|
Design and Application of a Mevalonate-Responsive Regulatory Protein
|
journal
|
December 2010 |
|
Dynamic metabolic engineering: New strategies for developing responsive cell factories
|
journal
|
April 2015 |
|
Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
|
journal
|
October 2003 |
|
Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system
|
journal
|
March 2005 |
|
Engineering promoter regulation
|
journal
|
February 2007 |
|
Oxygen-responsive genetic circuits constructed in Synechocystis sp. PCC 6803 : Oxygen-Responsive Gene Circuits for
|
journal
|
September 2015 |
|
A note on the optimality criteria for maximum biomass production in a fed-batch fermentor
|
journal
|
October 1984 |
|
Communication to the editor. Application of the cross-regulation system as a metabolic switch
|
journal
|
May 1994 |
|
Enabling complex genetic circuits to respond to extrinsic environmental signals: Genetic Circuits to Sense Environmental Signals
|
journal
|
March 2017 |
|
Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli
|
journal
|
October 2017 |
|
Construction of a stress-induced system in Escherichia coli for efficient polyhydroxyalkanoates production
|
journal
|
March 2008 |
|
Construction of stress-induced metabolic pathway from glucose to 1,3-propanediol in Escherichia coli
|
journal
|
August 2010 |
|
Substrate gradient formation in the large-scale bioreactor lowers cell yield and increases by-product formation
|
journal
|
January 1998 |
|
Minimizing acetate formation in E. coli fermentations
|
journal
|
August 2007 |
|
Optimization of industrial microorganisms: recent advances in synthetic dynamic regulators
|
journal
|
November 2016 |
|
Large-scale bacterial fermentation and isolation of scFv multimers using a heat-inducible bacterial expression vector
|
journal
|
April 2002 |
|
Physiological responses to mixing in large scale bioreactors
|
journal
|
February 2001 |
|
A modular cell-based biosensor using engineered genetic logic circuits to detect and integrate multiple environmental signals
|
journal
|
February 2013 |
|
Development of biosensors and their application in metabolic engineering
|
journal
|
October 2015 |
|
Biofuel metabolic engineering with biosensors
|
journal
|
December 2016 |
|
A Synthetic Genetic Edge Detection Program
|
journal
|
June 2009 |
|
Engineering Static and Dynamic Control of Synthetic Pathways
|
journal
|
January 2010 |
|
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
|
journal
|
February 2013 |
|
Engineering Complex Synthetic Transcriptional Programs with CRISPR RNA Scaffolds
|
journal
|
January 2015 |
|
A Two-Layer Gene Circuit for Decoupling Cell Growth from Metabolite Production
|
journal
|
August 2016 |
|
Sensing the Right Time to Be Productive
|
journal
|
August 2016 |
|
Using metabolite-responsive gene regulators to improve microbial biosynthesis
|
journal
|
November 2016 |
|
Quorum sensing and bacterial cross-talk in biotechnology
|
journal
|
October 2004 |
|
Programmable genetic circuits for pathway engineering
|
journal
|
December 2015 |
|
The Incoherent Feed-forward Loop Accelerates the Response-time of the gal System of Escherichia coli
|
journal
|
March 2006 |
|
Construction of a Genetic Multiplexer to Toggle between Chemosensory Pathways in Escherichia coli
|
journal
|
February 2011 |
|
Sensing new chemicals with bacterial transcription factors
|
journal
|
October 2016 |
|
Engineering Controllable Protein Degradation
|
journal
|
June 2006 |
|
Catabolite activator protein: DNA binding and transcription activation
|
journal
|
February 2004 |
|
Overcoming acetate in Escherichia coli recombinant protein fermentations
|
journal
|
November 2006 |
|
Effect of oxygen, and ArcA and FNR regulators on the expression of genes related to the electron transfer chain and the TCA cycle in Escherichia coli
|
journal
|
September 2005 |
|
Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli
|
journal
|
May 2010 |
|
Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways
|
journal
|
May 2012 |
|
A dynamic metabolite valve for the control of central carbon metabolism
|
journal
|
November 2012 |
|
Metabolic flux redirection from a central metabolic pathway toward a synthetic pathway using a metabolic toggle switch
|
journal
|
May 2014 |
|
Sequential control of biosynthetic pathways for balanced utilization of metabolic intermediates in Saccharomyces cerevisiae
|
journal
|
March 2015 |
|
Dynamic knockdown of E. coli central metabolism for redirecting fluxes of primary metabolites
|
journal
|
March 2015 |
|
Autonomous production of 1,4-butanediol via a de novo biosynthesis pathway in engineered Escherichia coli
|
journal
|
May 2015 |
|
Application of CRISPRi for prokaryotic metabolic engineering involving multiple genes, a case study: Controllable P(3HB-co-4HB) biosynthesis
|
journal
|
May 2015 |
|
Self-induced metabolic state switching by a tunable cell density sensor for microbial isopropanol production
|
journal
|
July 2015 |
|
Applications and advances of metabolite biosensors for metabolic engineering
|
journal
|
September 2015 |
|
Transcriptional feedback regulation of efflux protein expression for increased tolerance to and production of n-butanol
|
journal
|
January 2016 |
|
Systematic testing of enzyme perturbation sensitivities via graded dCas9 modulation in Saccharomyces cerevisiae
|
journal
|
March 2017 |
|
Iterative algorithm-guided design of massive strain libraries, applied to itaconic acid production in yeast
|
journal
|
July 2018 |
|
Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability
|
journal
|
July 2015 |
|
Autoinduced AND Gate Controls Metabolic Pathway Dynamically in Response to Microbial Communities and Cell Physiological State
|
journal
|
November 2016 |
|
A Glucose-Sensing Toggle Switch for Autonomous, High Productivity Genetic Control
|
journal
|
March 2017 |
|
Positive Feedback Genetic Circuit Incorporating a Constitutively Active Mutant Gal3 into Yeast GAL Induction System
|
journal
|
March 2017 |
|
Fundamental Design Principles for Transcription-Factor-Based Metabolite Biosensors
|
journal
|
August 2017 |
|
Design and Selection of a Synthetic Feedback Loop for Optimizing Biofuel Tolerance
|
journal
|
August 2017 |
|
Development of Transcription Factor-Based Designer Macrolide Biosensors for Metabolic Engineering and Synthetic Biology
|
journal
|
August 2017 |
|
Engineering 1-Alkene Biosynthesis and Secretion by Dynamic Regulation in Yeast
|
journal
|
January 2018 |
|
Metabolic Feedback Circuits Provide Rapid Control of Metabolite Dynamics
|
journal
|
January 2018 |
|
Differential Gene Expression Profiles and Real-Time Measurements of Growth Parameters in Saccharomyces cerevisiae Grown in Microliter-Scale Bioreactors Equipped with Internal Stirring
|
journal
|
June 2006 |
|
Genetic Circuit Performance under Conditions Relevant for Industrial Bioreactors
|
journal
|
November 2012 |
|
Analysis and Design of a Genetic Circuit for Dynamic Metabolic Engineering
|
journal
|
January 2013 |
|
Genetic Sensor for Strong Methylating Compounds
|
journal
|
June 2013 |
|
SoxR as a Single-Cell Biosensor for NADPH-Consuming Enzymes in Escherichia coli
|
journal
|
December 2013 |
|
Trade-offs in Engineering Sugar Utilization Pathways for Titratable Control
|
journal
|
April 2014 |
|
Direct Mutagenesis of Thousands of Genomic Targets Using Microarray-Derived Oligonucleotides
|
journal
|
June 2014 |
|
Systematic Transfer of Prokaryotic Sensors and Circuits to Mammalian Cells
|
journal
|
February 2014 |
|
Genome shuffling leads to rapid phenotypic improvement in bacteria
|
journal
|
February 2002 |
|
Improving lycopene production in Escherichia coli by engineering metabolic control
|
journal
|
May 2000 |
|
Environmental signal integration by a modular AND gate
|
journal
|
August 2007 |
|
Programming gene expression with combinatorial promoters
|
journal
|
January 2007 |
|
Programmed population control by cell–cell communication and regulated killing
|
journal
|
April 2004 |
|
Metabolic gene regulation in a dynamically changing environment
|
journal
|
July 2008 |
|
Genetic programs constructed from layered logic gates in single cells
|
journal
|
October 2012 |
|
Complex cellular logic computation using ribocomputing devices
|
journal
|
July 2017 |
|
Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips
|
journal
|
November 2010 |
|
Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
|
journal
|
March 2012 |
|
Ribozyme-based insulator parts buffer synthetic circuits from genetic context
|
journal
|
October 2012 |
|
Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
|
journal
|
January 2013 |
|
Engineering dynamic pathway regulation using stress-response promoters
|
journal
|
October 2013 |
|
Tunable protein degradation in bacteria
|
journal
|
November 2014 |
|
Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit
|
journal
|
February 2017 |
|
Genomic mining of prokaryotic repressors for orthogonal logic gates
|
journal
|
December 2013 |
|
'Deadman' and 'Passcode' microbial kill switches for bacterial containment
|
journal
|
December 2015 |
|
Engineering RGB color vision into Escherichia coli
|
journal
|
May 2017 |
|
Control of type III protein secretion using a minimal genetic system
|
journal
|
May 2017 |
|
Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology
|
journal
|
September 2011 |
|
Targeted DNA degradation using a CRISPR device stably carried in the host genome
|
journal
|
May 2015 |
|
Just-in-time transcription program in metabolic pathways
|
journal
|
April 2004 |
|
Network motifs in the transcriptional regulation network of Escherichia coli
|
journal
|
April 2002 |
|
Precise and reliable gene expression via standard transcription and translation initiation elements
|
journal
|
March 2013 |
|
Characterization of 582 natural and synthetic terminators and quantification of their design constraints
|
journal
|
June 2013 |
|
Principles of genetic circuit design
|
journal
|
April 2014 |
|
Burden-driven feedback control of gene expression
|
journal
|
March 2018 |
|
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
|
journal
|
August 2011 |
|
Foundations for the design and implementation of synthetic genetic circuits
|
journal
|
May 2012 |
|
Genome-scale models of microbial cells: evaluating the consequences of constraints
|
journal
|
November 2004 |
|
Molecular aspects of bacterial pH sensing and homeostasis
|
journal
|
April 2011 |
|
Genetic regulation of biological nitrogen fixation
|
journal
|
August 2004 |
|
Engineering a riboswitch-based genetic platform for the self-directed evolution of acid-tolerant phenotypes
|
journal
|
September 2017 |
|
Phosphatase activity tunes two-component system sensor detection threshold
|
journal
|
April 2018 |
|
Biosensor libraries harness large classes of binding domains for construction of allosteric transcriptional regulators
|
journal
|
August 2018 |
|
A novel programmable lysozyme-based lysis system in Pseudomonas putida for biopolymer production
|
journal
|
June 2017 |
|
Enhancing flavonoid production by systematically tuning the central metabolic pathways based on a CRISPR interference system in Escherichia coli
|
journal
|
September 2015 |
|
Design of artificial cell-cell communication using gene and metabolic networks
|
journal
|
February 2004 |
|
Programmable cells: Interfacing natural and engineered gene networks
|
journal
|
May 2004 |
|
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade
|
journal
|
February 2005 |
|
Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation
|
journal
|
April 2007 |
|
Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli
|
journal
|
November 2008 |
|
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
|
journal
|
May 2000 |
|
Functioning of a metabolic flux sensor in Escherichia coli
|
journal
|
December 2012 |
|
Genetic switchboard for synthetic biology applications
|
journal
|
March 2012 |
|
Composability of regulatory sequences controlling transcription and translation in Escherichia coli
|
journal
|
August 2013 |
|
Improving fatty acids production by engineering dynamic pathway regulation and metabolic control
|
journal
|
July 2014 |
|
Genetically encoded sensors enable real-time observation of metabolite production
|
journal
|
February 2016 |
|
A Reassessment of the FNR Regulon and Transcriptomic Analysis of the Effects of Nitrate, Nitrite, NarXL, and NarQP as Escherichia coli K12 Adapts from Aerobic to Anaerobic Growth
|
journal
|
December 2005 |
|
Fast and accurate short read alignment with Burrows-Wheeler transform
|
journal
|
May 2009 |
|
A novel sensor of NADH/NAD+ redox poise in Streptomyces coelicolor A3(2)
|
journal
|
September 2003 |
|
Engineering tolerance to industrially relevant stress factors in yeast cell factories
|
journal
|
June 2017 |
|
Modular control of multiple pathways using engineered orthogonal T7 polymerases
|
journal
|
June 2012 |
|
Amplification of small molecule-inducible gene expression via tuning of intracellular receptor densities
|
journal
|
January 2015 |
|
Synthetic biosensors for precise gene control and real-time monitoring of metabolites
|
journal
|
July 2015 |
|
A predictive biophysical model of translational coupling to coordinate and control protein expression in bacterial operons
|
journal
|
June 2015 |
|
Post-translational control of genetic circuits using Potyvirus proteases
|
journal
|
June 2016 |
|
Engineering of synthetic, stress-responsive yeast promoters
|
journal
|
June 2016 |
|
Balancing gene expression without library construction via a reusable sRNA pool
|
journal
|
June 2017 |
|
Synthetic gene circuits for metabolic control: design trade-offs and constraints
|
journal
|
January 2013 |
|
Crystallization and preliminary X-ray diffraction analysis of full-length and proteolytically activated pyruvate oxidase from Escherichia coli
|
journal
|
February 2008 |
|
Expression of Escherichia coli pyruvate oxidase (PoxB) depends on the sigma factor encoded by the rpoS(katF) gene
|
journal
|
March 1994 |
|
Functional dissection of Escherichia coli phosphotransacetylase structural domains and analysis of key compounds involved in activity regulation: Escherichia coli phosphotransacetylase
|
journal
|
March 2010 |
|
Stochastic Gene Expression in a Single Cell
|
journal
|
August 2002 |
|
RNAi in Budding Yeast
|
journal
|
September 2009 |
|
In vivo half-life of a protein is a function of its amino-terminal residue
|
journal
|
October 1986 |
|
Genetic circuit design automation
|
journal
|
March 2016 |
|
Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: S-Dependent Genes, Promoters, and Sigma Factor Selectivity
|
journal
|
February 2005 |
|
The Acetate Switch
|
journal
|
March 2005 |
|
The catabolite repressor/activator (Cra) protein of enteric bacteria.
|
journal
|
June 1996 |
|
The N-End Rule Pathway
|
journal
|
July 2012 |
|
Microbial nar-GFP cell sensors reveal oxygen limitations in highly agitated and aerated laboratory-scale fermentors
|
journal
|
January 2009 |
|
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
|
journal
|
January 2014 |
|
Engineering BioBrick vectors from BioBrick parts
|
journal
|
January 2008 |
|
Measuring the activity of BioBrick promoters using an in vivo reference standard
|
journal
|
January 2009 |
|
Designing and engineering evolutionary robust genetic circuits
|
journal
|
January 2010 |
|
A scaling normalization method for differential expression analysis of RNA-seq data
|
journal
|
March 2010 |
|
Dynamic control of ERG9 expression for improved amorpha-4,11-diene production in Saccharomyces cerevisiae
|
journal
|
March 2015 |
|
Development of an efficient autoinducible expression system by promoter engineering in Bacillus subtilis
|
journal
|
April 2016 |
|
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints
|
journal
|
April 2017 |
|
Synthetic Transcription Amplifier System for Orthogonal Control of Gene Expression in Saccharomyces cerevisiae
|
journal
|
February 2016 |
|
A ‘resource allocator’ for transcription based on a highly fragmented T7 RNA polymerase
|
journal
|
July 2014 |
|
A synthetic growth switch based on controlled expression of RNA polymerase
|
journal
|
November 2015 |
|
Genetic circuit characterization and debugging using RNA ‐seq
|
journal
|
November 2017 |
|
FapR: From Control of Membrane Lipid Homeostasis to a Biotechnological Tool
|
journal
|
October 2016 |
|
Fast track assembly of multigene constructs using Golden Gate cloning and the MoClo system
|
journal
|
January 2012 |