Editorial: Microbial Hydrogen Metabolism
Abstract
Among the most ancient and widespread metabolic traits of microbial life is the ability to interconvert molecular hydrogen H 2. Two classes of metalloenzymes, [FeFe]-hydrogenase and [NiFe]-hydrogenase, catalyze the reversible oxidation of H 2 to electrons and protons; a third class of hydrogenase, termed [Fe]-hydrogenase or Hmd, catalyzes the reduction of the substrate methenyltetrahydromethanopterin with H 2. The three classes of enzyme differ structurally and are phylogenetically unrelated.
- Authors:
-
- Monash Univ., Clayton (Australia)
- Montana State Univ., Bozeman, MT (United States)
- Publication Date:
- Research Org.:
- Montana State Univ., Bozeman, MT (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
- OSTI Identifier:
- 1596152
- Alternate Identifier(s):
- OSTI ID: 1595992
- Grant/Contract Number:
- SC0020246; 170100310; APP1178715
- Resource Type:
- Published Article
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 11; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; hydrogen; hydrogen metabolism; hydrogenase; fermentation; respiration
Citation Formats
Greening, Chris, and Boyd, Eric. Editorial: Microbial Hydrogen Metabolism. United States: N. p., 2020.
Web. doi:10.3389/fmicb.2020.00056.
Greening, Chris, & Boyd, Eric. Editorial: Microbial Hydrogen Metabolism. United States. doi:10.3389/fmicb.2020.00056.
Greening, Chris, and Boyd, Eric. Thu .
"Editorial: Microbial Hydrogen Metabolism". United States. doi:10.3389/fmicb.2020.00056.
@article{osti_1596152,
title = {Editorial: Microbial Hydrogen Metabolism},
author = {Greening, Chris and Boyd, Eric},
abstractNote = {Among the most ancient and widespread metabolic traits of microbial life is the ability to interconvert molecular hydrogen H2. Two classes of metalloenzymes, [FeFe]-hydrogenase and [NiFe]-hydrogenase, catalyze the reversible oxidation of H2 to electrons and protons; a third class of hydrogenase, termed [Fe]-hydrogenase or Hmd, catalyzes the reduction of the substrate methenyltetrahydromethanopterin with H2. The three classes of enzyme differ structurally and are phylogenetically unrelated.},
doi = {10.3389/fmicb.2020.00056},
journal = {Frontiers in Microbiology},
number = ,
volume = 11,
place = {United States},
year = {2020},
month = {1}
}
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.3389/fmicb.2020.00056
DOI: 10.3389/fmicb.2020.00056
Other availability
Search WorldCat to find libraries that may hold this journal
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Mixotrophy drives niche expansion of verrucomicrobial methanotrophs
journal, August 2017
- Carere, Carlo R.; Hards, Kiel; Houghton, Karen M.
- The ISME Journal, Vol. 11, Issue 11
Flavin-Based Electron Bifurcation, A New Mechanism of Biological Energy Coupling
journal, February 2018
- Buckel, Wolfgang; Thauer, Rudolf K.
- Chemical Reviews, Vol. 118, Issue 7
Anaerobic Formate and Hydrogen Metabolism
journal, January 2016
- Pinske, Constanze; Sawers, R. Gary
- EcoSal Plus, Vol. 7, Issue 1
Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria
journal, November 2014
- Schuchmann, Kai; Müller, Volker
- Nature Reviews Microbiology, Vol. 12, Issue 12
Microbial hydrogenases: Primary structure, classification, signatures and phylogeny
journal, April 1993
- Wu, L. -F.; Mandrand, M. A.
- FEMS Microbiology Letters, Vol. 104, Issue 3-4
Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation
journal, August 2014
- Koch, H.; Galushko, A.; Albertsen, M.
- Science, Vol. 345, Issue 6200
Bacterial formate hydrogenlyase complex
journal, August 2014
- McDowall, J. S.; Murphy, B. J.; Haumann, M.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 38
A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases
journal, March 2014
- Greening, C.; Berney, M.; Hards, K.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 11
[FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation
journal, June 2015
- Peters, John W.; Schut, Gerrit J.; Boyd, Eric S.
- Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1853, Issue 6
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
journal, September 2015
- Greening, Chris; Biswas, Ambarish; Carere, Carlo R.
- The ISME Journal, Vol. 10, Issue 3
Identification of a multi-protein reductive dehalogenase complex in D ehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement : Respiratory reductive dehalogenase protein complex
journal, February 2016
- Kublik, Anja; Deobald, Darja; Hartwig, Stefanie
- Environmental Microbiology, Vol. 18, Issue 9
Probing the geological source and biological fate of hydrogen in Yellowstone hot springs
journal, July 2019
- Lindsay, Melody R.; Colman, Daniel R.; Amenabar, Maximiliano J.
- Environmental Microbiology, Vol. 21, Issue 10
Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO).
journal, January 1996
- Conrad, R.
- Microbiological reviews, Vol. 60, Issue 4
Function of Periplasmic Hydrogenases in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough
journal, June 2007
- Caffrey, S. M.; Park, H. -S.; Voordouw, J. K.
- Journal of Bacteriology, Vol. 189, Issue 17
Molecular Hydrogen as an Energy Source for Helicobacter pylori
journal, November 2002
- Olson, J. W.
- Science, Vol. 298, Issue 5599
Microbiota-Derived Hydrogen Fuels Salmonella Typhimurium Invasion of the Gut Ecosystem
journal, December 2013
- Maier, Lisa; Vyas, Rounak; Cordova, Carmen Dolores
- Cell Host & Microbe, Vol. 14, Issue 6
Hydrogen Metabolism and the Evolution of Biological Respiration: Two separate families of enzymes that oxidize hydrogen and also produce it arose through convergent evolution
journal, September 2014
- Schut, Gerrit J.; Peters, John W.; Boyd, Eric S.
- Microbe Magazine, Vol. 9, Issue 9
Two uptake hydrogenases differentially interact with the aerobic respiratory chain during mycobacterial growth and persistence
journal, October 2019
- Cordero, Paul R. F.; Grinter, Rhys; Hards, Kiel
- Journal of Biological Chemistry, Vol. 294, Issue 50
Respiratory Hydrogen Use by Salmonella enterica Serovar Typhimurium Is Essential for Virulence
journal, October 2004
- Maier, R. J.; Olczak, A.; Maier, S.
- Infection and Immunity, Vol. 72, Issue 11
Diverse hydrogen production and consumption pathways influence methane production in ruminants
journal, June 2019
- Greening, Chris; Geier, Renae; Wang, Cecilia
- The ISME Journal, Vol. 13, Issue 10
The three classes of hydrogenases from sulfate-reducing bacteria of the genus Desulfovibrio
journal, December 1988
- Fauque, G.; Peck, H. D.; Moura, J. J. G.
- FEMS Microbiology Letters, Vol. 54, Issue 4
Stepwise [FeFe]-hydrogenase H-cluster assembly revealed in the structure of HydAΔEFG
journal, April 2010
- Mulder, David W.; Boyd, Eric S.; Sarma, Ranjana
- Nature, Vol. 465, Issue 7295
Hydrogenases in sulfate-reducing bacteria function as chromium reductase
journal, July 2003
- Chardin, B.; Giudici-Orticoni, M. -T.; De Luca, G.
- Applied Microbiology and Biotechnology, Vol. 63, Issue 3
Metagenomic Evidence for H2 Oxidation and H2 Production by Serpentinite-Hosted Subsurface Microbial Communities
journal, January 2012
- Brazelton, William J.; Nelson, Bridget; Schrenk, Matthew O.
- Frontiers in Microbiology, Vol. 2
The physiology and habitat of the last universal common ancestor
journal, July 2016
- Weiss, Madeline C.; Sousa, Filipa L.; Mrnjavac, Natalia
- Nature Microbiology, Vol. 1, Issue 9
The hydA gene encoding the H 2 -evolving hydrogenase of Clostridium perfringens : molecular characterization and expression of the gene
journal, December 1999
- Kaji, Masato; Taniguchi, Yuki; Matsushita, Osamu
- FEMS Microbiology Letters, Vol. 181, Issue 2
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
journal, October 2007
- Vignais, Paulette M.; Billoud, Bernard
- Chemical Reviews, Vol. 107, Issue 10, p. 4206-4272
Methylacidiphilum fumariolicum SolV, a thermoacidophilic ‘Knallgas’ methanotroph with both an oxygen-sensitive and -insensitive hydrogenase
journal, December 2016
- Mohammadi, Sepehr; Pol, Arjan; van Alen, Theo A.
- The ISME Journal, Vol. 11, Issue 4
Cyanobacterial hydrogenases: diversity, regulation and applications
journal, November 2007
- Tamagnini, Paula; Leitão, Elsa; Oliveira, Paulo
- FEMS Microbiology Reviews, Vol. 31, Issue 6
X-ray Crystal Structure of the Fe-Only Hydrogenase (CpI) from Clostridium pasteurianum to 1.8 Angstrom Resolution
journal, December 1998
- Peters, J. W.
- Science, Vol. 282, Issue 5395
H 2 metabolism is widespread and diverse among human colonic microbes
journal, March 2016
- Wolf, Patricia G.; Biswas, Ambarish; Morales, Sergio E.
- Gut Microbes, Vol. 7, Issue 3
A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases
journal, February 2013
- Marreiros, Bruno C.; Batista, Ana P.; Duarte, Afonso M. S.
- Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1827, Issue 2
Streptomycetes contributing to atmospheric molecular hydrogen soil uptake are widespread and encode a putative high-affinity [NiFe]-hydrogenase
journal, March 2010
- Constant, Philippe; Chowdhury, Soumitra Paul; Pratscher, Jennifer
- Environmental Microbiology, Vol. 12, Issue 3
Integration of hydrogenase expression and hydrogen sensing in bacterial cell physiology
journal, April 2014
- Greening, Chris; Cook, Gregory M.
- Current Opinion in Microbiology, Vol. 18
Electron acceptor availability alters carbon and energy metabolism in a thermoacidophile
journal, July 2018
- Amenabar, Maximiliano J.; Colman, Daniel R.; Poudel, Saroj
- Environmental Microbiology, Vol. 20, Issue 7
Identification of an uptake hydrogenase for hydrogen-dependent dissimilatory azoreduction by Shewanella decolorationis S12
journal, July 2008
- Hong, Yi-Guo; Guo, Jun; Sun, Guo-Ping
- Applied Microbiology and Biotechnology, Vol. 80, Issue 3
How did LUCA make a living? Chemiosmosis in the origin of life
journal, January 2010
- Lane, Nick; Allen, John F.; Martin, William
- BioEssays, Vol. 32, Issue 4
The Crystal Structure of [Fe]-Hydrogenase Reveals the Geometry of the Active Site
journal, July 2008
- Shima, S.; Pilak, O.; Vogt, S.
- Science, Vol. 321, Issue 5888
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments
journal, April 2019
- Dong, Xiyang; Greening, Chris; Rattray, Jayne E.
- Nature Communications, Vol. 10, Issue 1
A Bacterial Electron-bifurcating Hydrogenase
journal, July 2012
- Schuchmann, Kai; Müller, Volker
- Journal of Biological Chemistry, Vol. 287, Issue 37
Direct and Reversible Hydrogenation of CO2 to Formate by a Bacterial Carbon Dioxide Reductase
journal, December 2013
- Schuchmann, K.; Muller, V.
- Science, Vol. 342, Issue 6164
Crystal structure of the nickel–iron hydrogenase from Desulfovibrio gigas
journal, February 1995
- Volbeda, Anne; Charon, Marie-Hélène; Piras, Claudine
- Nature, Vol. 373, Issue 6515
The hydrogenases of Thiocapsa roseopersicina
journal, February 2005
- Kovács, K. L.; Kovács, Á. T.; Maróti, G.
- Biochemical Society Transactions, Vol. 33, Issue 1
Hydrogen is an energy source for hydrothermal vent symbioses
journal, August 2011
- Petersen, Jillian M.; Zielinski, Frank U.; Pape, Thomas
- Nature, Vol. 476, Issue 7359
Bacterial fermentation and respiration processes are uncoupled in anoxic permeable sediments
journal, March 2019
- Kessler, Adam J.; Chen, Ya-Jou; Waite, David W.
- Nature Microbiology, Vol. 4, Issue 6
Organohalide respiratory chains: composition, topology and key enzymes
journal, March 2018
- Schubert, Torsten; Adrian, Lorenz; Sawers, R. Gary
- FEMS Microbiology Ecology, Vol. 94, Issue 4
The Iron-Hydrogenase of Thermotoga maritima Utilizes Ferredoxin and NADH Synergistically: a New Perspective on Anaerobic Hydrogen Production
journal, May 2009
- Schut, G. J.; Adams, M. W. W.
- Journal of Bacteriology, Vol. 191, Issue 13
Iron Hydrogenases and the Evolution of Anaerobic Eukaryotes
journal, November 2000
- Horner, David S.; Foster, Peter G.; Embley, T. Martin
- Molecular Biology and Evolution, Vol. 17, Issue 11
Hydrogenases for biological hydrogen production
journal, September 2011
- Kim, Dong-Hoon; Kim, Mi-Sun
- Bioresource Technology, Vol. 102, Issue 18
A H 2 -oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 : H2-dependent 1,2,3-trichlorobenzene reduction
journal, July 2017
- Hartwig, Stefanie; Dragomirova, Nadya; Kublik, Anja
- Environmental Microbiology Reports, Vol. 9, Issue 5
Volatile Fatty Acids and Hydrogen as Substrates for Sulfate-Reducing Bacteria in Anaerobic Marine Sediment
journal, January 1981
- Sørensen, Jan; Christensen, Dorte; Jørgensen, Bo Barker
- Applied and Environmental Microbiology, Vol. 42, Issue 1
Hydrogenases from Methanogenic Archaea, Nickel, a Novel Cofactor, and H 2 Storage
journal, June 2010
- Thauer, Rudolf K.; Kaster, Anne-Kristin; Goenrich, Meike
- Annual Review of Biochemistry, Vol. 79, Issue 1
Atmospheric trace gases support primary production in Antarctic desert surface soil
journal, December 2017
- Ji, Mukan; Greening, Chris; Vanwonterghem, Inka
- Nature, Vol. 552, Issue 7685
Rock comminution as a source of hydrogen for subglacial ecosystems
journal, October 2015
- Telling, J.; Boyd, E. S.; Bone, N.
- Nature Geoscience, Vol. 8, Issue 11