Enterococcus faecalis α1–2‐mannosidase (EfMan‐I): an efficient catalyst for glycoprotein N‐glycan modification

doi:10.1002/1873-3468.13618

Title: Enterococcus faecalis α1–2‐mannosidase (EfMan‐I): an efficient catalyst for glycoprotein N‐glycan modification

Authors:

Li, Yanhong ^[1]; Li, Riyao ^[1]; Yu, Hai ^[1]; Sheng, Xue ^[1]; Wang, Jing ^[2]; Fisher, Andrew J. ^[3];

^[1]

Department of Chemistry University of California Davis CA USA
Department of Chemistry University of California Davis CA USA, Key Laboratory of Experimental Marine Biology Institute of Oceanology Chinese Academy of Sciences Qingdao China
Department of Chemistry University of California Davis CA USA, Department of Molecular and Cellular Biology University of California Davis CA USA

Publication Date:: 2019-10-08

Sponsoring Org.:: USDOE

OSTI Identifier:: 1598708

Resource Type:: Publisher's Accepted Manuscript

Journal Name:: FEBS Letters

Additional Journal Information:: Journal Name: FEBS Letters Journal Volume: 594 Journal Issue: 3; Journal ID: ISSN 0014-5793

Publisher:: Wiley Blackwell (John Wiley & Sons)

Country of Publication:: Netherlands

Language:: English

Citation Formats


                    Li, Yanhong, Li, Riyao, Yu, Hai, Sheng, Xue, Wang, Jing, Fisher, Andrew J., and Chen, Xi. Enterococcus faecalis α1–2‐mannosidase (EfMan‐I): an efficient catalyst for glycoprotein N‐glycan modification.  Netherlands: N. p., 2019. 
        Web.  doi:10.1002/1873-3468.13618.

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                    Li, Yanhong, Li, Riyao, Yu, Hai, Sheng, Xue, Wang, Jing, Fisher, Andrew J., & Chen, Xi. Enterococcus faecalis α1–2‐mannosidase (EfMan‐I): an efficient catalyst for glycoprotein N‐glycan modification.  Netherlands.  doi:10.1002/1873-3468.13618.

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                    Li, Yanhong, Li, Riyao, Yu, Hai, Sheng, Xue, Wang, Jing, Fisher, Andrew J., and Chen, Xi. Tue .  
        "Enterococcus faecalis α1–2‐mannosidase (EfMan‐I): an efficient catalyst for glycoprotein N‐glycan modification".  Netherlands.  doi:10.1002/1873-3468.13618.

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@article{osti_1598708,

  title        = {Enterococcus faecalis α1–2‐mannosidase (EfMan‐I): an efficient catalyst for glycoprotein N‐glycan modification},

  author       = {Li, Yanhong and Li, Riyao and Yu, Hai and Sheng, Xue and Wang, Jing and Fisher, Andrew J. and Chen, Xi},

  abstractNote = {},

  doi          = {10.1002/1873-3468.13618},

  journal      = {FEBS Letters},

  number       = 3,

  volume       = 594,

  place        = {Netherlands},

  year         = {2019},

  month        = {10}

}

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DOI: 10.1002/1873-3468.13618

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Title: Enterococcus faecalis α1–2‐mannosidase (EfMan‐I): an efficient catalyst for glycoprotein N‐glycan modification

Citation Formats

The crystal structure of the endoglucanase Cel10, a family 8 glycosyl hydrolase from Klebsiella pneumoniae journal, November 2016

A “Tag-and-Modify” Approach to Site-Selective Protein Modification journal, September 2011

Glycosylation of Therapeutic Proteins: An Effective Strategy to Optimize Efficacy journal, January 2010

Bacteroides thetaiotaomicron generates diverse α-mannosidase activities through subtle evolution of a distal substrate-binding motif journal, April 2018

Overview of the CCP 4 suite and current developments journal, March 2011

Enzymatic Glycoprotein Synthesis: Preparation of Ribonuclease Glycoforms via Enzymatic Glycopeptide Condensation and Glycosylation journal, March 1997

The Structure of Bovine Lysosomal α-Mannosidase Suggests a Novel Mechanism for Low-pH Activation journal, March 2003

Core fucose and bisecting GlcNAc, the direct modifiers of the N-glycan core: their functions and target proteins journal, August 2009

Substrate recognition and catalysis by GH47 α-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway journal, November 2016

Insights into the Mechanism of Drosophila melanogaster Golgi α-Mannosidase II through the Structural Analysis of Covalent Reaction Intermediates journal, September 2003

A 1,2-α-d-mannosidase from a bacillus sp.: purification, characterization, and mode of action journal, January 1994

Chemical Synthesis of a Glycoprotein Having an Intact Human Complex-Type Sialyloligosaccharide under the Boc and Fmoc Synthetic Strategies journal, January 2008

Updating the sequence-based classification of glycosyl hydrolases journal, June 1996

Model systems for the study of Enterococcal colonization and infection journal, May 2017

Analysis of protein glycosylation by mass spectrometry journal, June 2007

Plant protein glycosylation journal, February 2016

Integration, scaling, space-group assignment and post-refinement journal, January 2010

XDS journal, January 2010

Humanization of Yeast to Produce Complex Terminally Sialylated Glycoproteins journal, September 2006

An endo-β-N-acetylglucosaminidase from Enterococcus faecalisV583 responsible for the hydrolysis of high-mannose and hybrid-type N-linked glycans journal, October 2011

Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence journal, January 2017

Engineering complex-type N-glycosylation in Pichia pastoris using GlycoSwitch technology journal, December 2008

Pharmacological significance of glycosylation in therapeutic proteins journal, December 2009

Posttranslational Modifications and the Immunogenicity of Biotherapeutics journal, January 2016

Post-translational modifications in the context of therapeutic proteins journal, October 2006

Production of an Endo-β-N-Acetylglucosaminidase Activity Mediates Growth ofEnterococcus faecalis on a High-Mannose-Type Glycoprotein journal, January 2000

Atomic (0.94 Å) resolution structure of an inverting glycosidase in complex with substrate journal, March 2002

Optimization of humanized IgGs in glycoengineered Pichia pastoris journal, January 2006

Systematic capsule gene disruption reveals the central role of galactose metabolism on Cryptococcus neoformans virulence journal, May 2007

Coot model-building tools for molecular graphics journal, November 2004

Influence of Substrate Conformation on the Deglycosylation of Ribonuclease B by Recombinant Yeast Peptide: N-glycanase journal, January 2007

Features and development of Coot journal, March 2010

REFMAC 5 for the refinement of macromolecular crystal structures journal, March 2011

CheckMyMetal : a macromolecular metal-binding validation tool journal, February 2017

Solvent content of protein crystals journal, April 1968

Chemical and Chemoenzymatic Synthesis of Glycoproteins for Deciphering Functions journal, January 2014

Crystal Structure and Evolution of a Prokaryotic Glucoamylase journal, March 2003

Glycoprotein Synthesis: An Update journal, January 2009

Mechanistic insights into a Ca2+-dependent family of α-mannosidases in a human gut symbiont journal, December 2009

How glycan metabolism shapes the human gut microbiota journal, April 2012

A classification of glycosyl hydrolases based on amino acid sequence similarities journal, December 1991

Structural Insights into the Substrate Specificity and Function of Escherichia coli K12 YgjK, a Glucosidase Belonging to the Glycoside Hydrolase Family 63 journal, August 2008

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities journal, August 1993

Sequential processing of mannose-containing glycans by two α-mannosidases from Solitalea canadensis journal, February 2016

Recombinant Coagulation Factor IX journal, February 1998

A Novel Secreted Endoglycosidase from Enterococcus faecalis with Activity on Human Immunoglobulin G and Ribonuclease B journal, March 2004

Chitobiose Phosphorylase from Vibrio proteolyticus, a Member of Glycosyl Transferase Family 36, Has a Clan GH-L-like (α/α)6 Barrel Fold journal, June 2004

A bacterial glycosidase enables mannose-6-phosphate modification and improved cellular uptake of yeast-produced recombinant human lysosomal enzymes journal, November 2012

Phaser crystallographic software journal, July 2007

In vitro susceptibility studies of vancomycin-resistant Enterococcus faecalis. journal, September 1989

Emerging Technologies for Making Glycan-Defined Glycoproteins journal, December 2011

The crystal structure of the endoglucanase Cel10, a family 8 glycosyl hydrolase from Klebsiella pneumoniae
journal, November 2016

A “Tag-and-Modify” Approach to Site-Selective Protein Modification
journal, September 2011

Glycosylation of Therapeutic Proteins: An Effective Strategy to Optimize Efficacy
journal, January 2010

Bacteroides thetaiotaomicron generates diverse α-mannosidase activities through subtle evolution of a distal substrate-binding motif
journal, April 2018

Overview of the CCP 4 suite and current developments
journal, March 2011

Enzymatic Glycoprotein Synthesis: Preparation of Ribonuclease Glycoforms via Enzymatic Glycopeptide Condensation and Glycosylation
journal, March 1997

The Structure of Bovine Lysosomal α-Mannosidase Suggests a Novel Mechanism for Low-pH Activation
journal, March 2003

Core fucose and bisecting GlcNAc, the direct modifiers of the N-glycan core: their functions and target proteins
journal, August 2009

Substrate recognition and catalysis by GH47 α-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway
journal, November 2016

Insights into the Mechanism of Drosophila melanogaster Golgi α-Mannosidase II through the Structural Analysis of Covalent Reaction Intermediates
journal, September 2003

A 1,2-α-d-mannosidase from a bacillus sp.: purification, characterization, and mode of action
journal, January 1994

Chemical Synthesis of a Glycoprotein Having an Intact Human Complex-Type Sialyloligosaccharide under the Boc and Fmoc Synthetic Strategies
journal, January 2008

Updating the sequence-based classification of glycosyl hydrolases
journal, June 1996

Model systems for the study of Enterococcal colonization and infection
journal, May 2017

Analysis of protein glycosylation by mass spectrometry
journal, June 2007

Plant protein glycosylation
journal, February 2016

Integration, scaling, space-group assignment and post-refinement
journal, January 2010

XDS
journal, January 2010

Humanization of Yeast to Produce Complex Terminally Sialylated Glycoproteins
journal, September 2006

An endo-β-N-acetylglucosaminidase from Enterococcus faecalisV583 responsible for the hydrolysis of high-mannose and hybrid-type N-linked glycans
journal, October 2011

Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence
journal, January 2017

Engineering complex-type N-glycosylation in Pichia pastoris using GlycoSwitch technology
journal, December 2008

Pharmacological significance of glycosylation in therapeutic proteins
journal, December 2009

Posttranslational Modifications and the Immunogenicity of Biotherapeutics
journal, January 2016

Post-translational modifications in the context of therapeutic proteins
journal, October 2006

Production of an Endo-β-N-Acetylglucosaminidase Activity Mediates Growth ofEnterococcus faecalis on a High-Mannose-Type Glycoprotein
journal, January 2000

Atomic (0.94 Å) resolution structure of an inverting glycosidase in complex with substrate
journal, March 2002

Optimization of humanized IgGs in glycoengineered Pichia pastoris
journal, January 2006

Systematic capsule gene disruption reveals the central role of galactose metabolism on Cryptococcus neoformans virulence
journal, May 2007

Coot model-building tools for molecular graphics
journal, November 2004

Influence of Substrate Conformation on the Deglycosylation of Ribonuclease B by Recombinant Yeast Peptide: N-glycanase
journal, January 2007

Features and development of Coot
journal, March 2010

REFMAC 5 for the refinement of macromolecular crystal structures
journal, March 2011

CheckMyMetal : a macromolecular metal-binding validation tool
journal, February 2017

Solvent content of protein crystals
journal, April 1968

Chemical and Chemoenzymatic Synthesis of Glycoproteins for Deciphering Functions
journal, January 2014

Crystal Structure and Evolution of a Prokaryotic Glucoamylase
journal, March 2003

Glycoprotein Synthesis: An Update
journal, January 2009

Mechanistic insights into a Ca2+-dependent family of α-mannosidases in a human gut symbiont
journal, December 2009

How glycan metabolism shapes the human gut microbiota
journal, April 2012

A classification of glycosyl hydrolases based on amino acid sequence similarities
journal, December 1991

Structural Insights into the Substrate Specificity and Function of Escherichia coli K12 YgjK, a Glucosidase Belonging to the Glycoside Hydrolase Family 63
journal, August 2008

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities
journal, August 1993

Sequential processing of mannose-containing glycans by two α-mannosidases from Solitalea canadensis
journal, February 2016

Recombinant Coagulation Factor IX
journal, February 1998

A Novel Secreted Endoglycosidase from Enterococcus faecalis with Activity on Human Immunoglobulin G and Ribonuclease B
journal, March 2004

Chitobiose Phosphorylase from Vibrio proteolyticus, a Member of Glycosyl Transferase Family 36, Has a Clan GH-L-like (α/α)6 Barrel Fold
journal, June 2004

A bacterial glycosidase enables mannose-6-phosphate modification and improved cellular uptake of yeast-produced recombinant human lysosomal enzymes
journal, November 2012

Phaser crystallographic software
journal, July 2007

In vitro susceptibility studies of vancomycin-resistant Enterococcus faecalis.
journal, September 1989

Emerging Technologies for Making Glycan-Defined Glycoproteins
journal, December 2011