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Title: Metabolite composition of sinking particles differs from surface suspended particles across a latitudinal transect in the South Atlantic

Authors:
ORCiD logo [1]; ORCiD logo [2];  [2]; ORCiD logo [3];  [4]; ORCiD logo [5]; ORCiD logo [2]; ORCiD logo [2]
  1. MIT/WHOI Joint Program in Oceanography/Applied Ocean Sciences and Engineering, Department of Marine Chemistry and GeochemistryWoods Hole Oceanographic Institution Woods Hole Massachusetts
  2. Department of Marine Chemistry and GeochemistryWoods Hole Oceanographic Institution Woods Hole Massachusetts
  3. Department of Civil, Environmental, and Geo‐ EngineeringUniversity of Minnesota Minneapolis Minnesota
  4. Department of Microbiology and ImmunologyUniversity of British Columbia Vancouver British Columbia Canada, Department of Earth and Atmospheric SciencesUniversity of Alberta Edmonton Alberta Canada
  5. Department of Microbiology and ImmunologyUniversity of British Columbia Vancouver British Columbia Canada, Graduate Program in BioinformaticsUniversity of British Columbia Vancouver British Columbia Canada, Genome Science and Technology ProgramUniversity of British Columbia Vancouver British Columbia Canada, ECOSCOPE Training ProgramUniversity of British Columbia Vancouver British Columbia Canada, Peter Wall Institute for Advanced StudiesUniversity of British Columbia Vancouver British Columbia Canada
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1592816
Alternate Identifier(s):
OSTI ID: 1592818
Grant/Contract Number:  
DE‐AC02‐05CH11231
Resource Type:
Published Article
Journal Name:
Limnology and Oceanography
Additional Journal Information:
Journal Name: Limnology and Oceanography Journal Volume: 65 Journal Issue: 1; Journal ID: ISSN 0024-3590
Publisher:
Wiley Blackwell (John Wiley & Sons)
Country of Publication:
United States
Language:
English

Citation Formats

Johnson, Winifred M., Longnecker, Krista, Kido Soule, Melissa C., Arnold, William A., Bhatia, Maya P., Hallam, Steven J., Van Mooy, Benjamin A. S., and Kujawinski, Elizabeth B. Metabolite composition of sinking particles differs from surface suspended particles across a latitudinal transect in the South Atlantic. United States: N. p., 2019. Web. doi:10.1002/lno.11255.
Johnson, Winifred M., Longnecker, Krista, Kido Soule, Melissa C., Arnold, William A., Bhatia, Maya P., Hallam, Steven J., Van Mooy, Benjamin A. S., & Kujawinski, Elizabeth B. Metabolite composition of sinking particles differs from surface suspended particles across a latitudinal transect in the South Atlantic. United States. doi:10.1002/lno.11255.
Johnson, Winifred M., Longnecker, Krista, Kido Soule, Melissa C., Arnold, William A., Bhatia, Maya P., Hallam, Steven J., Van Mooy, Benjamin A. S., and Kujawinski, Elizabeth B. Wed . "Metabolite composition of sinking particles differs from surface suspended particles across a latitudinal transect in the South Atlantic". United States. doi:10.1002/lno.11255.
@article{osti_1592816,
title = {Metabolite composition of sinking particles differs from surface suspended particles across a latitudinal transect in the South Atlantic},
author = {Johnson, Winifred M. and Longnecker, Krista and Kido Soule, Melissa C. and Arnold, William A. and Bhatia, Maya P. and Hallam, Steven J. and Van Mooy, Benjamin A. S. and Kujawinski, Elizabeth B.},
abstractNote = {},
doi = {10.1002/lno.11255},
journal = {Limnology and Oceanography},
number = 1,
volume = 65,
place = {United States},
year = {2019},
month = {7}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1002/lno.11255

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Works referenced in this record:

Temporal changes in particle-associated microbial communities after interception by nonlethal sediment traps
journal, October 2013

  • LeCleir, Gary R.; DeBruyn, Jennifer M.; Maas, Elizabeth W.
  • FEMS Microbiology Ecology, Vol. 87, Issue 1
  • DOI: 10.1111/1574-6941.12213

The degradation of 14C-labelled phosphatidyl choline in soil
journal, January 1983


Osmoregulation in Bacillus subtilis: synthesis of the osmoprotectant glycine betaine from exogenously provided choline.
journal, January 1994


Extraction efficiency and quantification of dissolved metabolites in targeted marine metabolomics: Matrix effects in marine metabolomics
journal, March 2017

  • Johnson, Winifred M.; Kido Soule, Melissa C.; Kujawinski, Elizabeth B.
  • Limnology and Oceanography: Methods, Vol. 15, Issue 4
  • DOI: 10.1002/lom3.10181

Environmental metabolomics: Analytical strategies
journal, December 2015


Acidic Acetonitrile for Cellular Metabolome Extraction from Escherichia coli
journal, August 2007

  • Rabinowitz, Joshua D.; Kimball, Elizabeth
  • Analytical Chemistry, Vol. 79, Issue 16
  • DOI: 10.1021/ac070470c

Cellular Choline and Glycine Betaine Pools Impact Osmoprotection and Phospholipase C Production in Pseudomonas aeruginosa
journal, June 2012

  • Fitzsimmons, L. F.; Hampel, K. J.; Wargo, M. J.
  • Journal of Bacteriology, Vol. 194, Issue 17
  • DOI: 10.1128/JB.00596-12

Entry of Escherichia coli into stationary phase is indicated by endogenous and exogenous accumulation of nucleobases.
journal, January 1995


Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
journal, December 2004

  • Moran, Mary Ann; Buchan, Alison; González, José M.
  • Nature, Vol. 432, Issue 7019
  • DOI: 10.1038/nature03170

Intracellular Organic Osmolytes: Function and Regulation
journal, February 2008

  • Burg, Maurice B.; Ferraris, Joan D.
  • Journal of Biological Chemistry, Vol. 283, Issue 12
  • DOI: 10.1074/jbc.R700042200

Living with water stress: evolution of osmolyte systems
journal, September 1982


Bacterial and eukaryotic intact polar lipids in the eastern subtropical South Pacific: Water-column distribution, planktonic sources, and fatty acid composition
journal, November 2010

  • Van Mooy, Benjamin A. S.; Fredricks, Helen F.
  • Geochimica et Cosmochimica Acta, Vol. 74, Issue 22
  • DOI: 10.1016/j.gca.2010.08.026

Global niche of marine anaerobic metabolisms expanded by particle microenvironments
journal, March 2018


Understanding the export of biogenic particles in oceanic waters: Is there consensus?
journal, March 2007


Organic osmolytes as compatible, metabolic and counteracting cytoprotectants in high osmolarity and other stresses
journal, August 2005

  • Yancey, P. H.
  • Journal of Experimental Biology, Vol. 208, Issue 15
  • DOI: 10.1242/jeb.01730

Physiological aspects of the production and conversion of DMSP in marine algae and higher plants
journal, August 2000


Marine snow, organic solute plumes, and optimal chemosensory behavior of bacteria
journal, August 2001


A cross-platform toolkit for mass spectrometry and proteomics
journal, October 2012

  • Chambers, Matthew C.; Maclean, Brendan; Burke, Robert
  • Nature Biotechnology, Vol. 30, Issue 10
  • DOI: 10.1038/nbt.2377

Metabolomic Analysis and Visualization Engine for LC−MS Data
journal, December 2010

  • Melamud, Eugene; Vastag, Livia; Rabinowitz, Joshua D.
  • Analytical Chemistry, Vol. 82, Issue 23
  • DOI: 10.1021/ac1021166

Compositions and transport of lipid biomarkers through the water column and surficial sediments of the equatorial Pacific Ocean
journal, January 1997

  • Wakeham, Stuart G.; Hedges, John I.; Lee, Cindy
  • Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 44, Issue 9-10
  • DOI: 10.1016/S0967-0645(97)00035-0

Osmotically Controlled Synthesis of the Compatible Solute Proline Is Critical for Cellular Defense of Bacillus subtilis against High Osmolarity
journal, July 2011

  • Brill, J.; Hoffmann, T.; Bleisteiner, M.
  • Journal of Bacteriology, Vol. 193, Issue 19
  • DOI: 10.1128/JB.05490-11

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
journal, June 2009

  • Bennett, Bryson D.; Kimball, Elizabeth H.; Gao, Melissa
  • Nature Chemical Biology, Vol. 5, Issue 8
  • DOI: 10.1038/nchembio.186

Effect of coagulation on a model planktonic food web
journal, January 2001


Synchronized Regulation of Different Zwitterionic Metabolites in the Osmoadaption of Phytoplankton
journal, June 2013


Purine catabolic pathway revealed by transcriptomics in the model marine bacterium Ruegeria pomeroyi DSS-3
journal, November 2015


Colonization in the Photic Zone and Subsequent Changes during Sinking Determine Bacterial Community Composition in Marine Snow
journal, December 2014

  • Thiele, Stefan; Fuchs, Bernhard M.; Amann, Rudolf
  • Applied and Environmental Microbiology, Vol. 81, Issue 4
  • DOI: 10.1128/AEM.02570-14

Latitudinal comparisons of equatorial Pacific zooplankton
journal, January 2002

  • Roman, M. R.; Dam, H. G.; Le Borgne, R.
  • Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 49, Issue 13-14
  • DOI: 10.1016/S0967-0645(02)00054-1

Mechanisms and Rates of Bacterial Colonization of Sinking Aggregates
journal, August 2002


Construction and Characterization of a Human Bacterial Artificial Chromosome Library
journal, June 1996


Annual DMSP contribution to S and C fluxes through phytoplankton and bacterioplankton in a NW Mediterranean coastal site
journal, September 2009

  • Simó, R.; Vila-Costa, M.; Alonso-Sáez, L.
  • Aquatic Microbial Ecology, Vol. 57
  • DOI: 10.3354/ame01325

Sea snow microcosms
journal, November 2001

  • Azam, Farooq; Long, Richard A.
  • Nature, Vol. 414, Issue 6863
  • DOI: 10.1038/35107174

Direct observations of the mass flocculation of diatom blooms: characteristics, settling velocities and formation of diatom aggregates
journal, February 1989

  • Alldredge, A. L.; Gotschalk, C. C.
  • Deep Sea Research Part A. Oceanographic Research Papers, Vol. 36, Issue 2
  • DOI: 10.1016/0198-0149(89)90131-3

Choline-glycine betaine pathway confers a high level of osmotic tolerance in Escherichia coli.
journal, January 1986


Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre
journal, May 2015


Unusual organic osmolytes in deep-sea animals: adaptations to hydrostatic pressure and other perturbants
journal, November 2002

  • Yancey, Paul H.; Blake, Wendy R.; Conley, James
  • Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, Vol. 133, Issue 3
  • DOI: 10.1016/S1095-6433(02)00182-4

Production of glycine betaine and dimethylsulfoniopropionate in marine phytoplankton. I. Batch cultures
journal, November 1999

  • Keller, M. D.; Kiene, R. P.; Matrai, P. A.
  • Marine Biology, Vol. 135, Issue 2
  • DOI: 10.1007/s002270050621

Bacterial growth and grazing on diatom aggregates: Respiratory carbon turnover as a function of aggregate size and sinking velocity
journal, November 2000


Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP)
journal, January 2011

  • Reisch, Chris R.; Moran, Mary Ann; Whitman, William B.
  • Frontiers in Microbiology, Vol. 2
  • DOI: 10.3389/fmicb.2011.00172

Novel techniques for collection of sinking particles in the ocean and determining their settling rates: Sinking particle collection techniques
journal, December 2005

  • Peterson, Michael L.; Wakeham, Stuart G.; Lee, Cindy
  • Limnology and Oceanography: Methods, Vol. 3, Issue 12
  • DOI: 10.4319/lom.2005.3.520

Intact polar lipid export in the temperate western North Atlantic and Sargasso Sea
journal, December 2017


Composition and degradation of marine particles with different settling velocities in the northwestern Mediterranean Sea
journal, July 2007

  • Goutx, Madeleine; Wakeham, Stuart G.; Lee, Cindy
  • Limnology and Oceanography, Vol. 52, Issue 4
  • DOI: 10.4319/lo.2007.52.4.1645

Bacterial Succession on Sinking Particles in the Ocean's Interior
journal, November 2017

  • Pelve, Erik A.; Fontanez, Kristina M.; DeLong, Edward F.
  • Frontiers in Microbiology, Vol. 8
  • DOI: 10.3389/fmicb.2017.02269

The role of biominerals in the sinking flux and preservation of amino acids in the Southern Ocean along 170°W
journal, March 2003

  • Ingalls, Anitra E.; Lee, Cindy; Wakeham, Stuart G.
  • Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 50, Issue 3-4
  • DOI: 10.1016/S0967-0645(02)00592-1

Glycine betaine aldehyde dehydrogenase from Bacillus subtilis : characterization of an enzyme required for the synthesis of the osmoprotectant glycine betaine
journal, September 1997

  • Boch, J.; Nau-Wagner, Gabriele; Kneip, Susanne
  • Archives of Microbiology, Vol. 168, Issue 4
  • DOI: 10.1007/s002030050500

The flux of bio- and lithogenic material associated with sinking particles in the mesopelagic “twilight zone” of the northwest and North Central Pacific Ocean
journal, July 2008

  • Lamborg, C. H.; Buesseler, K. O.; Valdes, J.
  • Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 55, Issue 14-15
  • DOI: 10.1016/j.dsr2.2008.04.011

Global assessment of ocean carbon export by combining satellite observations and food-web models
journal, March 2014

  • Siegel, D. A.; Buesseler, K. O.; Doney, S. C.
  • Global Biogeochemical Cycles, Vol. 28, Issue 3
  • DOI: 10.1002/2013GB004743

A compendium of multi-omic sequence information from the Saanich Inlet water column
journal, October 2017

  • Hawley, Alyse K.; Torres-Beltrán, Mónica; Zaikova, Elena
  • Scientific Data, Vol. 4, Issue 1
  • DOI: 10.1038/sdata.2017.160

Sinking phytoplankton associated with carbon flux in the Atlantic Ocean: Sinking phytoplankton and carbon flux
journal, May 2016

  • Durkin, Colleen A.; Van Mooy, Benjamin A. S.; Dyhrman, Sonya T.
  • Limnology and Oceanography, Vol. 61, Issue 4
  • DOI: 10.1002/lno.10253

Evidence for non-selective preservation of organic matter in sinking marine particles
journal, February 2001

  • Hedges, John I.; Baldock, Jeffrey A.; Gélinas, Yves
  • Nature, Vol. 409, Issue 6822
  • DOI: 10.1038/35057247

Molecular indicators of diagenetic status in marine organic matter
journal, December 1997


Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
journal, July 1993

  • DeLong, Edward F.; Franks, Diana G.; Alldredge, Alice L.
  • Limnology and Oceanography, Vol. 38, Issue 5
  • DOI: 10.4319/lo.1993.38.5.0924