Genome-Wide Association Mapping of Anthracnose (Colletotrichum sublineolum) Resistance in the U.S. Sorghum Association Panel
Abstract
The productivity and profitability of sorghum [Sorghum bicolor (L.) Moench] is reduced by susceptibility to fungal diseases, such as anthracnose (Colletotrichum sublineolum P. Henn.). A limited number of resistant accessions are present in the temperate-adapted germplasm; other exotic sources of resistance are not currently available for breeding programs. Among 335 accessions available to breeders from a previously genotyped sorghum association panel (SAP), we found that 75 were resistant to anthracnose. A phylogenetic analysis of these accessions showed high genetic diversity and multiple resistance sources. Genome-wide association scans (GWAS) were conducted using 268,289 single-nucleotide polymorphisms to identify loci associated with anthracnose resistance. Using logistic regressions for binary measures of resistance responses, we identified three loci within a region on chromosome 5 that have been previously associated with three sources of anthracnose resistance. A GWAS limited to Caudatum germplasm identified an association with a region on chromosome 1 and with the same previous region on chromosome 5. Candidate genes within these loci were related to R-gene families, signaling cascades, and transcriptional reprogramming, suggesting that the resistance response is controlled by multiple defense mechanisms. The strategic integration of exotic resistant germplasm into the SAP is needed to identify additional rare resistance alleles viamore »
- Authors:
-
- US Dept. of Agriculture (USDA)-Agricultural Research Service (ARS), Mayaguez, Puerto Rico (United States)
- US Dept. of Agriculture (USDA)-Agricultural Research Service (ARS), College Station, TX (United States)
- Clemson Univ., Clemson, SC (United States)
- US Dept. of Agriculture (USDA)-Agricultural Research Service (ARS), Tifton, GA (United States)
- Publication Date:
- Research Org.:
- US Dept. of Agriculture (USDA)-Agricultural Research Service (ARS), Mayaguez, Puerto Rico (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1593798
- Report Number(s):
- USDA-ARS-CRIS-6090-21000-053-00-D
Journal ID: ISSN 1940-3372; TPG2
- Grant/Contract Number:
- SC0014171
- Resource Type:
- Accepted Manuscript
- Journal Name:
- The Plant Genome
- Additional Journal Information:
- Journal Volume: 11; Journal Issue: 2; Journal ID: ISSN 1940-3372
- Publisher:
- Alliance of Crop, Soil, and Environmental Science Societies
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Sorghum; Anthracnose; GWAS; Sorghum association panel; Plant Sciences; Genetics & Heredity
Citation Formats
Cuevas, Hugo E., Prom, Louis K., Cooper, Elizabeth A., Knoll, Joseph E., and Ni, Xinzhi. Genome-Wide Association Mapping of Anthracnose (Colletotrichum sublineolum) Resistance in the U.S. Sorghum Association Panel. United States: N. p., 2018.
Web. doi:10.3835/plantgenome2017.11.0099.
Cuevas, Hugo E., Prom, Louis K., Cooper, Elizabeth A., Knoll, Joseph E., & Ni, Xinzhi. Genome-Wide Association Mapping of Anthracnose (Colletotrichum sublineolum) Resistance in the U.S. Sorghum Association Panel. United States. https://doi.org/10.3835/plantgenome2017.11.0099
Cuevas, Hugo E., Prom, Louis K., Cooper, Elizabeth A., Knoll, Joseph E., and Ni, Xinzhi. Thu .
"Genome-Wide Association Mapping of Anthracnose (Colletotrichum sublineolum) Resistance in the U.S. Sorghum Association Panel". United States. https://doi.org/10.3835/plantgenome2017.11.0099. https://www.osti.gov/servlets/purl/1593798.
@article{osti_1593798,
title = {Genome-Wide Association Mapping of Anthracnose (Colletotrichum sublineolum) Resistance in the U.S. Sorghum Association Panel},
author = {Cuevas, Hugo E. and Prom, Louis K. and Cooper, Elizabeth A. and Knoll, Joseph E. and Ni, Xinzhi},
abstractNote = {The productivity and profitability of sorghum [Sorghum bicolor (L.) Moench] is reduced by susceptibility to fungal diseases, such as anthracnose (Colletotrichum sublineolum P. Henn.). A limited number of resistant accessions are present in the temperate-adapted germplasm; other exotic sources of resistance are not currently available for breeding programs. Among 335 accessions available to breeders from a previously genotyped sorghum association panel (SAP), we found that 75 were resistant to anthracnose. A phylogenetic analysis of these accessions showed high genetic diversity and multiple resistance sources. Genome-wide association scans (GWAS) were conducted using 268,289 single-nucleotide polymorphisms to identify loci associated with anthracnose resistance. Using logistic regressions for binary measures of resistance responses, we identified three loci within a region on chromosome 5 that have been previously associated with three sources of anthracnose resistance. A GWAS limited to Caudatum germplasm identified an association with a region on chromosome 1 and with the same previous region on chromosome 5. Candidate genes within these loci were related to R-gene families, signaling cascades, and transcriptional reprogramming, suggesting that the resistance response is controlled by multiple defense mechanisms. The strategic integration of exotic resistant germplasm into the SAP is needed to identify additional rare resistance alleles via GWAS.},
doi = {10.3835/plantgenome2017.11.0099},
journal = {The Plant Genome},
number = 2,
volume = 11,
place = {United States},
year = {Thu Mar 29 00:00:00 EDT 2018},
month = {Thu Mar 29 00:00:00 EDT 2018}
}
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