The quantitative relationship between structure and polarized spectroscopy in the FMO complex of Prosthecochloris aestuarii: refining experiments and simulations
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January 2002 |
How Proteins Trigger Excitation Energy Transfer in the FMO Complex of Green Sulfur Bacteria
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October 2006 |
Theory and Simulation of the Environmental Effects on FMO Electronic Transitions
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June 2011 |
Long-Lived Electronic Coherence in Dissipative Exciton Dynamics of Light-Harvesting Complexes
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September 2012 |
Atomistic Study of the Long-Lived Quantum Coherences in the Fenna-Matthews-Olson Complex
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February 2012 |
Toward Ab Initio Optical Spectroscopy of the Fenna–Matthews–Olson Complex
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November 2013 |
Molecular basis of the exciton–phonon interactions in the PE545 light-harvesting complex
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January 2014 |
Influence of Force Fields and Quantum Chemistry Approach on Spectral Densities of BChl a in Solution and in FMO Proteins
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July 2015 |
Modeling Electronic-Nuclear Interactions for Excitation Energy Transfer Processes in Light-Harvesting Complexes
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August 2016 |
Semiclassical Path Integral Dynamics: Photosynthetic Energy Transfer with Realistic Environment Interactions
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May 2016 |
First-Principles Models for Biological Light-Harvesting: Phycobiliprotein Complexes from Cryptophyte Algae
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June 2017 |
Local protein solvation drives direct down-conversion in phycobiliprotein PC645 via incoherent vibronic transport
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March 2018 |
Environmental effects on the dynamics in the light-harvesting complexes LH2 and LH3 based on molecular simulations
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November 2018 |
Coherence Spectroscopy in the Condensed Phase: Insights into Molecular Structure, Environment, and Interactions
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October 2017 |
Using coherence to enhance function in chemical and biophysical systems
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March 2017 |
Environment-assisted quantum transport
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March 2009 |
Highly efficient energy excitation transfer in light-harvesting complexes: The fundamental role of noise-assisted transport
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January 2009 |
Electronic Absorption Spectra from MM and ab Initio QM/MM Molecular Dynamics: Environmental Effects on the Absorption Spectrum of Photoactive Yellow Protein
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September 2012 |
Spectrum simulation and decomposition with nuclear ensemble: formal derivation and application to benzene, furan and 2-phenylfuran
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June 2012 |
Accurate and Inexpensive Prediction of the Color Optical Properties of Anthocyanins in Solution
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April 2015 |
Electronic Absorption Spectra and Solvatochromic Shifts by the Vertical Excitation Model: Solvated Clusters and Molecular Dynamics Sampling
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journal
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August 2014 |
Predicting solvatochromic shifts and colours of a solvated organic dye: The example of nile red
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March 2017 |
Convergence of Computed Aqueous Absorption Spectra with Explicit Quantum Mechanical Solvent
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April 2017 |
Vibrational structure of electronic transitions in conjugated molecules
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November 1972 |
A many‐body approach to the vibrational structure in molecular electronic spectra. I. Theory
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January 1976 |
Recursion relations for multi-dimensional Franck-Condon overlap integrals
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September 1994 |
An efficient approach for the calculation of Franck–Condon integrals of large molecules
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June 2005 |
Effective method for the computation of optical spectra of large molecules at finite temperature including the Duschinsky and Herzberg–Teller effect: The Qx band of porphyrin as a case study
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journal
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June 2008 |
General Time Dependent Approach to Vibronic Spectroscopy Including Franck–Condon, Herzberg–Teller, and Duschinsky Effects
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journal
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August 2013 |
Going beyond the vertical approximation with time-dependent density functional theory: Going beyond the vertical approximation with TD-DFT
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April 2016 |
Electronic excitation energies of molecules in solution: State specific and linear response methods for nonequilibrium continuum solvation models
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March 2005 |
Polarizable continuum model: Polarizable continuum model
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journal
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January 2012 |
Perspective: Polarizable continuum models for quantum-mechanical descriptions
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April 2016 |
Combining the ensemble and Franck-Condon approaches for calculating spectral shapes of molecules in solution
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January 2018 |
Modeling absorption spectra of molecules in solution
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journal
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September 2018 |
Optical spectra in the condensed phase: Capturing anharmonic and vibronic features using dynamic and static approaches
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August 2019 |
Hybrid molecular dynamics-quantum mechanics simulations of solute spectral properties in the condensed phase: Evaluation of simulation parameters: Evaluation of Simulation Parameters for a Hybrid MD-QM Method
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journal
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March 2007 |
The modeling of the absorption lineshape for embedded molecules through a polarizable QM/MM approach
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journal
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January 2018 |
Modeling the absorption lineshape of embedded systems from molecular dynamics: A tutorial review
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journal
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September 2018 |
Solvent Effects on Ground and Excited Electronic State Structures of the Push-Pull Chromophore Julolidinyl- n - N , N ‘-diethylthiobarbituric Acid
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journal
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November 2001 |
Solvent effects on ground and excited electronic state structures of p -nitroaniline
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journal
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July 2001 |
Vibronic effects on solvent dependent linear and nonlinear optical properties of push-pull chromophores: Julolidinemalononitrile
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journal
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February 2002 |
Excited-State Electronic Structure with Configuration Interaction Singles and Tamm–Dancoff Time-Dependent Density Functional Theory on Graphical Processing Units
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journal
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May 2011 |
Linear-scaling time-dependent density-functional theory in the linear response formalism
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August 2013 |
Linear-scaling time-dependent density-functional theory beyond the Tamm-Dancoff approximation: Obtaining efficiency and accuracy with in situ optimised local orbitals
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journal
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November 2015 |
Convergence of QM/MM and Cluster Models for the Spectroscopic Properties of the Oxygen-Evolving Complex in Photosystem II
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journal
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July 2013 |
Rhodopsin Absorption from First Principles: Bypassing Common Pitfalls
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journal
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April 2013 |
Convergence of Excitation Energies in Mixed Quantum and Classical Solvent: Comparison of Continuum and Point Charge Models
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journal
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November 2016 |
Solvent Effects on Electronic Excitations of an Organic Chromophore
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March 2016 |
A Theory of Intensity Distribution in Band Systems
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December 1926 |
Nuclear Motions Associated with Electron Transitions in Diatomic Molecules
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December 1928 |
Fluorescence and absorption of large anharmonic molecules - spectroscopy without eigenstates
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March 1985 |
Quantum and classical relaxation rates from classical simulations
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June 1994 |
Evaluation of Quantum Correlation Functions from Classical Data †
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August 2002 |
Quantum Dynamics and Vibrational Relaxation
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journal
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November 1999 |
Quantum statistics and classical mechanics: Real time correlation functions from ring polymer molecular dynamics
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journal
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August 2004 |
Quantum corrections to classical time-correlation functions: Hydrogen bonding and anharmonic floppy modes
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September 2004 |
On the alternatives for bath correlators and spectral densities from mixed quantum-classical simulations
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December 2012 |
Low-lying electronic excitations of the green fluorescent protein chromophore
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July 2000 |
Absorption Spectra of Photoactive Yellow Protein Chromophores in Vacuum
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journal
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October 2005 |
Quantum Chemical Benchmark Studies of the Electronic Properties of the Green Fluorescent Protein Chromophore. 1. Electronically Excited and Ionized States of the Anionic Chromophore in the Gas Phase
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journal
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June 2009 |
On the Photodetachment from the Green Fluorescent Protein Chromophore
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journal
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May 2013 |
The Lineshape of the Electronic Spectrum of the Green Fluorescent Protein Chromophore, Part II: Solution Phase
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journal
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September 2014 |
Unraveling electronic absorption spectra using nuclear quantum effects: Photoactive yellow protein and green fluorescent protein chromophores in water
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journal
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July 2018 |
Development and testing of a general amber force field
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journal
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January 2004 |
Comparison of simple potential functions for simulating liquid water
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journal
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July 1983 |
Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation
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journal
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July 2003 |
The implementation of a fast and accurate QM/MM potential method in Amber
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journal
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January 2008 |
Fragment Quantum Mechanical Calculation of Proteins and Its Applications
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journal
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May 2014 |
How Large Should the QM Region Be in QM/MM Calculations? The Case of Catechol O -Methyltransferase
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journal
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October 2016 |
Systematic Quantum Mechanical Region Determination in QM/MM Simulation
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journal
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January 2017 |
Time-dependent density functional theory within the Tamm–Dancoff approximation
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journal
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December 1999 |
A new hybrid exchange–correlation functional using the Coulomb-attenuating method (CAM-B3LYP)
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journal
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July 2004 |
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen
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journal
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January 1989 |
Theoretical Characterization of the Spectral Density of the Water-Soluble Chlorophyll-Binding Protein from Combined Quantum Mechanics/Molecular Mechanics Molecular Dynamics Simulations
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November 2015 |
Effect of Chromophore Potential Model on the Description of Exciton–Phonon Interactions
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journal
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July 2015 |
Classical Force Fields Tailored for QM Applications: Is It Really a Feasible Strategy?
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journal
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September 2017 |
QUBEKit: Automating the Derivation of Force Field Parameters from Quantum Mechanics
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journal
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January 2019 |
Photosynthetic Light-Harvesting Is Tuned by the Heterogeneous Polarizable Environment of the Protein
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journal
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March 2011 |
Energy Flow in the Cryptophyte PE545 Antenna Is Directed by Bilin Pigment Conformation
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journal
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October 2012 |
Towards an ab initio description of the optical spectra of light-harvesting antennae: application to the CP29 complex of photosystem II
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journal
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January 2015 |
Impact of Electronic Fluctuations and Their Description on the Exciton Dynamics in the Light-Harvesting Complex PE545
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journal
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February 2017 |
A Hamiltonian electrostatic coupling scheme for hybrid Car–Parrinello molecular dynamics simulations
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journal
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April 2002 |
Optimization of quantum mechanical molecular mechanical partitioning schemes: Gaussian delocalization of molecular mechanical charges and the double link atom method
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journal
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December 2002 |
Analysis of polarization in QM/MM modelling of biologically relevant hydrogen bonds
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journal
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September 2008 |
A Simple QM/MM Approach for Capturing Polarization Effects in Protein−Ligand Binding Free Energy Calculations
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journal
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May 2011 |
The Charge Transfer Problem in Density Functional Theory Calculations of Aqueously Solvated Molecules
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journal
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October 2013 |
Sensitive Circular Dichroism Marker for the Chromophore Environment of Photoactive Yellow Protein: Assignment of the 307 and 318 nm Bands to the n → π* Transition of the Carbonyl
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journal
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January 2005 |
Proton Disorder in Ice Ih and Inhomogeneous Broadening in Two-Dimensional Infrared Spectroscopy
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journal
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August 2013 |
Low-barrier hydrogen bond in photoactive yellow protein
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journal
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January 2009 |