Editorial: Microbial Hydrogen Metabolism
Abstract
Among the most ancient and widespread metabolic traits of microbial life is the ability to interconvert molecular hydrogen H2. Two classes of metalloenzymes, [FeFe]-hydrogenase and [NiFe]-hydrogenase, catalyze the reversible oxidation of H2 to electrons and protons; a third class of hydrogenase, termed [Fe]-hydrogenase or Hmd, catalyzes the reduction of the substrate methenyltetrahydromethanopterin with H2. The three classes of enzyme differ structurally and are phylogenetically unrelated.
- Authors:
- Publication Date:
- Research Org.:
- Montana State Univ., Bozeman, MT (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1596152
- Alternate Identifier(s):
- OSTI ID: 1595992
- Grant/Contract Number:
- SC0020246; 170100310; APP1178715
- Resource Type:
- Published Article
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Name: Frontiers in Microbiology Journal Volume: 11; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- Switzerland
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; hydrogen; hydrogen metabolism; hydrogenase; fermentation; respiration
Citation Formats
Greening, Chris, and Boyd, Eric. Editorial: Microbial Hydrogen Metabolism. Switzerland: N. p., 2020.
Web. doi:10.3389/fmicb.2020.00056.
Greening, Chris, & Boyd, Eric. Editorial: Microbial Hydrogen Metabolism. Switzerland. https://doi.org/10.3389/fmicb.2020.00056
Greening, Chris, and Boyd, Eric. Thu .
"Editorial: Microbial Hydrogen Metabolism". Switzerland. https://doi.org/10.3389/fmicb.2020.00056.
@article{osti_1596152,
title = {Editorial: Microbial Hydrogen Metabolism},
author = {Greening, Chris and Boyd, Eric},
abstractNote = {Among the most ancient and widespread metabolic traits of microbial life is the ability to interconvert molecular hydrogen H2. Two classes of metalloenzymes, [FeFe]-hydrogenase and [NiFe]-hydrogenase, catalyze the reversible oxidation of H2 to electrons and protons; a third class of hydrogenase, termed [Fe]-hydrogenase or Hmd, catalyzes the reduction of the substrate methenyltetrahydromethanopterin with H2. The three classes of enzyme differ structurally and are phylogenetically unrelated.},
doi = {10.3389/fmicb.2020.00056},
journal = {Frontiers in Microbiology},
number = ,
volume = 11,
place = {Switzerland},
year = {2020},
month = {1}
}
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Works referenced in this record:
Mixotrophy drives niche expansion of verrucomicrobial methanotrophs
journal, August 2017
- Carere, Carlo R.; Hards, Kiel; Houghton, Karen M.
- The ISME Journal, Vol. 11, Issue 11
Flavin-Based Electron Bifurcation, A New Mechanism of Biological Energy Coupling
journal, February 2018
- Buckel, Wolfgang; Thauer, Rudolf K.
- Chemical Reviews, Vol. 118, Issue 7
Anaerobic Formate and Hydrogen Metabolism
journal, January 2016
- Pinske, Constanze; Sawers, R. Gary
- EcoSal Plus, Vol. 7, Issue 1
Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria
journal, November 2014
- Schuchmann, Kai; Müller, Volker
- Nature Reviews Microbiology, Vol. 12, Issue 12
Microbial hydrogenases: Primary structure, classification, signatures and phylogeny
journal, April 1993
- Wu, L. -F.; Mandrand, M. A.
- FEMS Microbiology Letters, Vol. 104, Issue 3-4
Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation
journal, August 2014
- Koch, H.; Galushko, A.; Albertsen, M.
- Science, Vol. 345, Issue 6200
Bacterial formate hydrogenlyase complex
journal, August 2014
- McDowall, J. S.; Murphy, B. J.; Haumann, M.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 38
A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases
journal, March 2014
- Greening, C.; Berney, M.; Hards, K.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 11
[FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation
journal, June 2015
- Peters, John W.; Schut, Gerrit J.; Boyd, Eric S.
- Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1853, Issue 6
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
journal, September 2015
- Greening, Chris; Biswas, Ambarish; Carere, Carlo R.
- The ISME Journal, Vol. 10, Issue 3
Identification of a multi-protein reductive dehalogenase complex in D ehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement : Respiratory reductive dehalogenase protein complex
journal, February 2016
- Kublik, Anja; Deobald, Darja; Hartwig, Stefanie
- Environmental Microbiology, Vol. 18, Issue 9
Probing the geological source and biological fate of hydrogen in Yellowstone hot springs
journal, July 2019
- Lindsay, Melody R.; Colman, Daniel R.; Amenabar, Maximiliano J.
- Environmental Microbiology, Vol. 21, Issue 10
Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO).
journal, January 1996
- Conrad, R.
- Microbiological reviews, Vol. 60, Issue 4
Function of Periplasmic Hydrogenases in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough
journal, June 2007
- Caffrey, S. M.; Park, H. -S.; Voordouw, J. K.
- Journal of Bacteriology, Vol. 189, Issue 17
Molecular Hydrogen as an Energy Source for Helicobacter pylori
journal, November 2002
- Olson, J. W.
- Science, Vol. 298, Issue 5599
Microbiota-Derived Hydrogen Fuels Salmonella Typhimurium Invasion of the Gut Ecosystem
journal, December 2013
- Maier, Lisa; Vyas, Rounak; Cordova, Carmen Dolores
- Cell Host & Microbe, Vol. 14, Issue 6
Hydrogen Metabolism and the Evolution of Biological Respiration: Two separate families of enzymes that oxidize hydrogen and also produce it arose through convergent evolution
journal, September 2014
- Schut, Gerrit J.; Peters, John W.; Boyd, Eric S.
- Microbe Magazine, Vol. 9, Issue 9
Two uptake hydrogenases differentially interact with the aerobic respiratory chain during mycobacterial growth and persistence
journal, October 2019
- Cordero, Paul R. F.; Grinter, Rhys; Hards, Kiel
- Journal of Biological Chemistry, Vol. 294, Issue 50
Respiratory Hydrogen Use by Salmonella enterica Serovar Typhimurium Is Essential for Virulence
journal, October 2004
- Maier, R. J.; Olczak, A.; Maier, S.
- Infection and Immunity, Vol. 72, Issue 11
Diverse hydrogen production and consumption pathways influence methane production in ruminants
journal, June 2019
- Greening, Chris; Geier, Renae; Wang, Cecilia
- The ISME Journal, Vol. 13, Issue 10
The three classes of hydrogenases from sulfate-reducing bacteria of the genus Desulfovibrio
journal, December 1988
- Fauque, G.; Peck, H. D.; Moura, J. J. G.
- FEMS Microbiology Letters, Vol. 54, Issue 4
Stepwise [FeFe]-hydrogenase H-cluster assembly revealed in the structure of HydAΔEFG
journal, April 2010
- Mulder, David W.; Boyd, Eric S.; Sarma, Ranjana
- Nature, Vol. 465, Issue 7295
Hydrogenases in sulfate-reducing bacteria function as chromium reductase
journal, July 2003
- Chardin, B.; Giudici-Orticoni, M. -T.; De Luca, G.
- Applied Microbiology and Biotechnology, Vol. 63, Issue 3
Metagenomic Evidence for H2 Oxidation and H2 Production by Serpentinite-Hosted Subsurface Microbial Communities
journal, January 2012
- Brazelton, William J.; Nelson, Bridget; Schrenk, Matthew O.
- Frontiers in Microbiology, Vol. 2
The physiology and habitat of the last universal common ancestor
journal, July 2016
- Weiss, Madeline C.; Sousa, Filipa L.; Mrnjavac, Natalia
- Nature Microbiology, Vol. 1, Issue 9
The hydA gene encoding the H 2 -evolving hydrogenase of Clostridium perfringens : molecular characterization and expression of the gene
journal, December 1999
- Kaji, Masato; Taniguchi, Yuki; Matsushita, Osamu
- FEMS Microbiology Letters, Vol. 181, Issue 2
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
journal, October 2007
- Vignais, Paulette M.; Billoud, Bernard
- Chemical Reviews, Vol. 107, Issue 10, p. 4206-4272
Methylacidiphilum fumariolicum SolV, a thermoacidophilic ‘Knallgas’ methanotroph with both an oxygen-sensitive and -insensitive hydrogenase
journal, December 2016
- Mohammadi, Sepehr; Pol, Arjan; van Alen, Theo A.
- The ISME Journal, Vol. 11, Issue 4
Cyanobacterial hydrogenases: diversity, regulation and applications
journal, November 2007
- Tamagnini, Paula; Leitão, Elsa; Oliveira, Paulo
- FEMS Microbiology Reviews, Vol. 31, Issue 6
X-ray Crystal Structure of the Fe-Only Hydrogenase (CpI) from Clostridium pasteurianum to 1.8 Angstrom Resolution
journal, December 1998
- Peters, J. W.
- Science, Vol. 282, Issue 5395
H 2 metabolism is widespread and diverse among human colonic microbes
journal, March 2016
- Wolf, Patricia G.; Biswas, Ambarish; Morales, Sergio E.
- Gut Microbes, Vol. 7, Issue 3
A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases
journal, February 2013
- Marreiros, Bruno C.; Batista, Ana P.; Duarte, Afonso M. S.
- Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1827, Issue 2
Streptomycetes contributing to atmospheric molecular hydrogen soil uptake are widespread and encode a putative high-affinity [NiFe]-hydrogenase
journal, March 2010
- Constant, Philippe; Chowdhury, Soumitra Paul; Pratscher, Jennifer
- Environmental Microbiology, Vol. 12, Issue 3
Integration of hydrogenase expression and hydrogen sensing in bacterial cell physiology
journal, April 2014
- Greening, Chris; Cook, Gregory M.
- Current Opinion in Microbiology, Vol. 18
Electron acceptor availability alters carbon and energy metabolism in a thermoacidophile
journal, July 2018
- Amenabar, Maximiliano J.; Colman, Daniel R.; Poudel, Saroj
- Environmental Microbiology, Vol. 20, Issue 7
Identification of an uptake hydrogenase for hydrogen-dependent dissimilatory azoreduction by Shewanella decolorationis S12
journal, July 2008
- Hong, Yi-Guo; Guo, Jun; Sun, Guo-Ping
- Applied Microbiology and Biotechnology, Vol. 80, Issue 3
How did LUCA make a living? Chemiosmosis in the origin of life
journal, January 2010
- Lane, Nick; Allen, John F.; Martin, William
- BioEssays, Vol. 32, Issue 4
The Crystal Structure of [Fe]-Hydrogenase Reveals the Geometry of the Active Site
journal, July 2008
- Shima, S.; Pilak, O.; Vogt, S.
- Science, Vol. 321, Issue 5888
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments
journal, April 2019
- Dong, Xiyang; Greening, Chris; Rattray, Jayne E.
- Nature Communications, Vol. 10, Issue 1
A Bacterial Electron-bifurcating Hydrogenase
journal, July 2012
- Schuchmann, Kai; Müller, Volker
- Journal of Biological Chemistry, Vol. 287, Issue 37
Direct and Reversible Hydrogenation of CO2 to Formate by a Bacterial Carbon Dioxide Reductase
journal, December 2013
- Schuchmann, K.; Muller, V.
- Science, Vol. 342, Issue 6164
Crystal structure of the nickel–iron hydrogenase from Desulfovibrio gigas
journal, February 1995
- Volbeda, Anne; Charon, Marie-Hélène; Piras, Claudine
- Nature, Vol. 373, Issue 6515
The hydrogenases of Thiocapsa roseopersicina
journal, February 2005
- Kovács, K. L.; Kovács, Á. T.; Maróti, G.
- Biochemical Society Transactions, Vol. 33, Issue 1
Hydrogen is an energy source for hydrothermal vent symbioses
journal, August 2011
- Petersen, Jillian M.; Zielinski, Frank U.; Pape, Thomas
- Nature, Vol. 476, Issue 7359
Bacterial fermentation and respiration processes are uncoupled in anoxic permeable sediments
journal, March 2019
- Kessler, Adam J.; Chen, Ya-Jou; Waite, David W.
- Nature Microbiology, Vol. 4, Issue 6
Organohalide respiratory chains: composition, topology and key enzymes
journal, March 2018
- Schubert, Torsten; Adrian, Lorenz; Sawers, R. Gary
- FEMS Microbiology Ecology, Vol. 94, Issue 4
The Iron-Hydrogenase of Thermotoga maritima Utilizes Ferredoxin and NADH Synergistically: a New Perspective on Anaerobic Hydrogen Production
journal, May 2009
- Schut, G. J.; Adams, M. W. W.
- Journal of Bacteriology, Vol. 191, Issue 13
Iron Hydrogenases and the Evolution of Anaerobic Eukaryotes
journal, November 2000
- Horner, David S.; Foster, Peter G.; Embley, T. Martin
- Molecular Biology and Evolution, Vol. 17, Issue 11
Hydrogenases for biological hydrogen production
journal, September 2011
- Kim, Dong-Hoon; Kim, Mi-Sun
- Bioresource Technology, Vol. 102, Issue 18
A H 2 -oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 : H2-dependent 1,2,3-trichlorobenzene reduction
journal, July 2017
- Hartwig, Stefanie; Dragomirova, Nadya; Kublik, Anja
- Environmental Microbiology Reports, Vol. 9, Issue 5
Volatile Fatty Acids and Hydrogen as Substrates for Sulfate-Reducing Bacteria in Anaerobic Marine Sediment
journal, January 1981
- Sørensen, Jan; Christensen, Dorte; Jørgensen, Bo Barker
- Applied and Environmental Microbiology, Vol. 42, Issue 1
Hydrogenases from Methanogenic Archaea, Nickel, a Novel Cofactor, and H 2 Storage
journal, June 2010
- Thauer, Rudolf K.; Kaster, Anne-Kristin; Goenrich, Meike
- Annual Review of Biochemistry, Vol. 79, Issue 1
Atmospheric trace gases support primary production in Antarctic desert surface soil
journal, December 2017
- Ji, Mukan; Greening, Chris; Vanwonterghem, Inka
- Nature, Vol. 552, Issue 7685
Rock comminution as a source of hydrogen for subglacial ecosystems
journal, October 2015
- Telling, J.; Boyd, E. S.; Bone, N.
- Nature Geoscience, Vol. 8, Issue 11