skip to main content
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14

Abstract

Biological Mn(II) oxidation produces reactive manganese oxides that help to mitigate metal contamination in the environment. Here, we present the genome ofOxalobacteraceae sp. strain AB_14, a species of Mn(II)-oxidizing bacteria (MOB) that is notable for its ability to catalyze Mn oxidation at low pH (5.5).

Authors:
ORCiD logo [1]; ORCiD logo [1];  [2];  [3];  [4];  [4];  [5]; ORCiD logo [6];  [7]
  1. U.S. Geological Survey, Reston, VA (United States)
  2. Commonwealth Scientific and Industrial Research Organization (CSIRO), Kensington, WA (Australia)
  3. Friedrich Schiller Univ., Jena (Germany). Inst. for Microbiology
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); St. Petersburg State Univ., St. Petersburg (Russia)
  6. Newcastle Univ., Newcastle upon Tyne (United Kingdom)
  7. Friedrich Schiller Univ., Jena (Germany). Inst. of Biodiversity
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC); Russian Science Foundation
OSTI Identifier:
1580956
Grant/Contract Number:  
AC02-05CH11231; 19-16-00049
Resource Type:
Accepted Manuscript
Journal Name:
Microbiology Resource Announcements
Additional Journal Information:
Journal Volume: 8; Journal Issue: 43; Journal ID: ISSN 2576-098X
Publisher:
SSPA - American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Bushman, Timothy J., Akob, Denise M., Bohu, Tsing, Beyer, Andrea, Woyke, Tanja, Shapiro, Nicole, Lapidus, Alla, Klenk, Hans-Peter, and Küsel, Kirsten. Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14. United States: N. p., 2019. Web. https://doi.org/10.1128/MRA.01024-19.
Bushman, Timothy J., Akob, Denise M., Bohu, Tsing, Beyer, Andrea, Woyke, Tanja, Shapiro, Nicole, Lapidus, Alla, Klenk, Hans-Peter, & Küsel, Kirsten. Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14. United States. https://doi.org/10.1128/MRA.01024-19
Bushman, Timothy J., Akob, Denise M., Bohu, Tsing, Beyer, Andrea, Woyke, Tanja, Shapiro, Nicole, Lapidus, Alla, Klenk, Hans-Peter, and Küsel, Kirsten. Thu . "Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14". United States. https://doi.org/10.1128/MRA.01024-19. https://www.osti.gov/servlets/purl/1580956.
@article{osti_1580956,
title = {Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14},
author = {Bushman, Timothy J. and Akob, Denise M. and Bohu, Tsing and Beyer, Andrea and Woyke, Tanja and Shapiro, Nicole and Lapidus, Alla and Klenk, Hans-Peter and Küsel, Kirsten},
abstractNote = {Biological Mn(II) oxidation produces reactive manganese oxides that help to mitigate metal contamination in the environment. Here, we present the genome ofOxalobacteraceae sp. strain AB_14, a species of Mn(II)-oxidizing bacteria (MOB) that is notable for its ability to catalyze Mn oxidation at low pH (5.5).},
doi = {10.1128/MRA.01024-19},
journal = {Microbiology Resource Announcements},
number = 43,
volume = 8,
place = {United States},
year = {2019},
month = {10}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Save / Share:

Works referenced in this record:

Geomicrobiology of manganese(II) oxidation
journal, September 2005

  • Tebo, Bradley M.; Johnson, Hope A.; McCarthy, James K.
  • Trends in Microbiology, Vol. 13, Issue 9
  • DOI: 10.1016/j.tim.2005.07.009

Identification of Mn(II)-Oxidizing Bacteria from a Low-pH Contaminated Former Uranium Mine
journal, June 2014

  • Akob, Denise M.; Bohu, Tsing; Beyer, Andrea
  • Applied and Environmental Microbiology, Vol. 80, Issue 16
  • DOI: 10.1128/AEM.01296-14

Biological Low-pH Mn(II) Oxidation in a Manganese Deposit Influenced by Metal-Rich Groundwater
journal, March 2016

  • Bohu, Tsing; Akob, Denise M.; Abratis, Michael
  • Applied and Environmental Microbiology, Vol. 82, Issue 10
  • DOI: 10.1128/AEM.03844-15

Investigations on theSphaerotilus-Leptothrix group
journal, December 1963

  • Mulder, E. G.; van Veen, W. L.
  • Antonie van Leeuwenhoek, Vol. 29, Issue 1
  • DOI: 10.1007/BF02046045

Real-Time DNA Sequencing from Single Polymerase Molecules
journal, January 2009


High-quality draft assemblies of mammalian genomes from massively parallel sequence data
journal, December 2010

  • Gnerre, S.; MacCallum, I.; Przybylski, D.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
  • DOI: 10.1073/pnas.1017351108

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
journal, October 2018

  • Chen, I-Min A.; Chu, Ken; Palaniappan, Krishna
  • Nucleic Acids Research, Vol. 47, Issue D1
  • DOI: 10.1093/nar/gky901

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010

  • Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
  • Nature Methods, Vol. 7, Issue 6
  • DOI: 10.1038/nmeth.1457