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Title: Effect of processing and end groups on the crystal structure of polypeptoids studied by cryogenic electron microscopy at atomic length scales

Journal Article · · Soft Matter
DOI: https://doi.org/10.1039/c9sm00633h · OSTI ID:1594919

Cryogenic electron microscopy at atomic length scales was used to study the structure of self-assembled crystalline nanosheets obtained from a series of polypeptoids with the same chain architecture but with different end groups. While long-range order is enhanced by slowing down the self-assembly process, the dominant crystalline motif was found to be a sensitive function of both processing details and end group chemistry. In some cases, adjacent rows of polypeptoid molecules adopt anti-parallel V-shaped side chain conformations. In other cases, adjacent rows of polypeptoid molecules adopt parallel V-shaped side chain conformations. Interestingly, the unit cell is rectangular in both cases with dimensions a = 4.5 Å and c = 50 Å. In all cases, long-range order, quantified by the average number of concatenated unit cells of the same type, is more prevalent along the a direction.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1594919
Alternate ID(s):
OSTI ID: 1523296
Journal Information:
Soft Matter, Vol. 15, Issue 23; ISSN 1744-683X
Publisher:
Royal Society of ChemistryCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 14 works
Citation information provided by
Web of Science

References (55)

Lattice imaging in polyethylene single crystals journal March 1986
Peptoid Oligomers with α-Chiral, Aromatic Side Chains:  Sequence Requirements for the Formation of Stable Peptoid Helices journal July 2001
Self-assembly of crystalline nanotubes from monodisperse amphiphilic diblock copolypeptoid tiles journal March 2016
High-resolution electron microscopy of solution-grown crystals of poly (p-phenylene sulphide) journal April 1988
Crystallization of Syndiotactic Polystyrene in β-Form. 3. Energetic Analysis of the Incorporation Mechanism of Stacking Faults into the Crystal journal October 1997
Direct structure analysis of a paraffin solid solution. journal November 1990
Crystallization in Sequence-Defined Peptoid Diblock Copolymers Induced by Microphase Separation journal January 2014
Electron Crystallography of Biological Macromolecules journal October 1985
Universal Relationship between Molecular Structure and Crystal Structure in Peptoid Polymers and Prevalence of the cis Backbone Conformation journal January 2018
Imaging Unstained Synthetic Polymer Crystals and Defects on Atomic Length Scales Using Cryogenic Electron Microscopy journal September 2018
Liquid-Crystalline Phase Behavior in Polypeptoid Diblock Copolymers journal November 2018
Peptoid nanosheets as soluble, two-dimensional templates for calcium carbonate mineralization journal January 2015
Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions journal May 2018
Design, Synthesis, Assembly, and Engineering of Peptoid Nanosheets journal January 2016
Editorial journal December 1999
Shaken, Not Stirred: Collapsing a Peptoid Monolayer to Produce Free-Floating, Stable Nanosheets journal January 2012
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy journal February 2017
Extraordinarily Robust Polyproline Type I Peptoid Helices Generated via the Incorporation of α-Chiral Aromatic N -1-Naphthylethyl Side Chains journal October 2011
Antibody-Mimetic Peptoid Nanosheets for Molecular Recognition journal September 2013
Direct phase determination in electron crystallography: The crystal structure of an n-paraffin journal October 1990
Crystallization of Syndiotactic Polystyrene in β-Form. 1. Positional Identification of Stacking Faults in the Solution-Grown Single Crystals journal July 1997
Structure of purple membrane from halobacterium halobium: recording, measurement and evaluation of electron micrographs at 3.5 Å resolution journal January 1986
Gctf: Real-time CTF determination and correction journal January 2016
Free-floating ultrathin two-dimensional crystals from sequence-specific peptoid polymers journal April 2010
Images of paraffin monolayer crystals with perfect contrast: Minimization of beam-induced specimen motion journal January 2011
The growth of single crystals of linear polyethylene journal April 1957
Accelerated Submonomer Solid-Phase Synthesis of Peptoids Incorporating Multiple Substituted N -Aryl Glycine Monomers journal August 2015
Peptoid Polymers: A Highly Designable Bioinspired Material journal May 2013
Highly stable and self-repairing membrane-mimetic 2D nanomaterials assembled from lipid-like peptoids journal July 2016
High-resolution electron microscopy of polyethylene and paraffin crystals: Stability in the electron beam journal November 1984
Electron crystallography of epitaxially grown paraffin journal November 1984
Designable and dynamic single-walled stiff nanotubes assembled from sequence-defined peptoids journal January 2018
Tunable assembly of biomimetic peptoids as templates to control nanostructure catalytic activity journal January 2018
A Bayesian View on Cryo-EM Structure Determination journal January 2012
Image processing of partially periodic lattice images of polymers: The study of crystal defects journal February 1990
RELION: Implementation of a Bayesian approach to cryo-EM structure determination journal December 2012
Three-dimensional model of purple membrane obtained by electron microscopy journal September 1975
Tuning crystallization pathways through sequence engineering of biomimetic polymers journal April 2017
Direct imaging of molecular chains in a poly(p-xylylene) single crystal journal October 1982
Folding of a single-chain, information-rich polypeptoid sequence into a highly ordered nanosheet journal January 2011
Efficient method for the preparation of peptoids [oligo(N-substituted glycines)] by submonomer solid-phase synthesis journal December 1992
Unconstrained muscle-tendon workloops indicate resonance tuning as a mechanism for elastic limb behavior during terrestrial locomotion journal October 2015
Crystallization of Syndiotactic Polystyrene in β-Form. 2. Quantification of Stacking Faults in the Solution-Grown Single Crystals journal November 1997
2dx—User-friendly image processing for 2D crystals journal January 2007
Three-Dimensional Electron Microscopy of Macromolecular Assemblies book January 2006
An Electron Diffraction Examination of Some Linear High Polymers journal August 1938
Evidence for cis Amide Bonds in Peptoid Nanosheets journal April 2018
Three-dimensional model for twinning in polymer single crystals with inclined chains journal August 1989
A Peptoid Ribbon Secondary Structure journal April 2013
A Peptoid Ribbon Secondary Structure journal April 2013
Shaken, Not Stirred: Collapsing a Peptoid Monolayer To Produce Free-Floating, Stable Nanosheets journal December 2011
The growth of single crystals of linear polyethylene journal May 1996
Single-particle cryo-electron microscopy journal December 2015
Unconstrained muscle-tendon workloops indicate resonance tuning as a mechanism for elastic limb behavior during terrestrial locomotion text January 2015
A Bayesian view on cryo-EM structure determination conference May 2012