Assessment of peritoneal microbial features and tumor marker levels as potential diagnostic tools for ovarian cancer

Miao, Ruizhong; Badger, Taylor C.; Groesch, Kathleen; Diaz-Sylvester, Paula L.; Wilson, Teresa; Ghareeb, Allen; Martin, Jongjin Anne; Cregger, Melissa; Welge, Michael; Bushell, Colleen; Auvil, Loretta; Zhu, Ruoqing; Brard, Laurent; Braundmeier-Fleming, Andrea; Laganà, ed., Antonio Simone

doi:10.1371/journal.pone.0227707

Title: Assessment of peritoneal microbial features and tumor marker levels as potential diagnostic tools for ovarian cancer

Journal Article · 09 January 2020 · PLoS ONE

DOI: https://doi.org/10.1371/journal.pone.0227707 · OSTI ID:1581861

Miao, Ruizhong; Badger, Taylor C.; Groesch, Kathleen;

; Wilson, Teresa; Ghareeb, Allen; Martin, Jongjin Anne; Cregger, Melissa; Welge, Michael;

; Auvil, Loretta; Zhu, Ruoqing; Brard, Laurent; Braundmeier-Fleming, Andrea; Laganà, ed., Antonio Simone

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Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1581861

Journal Information:: PLoS ONE, Journal Name: PLoS ONE Journal Issue: 1 Vol. 15; ISSN 1932-6203

Publisher:: Public Library of ScienceCopyright Statement

Country of Publication:: United States

Language:: English

References (73)

Screening for Ovarian Cancer: US Preventive Services Task Force Recommendation Statement Grossman, David C.; Curry, Susan J.; Owens, Douglas K. JAMA, Vol. 319, Issue 6 https://doi.org/10.1001/jama.2017.21926	journal	February 2018
Diagnostic value of derived neutrophil‐to‐lymphocyte ratio in patients with ovarian cancer Wu, Yang‐yang; Qin, Yuan‐yuan; Qin, Jin‐qiu Journal of Clinical Laboratory Analysis, Vol. 33, Issue 4 https://doi.org/10.1002/jcla.22833	journal	January 2019
Feasibility and surgical outcomes of conventional and robot-assisted laparoscopy for early-stage ovarian cancer: a retrospective, multicenter analysis Bellia, Adriano; Vitale, Salvatore Giovanni; Laganà, Antonio Simone Archives of Gynecology and Obstetrics, Vol. 294, Issue 3 https://doi.org/10.1007/s00404-016-4087-9	journal	April 2016
The gut microbiome, symptoms, and targeted interventions in children with cancer: a systematic review Bai, Jinbing; Behera, Madhusmita; Bruner, Deborah Watkins Supportive Care in Cancer, Vol. 26, Issue 2 https://doi.org/10.1007/s00520-017-3982-3	journal	November 2017
CA 125 in peritoneal fluid and serum from patients with benign gynecologic conditions and ovarian cancer Hunter, V. J.; Weinberg, J. B.; Haney, A. F. Gynecologic Oncology, Vol. 36, Issue 2 https://doi.org/10.1016/0090-8258(90)90165-H	journal	February 1990
Diagnosis of ruptured ectopic pregnancy with peritoneal lavage Roberts, Mont R.; Jackimczyk, Kenneth; Marx, John Annals of Emergency Medicine, Vol. 11, Issue 10 https://doi.org/10.1016/S0196-0644(82)80431-9	journal	October 1982
The early detection of ovarian cancer: from traditional methods to proteomics. Can we really do better than serum CA-125? Nossov, Vladimir; Amneus, Malaika; Su, Feng American Journal of Obstetrics and Gynecology, Vol. 199, Issue 3 https://doi.org/10.1016/j.ajog.2008.04.009	journal	September 2008
HE4 in the differential diagnosis of ovarian masses Granato, Teresa; Porpora, Maria Grazia; Longo, Flavia Clinica Chimica Acta, Vol. 446 https://doi.org/10.1016/j.cca.2015.03.047	journal	June 2015
TLR4 blockade using TAK-242 suppresses ovarian and breast cancer cells invasion through the inhibition of extracellular matrix degradation and epithelial-mesenchymal transition Zandi, Zahra; Kashani, Bahareh; Poursani, Ensieh M. European Journal of Pharmacology, Vol. 853 https://doi.org/10.1016/j.ejphar.2019.03.046	journal	June 2019
Robotic Surgery in Women With Ovarian Cancer: Surgical Technique and Evidence of Clinical Outcomes Minig, Lucas; Padilla Iserte, Pablo; Zorrero, Cristina Journal of Minimally Invasive Gynecology, Vol. 23, Issue 3 https://doi.org/10.1016/j.jmig.2015.10.014	journal	March 2016
Gut microbes as future therapeutics in treating inflammatory and infectious diseases: Lessons from recent findings Mukherjee, Suprabhat; Joardar, Nikhilesh; Sengupta, Subhasree The Journal of Nutritional Biochemistry, Vol. 61 https://doi.org/10.1016/j.jnutbio.2018.07.010	journal	November 2018
Gut microbiome composition in lean patients with NASH is associated with liver damage independent of caloric intake: A prospective pilot study Duarte, S. M. B.; Stefano, J. T.; Miele, L. Nutrition, Metabolism and Cardiovascular Diseases, Vol. 28, Issue 4 https://doi.org/10.1016/j.numecd.2017.10.014	journal	April 2018
Variable selection using random forests Genuer, Robin; Poggi, Jean-Michel; Tuleau-Malot, Christine Pattern Recognition Letters, Vol. 31, Issue 14 https://doi.org/10.1016/j.patrec.2010.03.014	journal	October 2010
The use of multiple novel tumor biomarkers for the detection of ovarian carcinoma in patients with a pelvic mass Moore, Richard G.; Brown, Amy K.; Miller, M. Craig Gynecologic Oncology, Vol. 108, Issue 2 https://doi.org/10.1016/j.ygyno.2007.10.017	journal	February 2008
Use of a Symptom Index, CA125, and HE4 to predict ovarian cancer Andersen, M. Robyn; Goff, Barbara A.; Lowe, Kimberly A. Gynecologic Oncology, Vol. 116, Issue 3 https://doi.org/10.1016/j.ygyno.2009.10.087	journal	March 2010
The vaginal and gastrointestinal microbiomes in gynecologic cancers: A review of applications in etiology, symptoms and treatment Chase, Dana; Goulder, Alison; Zenhausern, Frederic Gynecologic Oncology, Vol. 138, Issue 1 https://doi.org/10.1016/j.ygyno.2015.04.036	journal	July 2015
Random Forests Breiman, Leo Machine Learning, Vol. 45, Issue 1, p. 5-32 https://doi.org/10.1023/A:1010933404324	journal	January 2001
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms Caporaso, J. Gregory; Lauber, Christian L.; Walters, William A. The ISME Journal, Vol. 6, Issue 8 https://doi.org/10.1038/ismej.2012.8	journal	March 2012
Dietary modulation of the microbiome affects autoinflammatory disease Lukens, John R.; Gurung, Prajwal; Vogel, Peter Nature, Vol. 516, Issue 7530 https://doi.org/10.1038/nature13788	journal	September 2014
QIIME allows analysis of high-throughput community sequencing data Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse Nature Methods, Vol. 7, Issue 5 https://doi.org/10.1038/nmeth.f.303	journal	April 2010
Microbiota: a key orchestrator of cancer therapy Roy, Soumen; Trinchieri, Giorgio Nature Reviews Cancer, Vol. 17, Issue 5 https://doi.org/10.1038/nrc.2017.13	journal	March 2017
Gut microbiota, metabolites and host immunity Rooks, Michelle G.; Garrett, Wendy S. Nature Reviews Immunology, Vol. 16, Issue 6 https://doi.org/10.1038/nri.2016.42	journal	May 2016
The microbiome and rheumatoid arthritis Scher, Jose U.; Abramson, Steven B. Nature Reviews Rheumatology, Vol. 7, Issue 10 https://doi.org/10.1038/nrrheum.2011.121	journal	August 2011
HE4 and CA125 as a diagnostic test in ovarian cancer: prospective validation of the Risk of Ovarian Malignancy Algorithm Van Gorp, T.; Cadron, I.; Despierre, E. British Journal of Cancer, Vol. 104, Issue 5 https://doi.org/10.1038/sj.bjc.6606092	journal	February 2011
Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status Javurek, Angela B.; Spollen, William G.; Ali, Amber M. Mann Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep23027	journal	March 2016
Interactions Between the Intestinal Microbiome and Liver Diseases Schnabl, Bernd; Brenner, David A. Gastroenterology, Vol. 146, Issue 6 https://doi.org/10.1053/j.gastro.2014.01.020	journal	May 2014
The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead Kostic, Aleksandar D.; Xavier, Ramnik J.; Gevers, Dirk Gastroenterology, Vol. 146, Issue 6 https://doi.org/10.1053/j.gastro.2014.02.009	journal	May 2014
Imaging and Differential Diagnosis of Ovarian Cancer Shetty, Mahesh Seminars in Ultrasound, CT and MRI, Vol. 40, Issue 4 https://doi.org/10.1053/j.sult.2019.04.002	journal	August 2019
Transmission of Atherosclerosis Susceptibility with Gut Microbial Transplantation Gregory, Jill C.; Buffa, Jennifer A.; Org, Elin Journal of Biological Chemistry, Vol. 290, Issue 9 https://doi.org/10.1074/jbc.M114.618249	journal	December 2014
Immune mediator expression signatures are associated with improved outcome in ovarian carcinoma Nakamura, Mano; Bax, Heather J.; Scotto, Daniele OncoImmunology, Vol. 8, Issue 6 https://doi.org/10.1080/2162402X.2019.1593811	journal	March 2019
Prediction error estimation: a comparison of resampling methods Molinaro, A. M.; Simon, R.; Pfeiffer, R. M. Bioinformatics, Vol. 21, Issue 15 https://doi.org/10.1093/bioinformatics/bti499	journal	May 2005
Search and clustering orders of magnitude faster than BLAST Edgar, Robert C. Bioinformatics, Vol. 26, Issue 19, p. 2460-2461 https://doi.org/10.1093/bioinformatics/btq461	journal	August 2010
Stool Microbiota at Neutrophil Recovery Is Predictive for Severe Acute Graft vs Host Disease After Hematopoietic Cell Transplantation Golob, Jonathan L.; Pergam, Steven A.; Srinivasan, Sujatha Clinical Infectious Diseases, Vol. 65, Issue 12 https://doi.org/10.1093/cid/cix699	journal	August 2017
Distinct Microbiotas are Associated with Ileum-Restricted and Colon-Involving Crohnʼs Disease Naftali, Timna; Reshef, Leah; Kovacs, Amir Inflammatory Bowel Diseases, Vol. 22, Issue 2 https://doi.org/10.1097/MIB.0000000000000662	journal	January 2016
Galaxy: A platform for interactive large-scale genome analysis Giardine, B. Genome Research, Vol. 15, Issue 10 https://doi.org/10.1101/gr.4086505	journal	September 2005
The role of the vaginal microbiome in gynaecological cancer Champer, M.; Wong, Am; Champer, J. BJOG: An International Journal of Obstetrics & Gynaecology, Vol. 125, Issue 3 https://doi.org/10.1111/1471-0528.14631	journal	April 2017
Defining dysbiosis and its influence on host immunity and disease: How changes in microbiota structure influence health Petersen, Charisse; Round, June L. Cellular Microbiology, Vol. 16, Issue 7 https://doi.org/10.1111/cmi.12308	journal	June 2014
Regression shrinkage and selection via the lasso: a retrospective: Regression Shrinkage and Selection via the Lasso Tibshirani, Robert Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 73, Issue 3 https://doi.org/10.1111/j.1467-9868.2011.00771.x	journal	April 2011
Evaluation of the antimicrobial effect of lactoferrin on Porphyromonas gingivalis , Prevotella intermedia and Prevotella nigrescens Aguilera, O.; AndrÃ©s, M. T.; Heath, J. FEMS Immunology & Medical Microbiology, Vol. 21, Issue 1 https://doi.org/10.1111/j.1574-695X.1998.tb01146.x	journal	May 1998
Regression Shrinkage and Selection Via the Lasso Tibshirani, Robert Journal of the Royal Statistical Society: Series B (Methodological), Vol. 58, Issue 1 https://doi.org/10.1111/j.2517-6161.1996.tb02080.x	journal	January 1996
Case for a role of the microbiome in gynecologic cancers: Clinician's perspective: Role of the microbiome in gynecologic cancers Mert, Ismail; Walther-Antonio, Marina; Mariani, Andrea Journal of Obstetrics and Gynaecology Research, Vol. 44, Issue 9 https://doi.org/10.1111/jog.13701	journal	August 2018
Gut microbiome influences efficacy of PD-1–based immunotherapy against epithelial tumors Routy, Bertrand; Le Chatelier, Emmanuelle; Derosa, Lisa Science, Vol. 359, Issue 6371 https://doi.org/10.1126/science.aan3706	journal	November 2017
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis Machiels, Kathleen; Joossens, Marie; Sabino, João Gut, Vol. 63, Issue 8 https://doi.org/10.1136/gutjnl-2013-304833	journal	September 2013
Leveraging sequence-based faecal microbial community survey data to identify a composite biomarker for colorectal cancer Shah, Manasi S.; DeSantis, Todd Z.; Weinmaier, Thomas Gut, Vol. 67, Issue 5 https://doi.org/10.1136/gutjnl-2016-313189	journal	March 2017
Irritable bowel syndrome: a gut microbiota-related disorder? Bhattarai, Yogesh; Muniz Pedrogo, David A.; Kashyap, Purna C. American Journal of Physiology-Gastrointestinal and Liver Physiology, Vol. 312, Issue 1 https://doi.org/10.1152/ajpgi.00338.2016	journal	January 2017
Increased Systolic and Diastolic Blood Pressure Is Associated With Altered Gut Microbiota Composition and Butyrate Production in Early Pregnancy Gomez-Arango, Luisa F.; Barrett, Helen L.; McIntyre, H. David Hypertension, Vol. 68, Issue 4 https://doi.org/10.1161/HYPERTENSIONAHA.116.07910	journal	October 2016
Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups Gupta, Radhey S.; Mok, Amy BMC Microbiology, Vol. 7, Issue 1 https://doi.org/10.1186/1471-2180-7-106	journal	January 2007
HE4 tumor marker concentration in neoplastic peritoneal effusion and in peritoneal fluid associated with benign gynecological diseases Chudecka-Głaz, Anita; Cymbaluk-Płoska, Aneta; Menkiszak, Janusz Journal of Ovarian Research, Vol. 7, Issue 1 https://doi.org/10.1186/1757-2215-7-22	journal	January 2014
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome McDonald, Daniel; Clemente, Jose C.; Kuczynski, Justin GigaScience, Vol. 1, Issue 1 https://doi.org/10.1186/2047-217X-1-7	journal	July 2012
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences Goecks, Jeremy; Nekrutenko, Anton; Taylor, James Genome Biology, Vol. 11, Issue 8 https://doi.org/10.1186/gb-2010-11-8-r86	journal	January 2010
Influences of diet and the gut microbiome on epigenetic modulation in cancer and other diseases Paul, Bidisha; Barnes, Stephen; Demark-Wahnefried, Wendy Clinical Epigenetics, Vol. 7, Issue 1 https://doi.org/10.1186/s13148-015-0144-7	journal	October 2015
Measuring and testing dependence by correlation of distances Székely, Gábor J.; Rizzo, Maria L.; Bakirov, Nail K. The Annals of Statistics, Vol. 35, Issue 6 https://doi.org/10.1214/009053607000000505	journal	December 2007
On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other Mann, H. B.; Whitney, D. R. The Annals of Mathematical Statistics, Vol. 18, Issue 1 https://doi.org/10.1214/aoms/1177730491	journal	March 1947
Ovarian cancer screening—ultrasound; impact on ovarian cancer mortality Kamal, Rasha; Hamed, Soha; Mansour, Sahar The British Journal of Radiology, Vol. 91, Issue 1090 https://doi.org/10.1259/bjr.20170571	journal	October 2018
Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment Burns, Michael B.; Montassier, Emmanuel; Abrahante, Juan PLOS Genetics, Vol. 14, Issue 6 https://doi.org/10.1371/journal.pgen.1007376	journal	June 2018
The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes van Passel, Mark W. J.; Kant, Ravi; Zoetendal, Erwin G. PLoS ONE, Vol. 6, Issue 3 https://doi.org/10.1371/journal.pone.0016876	journal	March 2011
Comprehensive Serum Profiling for the Discovery of Epithelial Ovarian Cancer Biomarkers Yip, Ping; Chen, Tzong-Hao; Seshaiah, Partha PLoS ONE, Vol. 6, Issue 12 https://doi.org/10.1371/journal.pone.0029533	journal	December 2011
Systematic evaluation of supervised classifiers for fecal microbiota-based prediction of colorectal cancer Ai, Luoyan; Tian, Haiying; Chen, Zhaofei Oncotarget, Vol. 8, Issue 6 https://doi.org/10.18632/oncotarget.14488	journal	January 2017
Regularization Paths for Generalized Linear Models via Coordinate Descent Friedman, Jerome; Hastie, Trevor; Tibshirani, Robert Journal of Statistical Software, Vol. 33, Issue 1 https://doi.org/10.18637/jss.v033.i01	journal	January 2010
Sonographic detection of echogenic fluid and correlation with culdocentesis in the evaluation of ectopic pregnancy. Chen, P. C.; Sickler, G. K.; Dubinsky, T. J. American Journal of Roentgenology, Vol. 170, Issue 5 https://doi.org/10.2214/ajr.170.5.9574606	journal	May 1998
Unraveling a difficult diagnosis: the tricks for early recognition of ovarian cancer Giampaolino, Pierluigi; Della Corte, Luigi; Foreste, Virginia Minerva Medica, Vol. 110, Issue 4 https://doi.org/10.23736/S0026-4806.19.06086-5	journal	July 2019
The role of the microbiome in cancer development and therapy: Microbiome and Cancer Bhatt, Aadra P.; Redinbo, Matthew R.; Bultman, Scott J. CA: A Cancer Journal for Clinicians, Vol. 67, Issue 4 https://doi.org/10.3322/caac.21398	journal	May 2017
Insights into the Role of Erysipelotrichaceae in the Human Host Kaakoush, Nadeem O. Frontiers in Cellular and Infection Microbiology, Vol. 5 https://doi.org/10.3389/fcimb.2015.00084	journal	November 2015
A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction Zhou, Yi-Hui; Gallins, Paul Frontiers in Genetics, Vol. 10 https://doi.org/10.3389/fgene.2019.00579	journal	June 2019
Blowing on Embers: Commensal Microbiota and Our Immune System Spasova, Darina S.; Surh, Charles D. Frontiers in Immunology, Vol. 5 https://doi.org/10.3389/fimmu.2014.00318	journal	July 2014
The Intestinal Microbiome in Early Life: Health and Disease Arrieta, Marie-Claire; Stiemsma, Leah T.; Amenyogbe, Nelly Frontiers in Immunology, Vol. 5 https://doi.org/10.3389/fimmu.2014.00427	journal	September 2014
Anaerobes and Bacterial Vaginosis in Pregnancy: Virulence Factors Contributing to Vaginal Colonisation Africa, Charlene; Nel, Janske; Stemmet, Megan International Journal of Environmental Research and Public Health, Vol. 11, Issue 7 https://doi.org/10.3390/ijerph110706979	journal	July 2014
Mediterranean Diet and Health: Food Effects on Gut Microbiota and Disease Control Del Chierico, Federica; Vernocchi, Pamela; Dallapiccola, Bruno International Journal of Molecular Sciences, Vol. 15, Issue 7 https://doi.org/10.3390/ijms150711678	journal	July 2014
Immune System and DNA Repair Defects in Ovarian Cancer: Implications for Locoregional Approaches Farolfi, Alberto; Gurioli, Giorgia; Fugazzola, Paola International Journal of Molecular Sciences, Vol. 20, Issue 10 https://doi.org/10.3390/ijms20102569	journal	May 2019
Evaluation of ovarian cancer biomarkers HE4 and CA-125 in women presenting with a suspicious cystic ovarian mass Partheen, Karolina; Kristjansdottir, Björg; Sundfeldt, Karin Journal of Gynecologic Oncology, Vol. 22, Issue 4 https://doi.org/10.3802/jgo.2011.22.4.244	journal	January 2011
Complete genome sequence of Odoribacter splanchnicus type strain (1651/6T) Göker, Markus; Gronow, Sabine; Zeytun, Ahmet Standards in Genomic Sciences, Vol. 4, Issue 2 https://doi.org/10.4056/sigs.1714269	journal	April 2011
CA-125 concentration in serum and peritoneal fluid in patients with endometriosis – preliminary results Szubert, Maria; Suzin, Jacek; Wierzbowski, Tomasz Archives of Medical Science, Vol. 3 https://doi.org/10.5114/aoms.2012.29529	journal	January 2012
Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis Scher, Jose U.; Sczesnak, Andrew; Longman, Randy S. eLife, Vol. 2 https://doi.org/10.7554/eLife.01202	journal	November 2013

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