Domain Superfamily
journal, December 2005

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  • DOI: 10.1093/molbev/msj082

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Crystal structures of two mutants (K206Q, H207E) of the N-lobe of human transferrin with increased affinity for iron
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Primary structure of human thyroglobulin deduced from the sequence of its 8448-base complementary DNA
journal, June 1987


Characterization of the Type-1 Repeat from Thyroglobulin, a Cysteine-Rich Module Found in Proteins from Different Families
journal, August 1996


A Mutant of TTX-Resistant Cardiac Sodium Channels with TTX-Sensitive Properties
journal, May 1992


Saxitoxin binding sites in frog-myocardial cytosol
journal, February 1982


Interacting amino acid replacements allow poison frogs to evolve epibatidine resistance
journal, September 2017

  • Tarvin, Rebecca D.; Borghese, Cecilia M.; Sachs, Wiebke
  • Science, Vol. 357, Issue 6357
  • DOI: 10.1126/science.aan5061

Structural basis for the modulation of voltage-gated sodium channels by animal toxins
journal, July 2018


PHENIX: a comprehensive Python-based system for macromolecular structure solution.
text, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Apollo - University of Cambridge Repository
  • DOI: 10.17863/cam.45787

Model morphing and sequence assignment after molecular replacement.
text, January 2013

  • Terwilliger, Thomas C.; Read, Randy; Adams, Paul D.
  • Apollo - University of Cambridge Repository
  • DOI: 10.17863/cam.52314