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Title: One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil

Journal Article · · Microbiology Resource Announcements
ORCiD logo [1]; ORCiD logo [1];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [3];  [2];  [2];  [2]; ORCiD logo [2]; ORCiD logo [1];
  1. Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, Austria
  2. Department of Energy, Joint Genome Institute, Berkeley, California, USA
  3. Materials Science and Technology, Engineered Materials, Los Alamos National Laboratory, Los Alamos, New Mexico, USA
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We report eight genomes from representatives of the phylum Acidobacteria subdivisions 1 and 3, isolated from soils. The genome sizes range from 4.9 to 6.7 Mb. Genomic analysis reveals putative genes for low- and high-affinity respiratory oxygen reductases, high-affinity hydrogenases, and the capacity to use a diverse collection of carbohydrates.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE; USDOE National Nuclear Security Administration (NNSA); USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
Grant/Contract Number:
89233218CNA000001; AC02-05CH11231
OSTI ID:
1595854
Report Number(s):
LA-UR-18-24028; 10.1128/mra.01087-19
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 5 Vol. 9; ISSN 2576-098X
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (15)

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data journal May 2013
High-quality draft assemblies of mammalian genomes from massively parallel sequence data journal December 2010
Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria journal August 2009
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments : Genomic insights into acidobacteria journal March 2018
Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils journal April 2012
Influence of Plant Polymers on the Distribution and Cultivation of Bacteria in the Phylum Acidobacteria journal November 2010
Acidobacteria Phylum Sequences in Uranium-Contaminated Subsurface Sediments Greatly Expand the Known Diversity within the Phylum journal March 2007
Isolation and Characterization of Soil Bacteria That Define Terriglobus gen. nov., in the Phylum Acidobacteria journal February 2007
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils journal February 2009
New Strategies for Cultivation and Detection of Previously Uncultured Microbes journal August 2004
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes journal March 2006
Phylogenetic Analysis and In Situ Identification of Bacteria Community Composition in an Acidic Sphagnum Peat Bog journal March 2006
Seasonal Changes in an Alpine Soil Bacterial Community in the Colorado Rocky Mountains journal May 2004
Isolation and characterization of members of the phylum Acidobacteria from soils text January 2007

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