Mechanistic Modeling of Microtopographic Impacts on CO2 and CH4 Fluxes in an Alaskan Tundra Ecosystem Using the CLM-Microbe Model
Abstract
Spatial heterogeneities in soil hydrology have been confirmed as a key control on CO2 and CH4 fluxes in the Arctic tundra ecosystem. In this study, we applied a mechanistic ecosystem model, CLM-Microbe, to examine the microtopographic impacts on CO2 and CH4 fluxes across seven landscape types in Utqiaġvik, Alaska: trough, low-centered polygon (LCP) center, LCP transition, LCP rim, high-centered polygon (HCP) center, HCP transition, and HCP rim. We first validated the CLM-Microbe model against static-chamber measured CO2 and CH4 fluxes in 2013 for three landscape types: trough, LCP center, and LCP rim. Model application showed that low-elevation and thus wetter landscape types (i.e., trough, transitions, and LCP center) had larger CH4 emissions rates with greater seasonal variations than high-elevation and drier landscape types (rims and HCP center). Sensitivity analysis indicated that substrate availability for methanogenesis (acetate, CO2 + H2) is the most important factor determining CH4 emission, and vegetation physiological properties largely affect the net ecosystem carbon exchange and ecosystem respiration in Arctic tundra ecosystems. Modeled CH4 emissions for different microtopographic features were upscaled to the eddy covariance (EC) domain with an area-weighted approach before validation against EC-measured CH4 fluxes. The model underestimated the EC-measured CH4 flux by 20% and 25% atmore »
- Authors:
-
- Department of BiologySan Diego State University San Diego CA USA
- Environmental Sciences DivisionOak Ridge National Laboratory Oak Ridge TN USA
- Department of BiologySan Diego State University San Diego CA USA, Institute of Applied EcologyChinese Academy of Sciences Shenyang City China
- Civil and Environmental EngineeringUniversity of California, Berkeley Berkeley CA USA
- Earth Sciences DivisionLawrence Berkeley National Laboratory Berkeley CA USA
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
- OSTI Identifier:
- 1579403
- Alternate Identifier(s):
- OSTI ID: 1579405; OSTI ID: 1582360; OSTI ID: 1615822
- Grant/Contract Number:
- AC05-00OR22725; AC02-05CH11231; 1702797
- Resource Type:
- Published Article
- Journal Name:
- Journal of Advances in Modeling Earth Systems
- Additional Journal Information:
- Journal Name: Journal of Advances in Modeling Earth Systems Journal Volume: 11 Journal Issue: 12; Journal ID: ISSN 1942-2466
- Publisher:
- American Geophysical Union (AGU)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; Arctic tundra; CH4 flux; microtopographic; sensitivity analysis; net carbon exchange
Citation Formats
Wang, Yihui, Yuan, Fengming, Yuan, Fenghui, Gu, Baohua, Hahn, Melanie S., Torn, Margaret S., Ricciuto, Daniel M., Kumar, Jitendra, He, Liyuan, Zona, Donatella, Lipson, David A., Wagner, Robert, Oechel, Walter C., Wullschleger, Stan D., Thornton, Peter E., and Xu, Xiaofeng. Mechanistic Modeling of Microtopographic Impacts on CO2 and CH4 Fluxes in an Alaskan Tundra Ecosystem Using the CLM-Microbe Model. United States: N. p., 2019.
Web. doi:10.1029/2019MS001771.
Wang, Yihui, Yuan, Fengming, Yuan, Fenghui, Gu, Baohua, Hahn, Melanie S., Torn, Margaret S., Ricciuto, Daniel M., Kumar, Jitendra, He, Liyuan, Zona, Donatella, Lipson, David A., Wagner, Robert, Oechel, Walter C., Wullschleger, Stan D., Thornton, Peter E., & Xu, Xiaofeng. Mechanistic Modeling of Microtopographic Impacts on CO2 and CH4 Fluxes in an Alaskan Tundra Ecosystem Using the CLM-Microbe Model. United States. https://doi.org/10.1029/2019MS001771
Wang, Yihui, Yuan, Fengming, Yuan, Fenghui, Gu, Baohua, Hahn, Melanie S., Torn, Margaret S., Ricciuto, Daniel M., Kumar, Jitendra, He, Liyuan, Zona, Donatella, Lipson, David A., Wagner, Robert, Oechel, Walter C., Wullschleger, Stan D., Thornton, Peter E., and Xu, Xiaofeng. Thu .
"Mechanistic Modeling of Microtopographic Impacts on CO2 and CH4 Fluxes in an Alaskan Tundra Ecosystem Using the CLM-Microbe Model". United States. https://doi.org/10.1029/2019MS001771.
@article{osti_1579403,
title = {Mechanistic Modeling of Microtopographic Impacts on CO2 and CH4 Fluxes in an Alaskan Tundra Ecosystem Using the CLM-Microbe Model},
author = {Wang, Yihui and Yuan, Fengming and Yuan, Fenghui and Gu, Baohua and Hahn, Melanie S. and Torn, Margaret S. and Ricciuto, Daniel M. and Kumar, Jitendra and He, Liyuan and Zona, Donatella and Lipson, David A. and Wagner, Robert and Oechel, Walter C. and Wullschleger, Stan D. and Thornton, Peter E. and Xu, Xiaofeng},
abstractNote = {Spatial heterogeneities in soil hydrology have been confirmed as a key control on CO2 and CH4 fluxes in the Arctic tundra ecosystem. In this study, we applied a mechanistic ecosystem model, CLM-Microbe, to examine the microtopographic impacts on CO2 and CH4 fluxes across seven landscape types in Utqiaġvik, Alaska: trough, low-centered polygon (LCP) center, LCP transition, LCP rim, high-centered polygon (HCP) center, HCP transition, and HCP rim. We first validated the CLM-Microbe model against static-chamber measured CO2 and CH4 fluxes in 2013 for three landscape types: trough, LCP center, and LCP rim. Model application showed that low-elevation and thus wetter landscape types (i.e., trough, transitions, and LCP center) had larger CH4 emissions rates with greater seasonal variations than high-elevation and drier landscape types (rims and HCP center). Sensitivity analysis indicated that substrate availability for methanogenesis (acetate, CO2 + H2) is the most important factor determining CH4 emission, and vegetation physiological properties largely affect the net ecosystem carbon exchange and ecosystem respiration in Arctic tundra ecosystems. Modeled CH4 emissions for different microtopographic features were upscaled to the eddy covariance (EC) domain with an area-weighted approach before validation against EC-measured CH4 fluxes. The model underestimated the EC-measured CH4 flux by 20% and 25% at daily and hourly time steps, suggesting the importance of the time step in reporting CH4 flux. The strong microtopographic impacts on CO2 and CH4 fluxes call for a model-data integration framework for better understanding and predicting carbon flux in the highly heterogeneous Arctic landscape.},
doi = {10.1029/2019MS001771},
journal = {Journal of Advances in Modeling Earth Systems},
number = 12,
volume = 11,
place = {United States},
year = {2019},
month = {12}
}
https://doi.org/10.1029/2019MS001771
Web of Science
Works referenced in this record:
Responses of CO 2 flux components of Alaskan Coastal Plain tundra to shifts in water table
journal, January 2010
- Olivas, Paulo C.; Oberbauer, Steven F.; Tweedie, Craig E.
- Journal of Geophysical Research, Vol. 115
Spatial variation in landscape-level CO 2 and CH 4 fluxes from arctic coastal tundra: influence from vegetation, wetness, and the thaw lake cycle
journal, July 2013
- Sturtevant, Cove S.; Oechel, Walter C.
- Global Change Biology, Vol. 19, Issue 9
Microtopographic control on the ground thermal regime in ice wedge polygons
journal, January 2018
- Abolt, Charles J.; Young, Michael H.; Atchley, Adam L.
- The Cryosphere, Vol. 12, Issue 6
Mapping pan-Arctic methane emissions at high spatial resolution using an adjoint atmospheric transport and inversion method and process-based wetland and lake biogeochemical models
journal, January 2015
- Tan, Z.; Zhuang, Q.; Henze, D. K.
- Atmospheric Chemistry and Physics Discussions, Vol. 15, Issue 22
Mapping Arctic Plant Functional Type Distributions in the Barrow Environmental Observatory Using WorldView-2 and LiDAR Datasets
journal, September 2016
- Langford, Zachary; Kumar, Jitendra; Hoffman, Forrest
- Remote Sensing, Vol. 8, Issue 9
Influence of carbon-nitrogen cycle coupling on land model response to CO 2 fertilization and climate variability : INFLUENCE OF CARBON-NITROGEN COUPLING
journal, December 2007
- Thornton, Peter E.; Lamarque, Jean-François; Rosenbloom, Nan A.
- Global Biogeochemical Cycles, Vol. 21, Issue 4
Net regional methane sink in High Arctic soils of northeast Greenland
journal, December 2014
- Juncher Jørgensen, Christian; Lund Johansen, Katrine Maria; Westergaard-Nielsen, Andreas
- Nature Geoscience, Vol. 8, Issue 1
Impacts of microtopographic snow redistribution and lateral subsurface processes on hydrologic and thermal states in an Arctic polygonal ground ecosystem: a case study using ELM-3D v1.0
journal, January 2018
- Bisht, Gautam; Riley, William J.; Wainwright, Haruko M.
- Geoscientific Model Development, Vol. 11, Issue 1
Morphometric and spatial analysis of thaw lakes and drained thaw lake basins in the western Arctic Coastal Plain, Alaska
journal, January 2005
- Hinkel, K. M.; Frohn, R. C.; Nelson, F. E.
- Permafrost and Periglacial Processes, Vol. 16, Issue 4
Mechanistic modeling of microbial interactions at pore to profile scale resolve methane emission dynamics from permafrost soil: MICROBIAL INTERACTIONS IN PERMAFROST
journal, May 2017
- Ebrahimi, Ali; Or, Dani
- Journal of Geophysical Research: Biogeosciences, Vol. 122, Issue 5
Long-Term Drainage Reduces CO 2 Uptake and CH 4 Emissions in a Siberian Permafrost Ecosystem : Drainage impact on Arctic carbon cycle
journal, December 2017
- Kittler, Fanny; Heimann, Martin; Kolle, Olaf
- Global Biogeochemical Cycles, Vol. 31, Issue 12
Tundra ecosystems observed to be CO 2 sources due to differential amplification of the carbon cycle
journal, August 2013
- Belshe, E. F.; Schuur, E. A. G.; Bolker, B. M.
- Ecology Letters, Vol. 16, Issue 10
Methane emission from Siberian arctic polygonal tundra: eddy covariance measurements and modeling
journal, June 2008
- Wille, Christian; Kutzbach, Lars; Sachs, Torsten
- Global Change Biology, Vol. 14, Issue 6
A scalable model for methane consumption in arctic mineral soils
journal, May 2016
- Oh, Youmi; Stackhouse, Brandon; Lau, Maggie C. Y.
- Geophysical Research Letters, Vol. 43, Issue 10
Influences and interactions of inundation, peat, and snow on active layer thickness
journal, May 2016
- Atchley, Adam L.; Coon, Ethan T.; Painter, Scott L.
- Geophysical Research Letters, Vol. 43, Issue 10
Comparison of chamber and eddy covariance-based CO2 and CH4 emission estimates in a heterogeneous grass ecosystem on peat
journal, June 2010
- Schrier-Uijl, A. P.; Kroon, P. S.; Hensen, A.
- Agricultural and Forest Meteorology, Vol. 150, Issue 6
A satellite data driven biophysical modeling approach for estimating northern peatland and tundra CO 2 and CH 4 fluxes
journal, January 2014
- Watts, J. D.; Kimball, J. S.; Parmentier, F. J. W.
- Biogeosciences, Vol. 11, Issue 7
Methane production as a function of anaerobic carbon mineralization: A process model
journal, August 1998
- Segers, R.; Kengen, S. W. M.
- Soil Biology and Biochemistry, Vol. 30, Issue 8-9
Process-based modelling of the methane balance in periglacial landscapes (JSBACH-methane)
journal, January 2017
- Kaiser, Sonja; Göckede, Mathias; Castro-Morales, Karel
- Geoscientific Model Development, Vol. 10, Issue 1
Vegetation Type Dominates the Spatial Variability in CH4 Emissions Across Multiple Arctic Tundra Landscapes
journal, May 2016
- Davidson, Scott J.; Sloan, Victoria L.; Phoenix, Gareth K.
- Ecosystems, Vol. 19, Issue 6
Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska: BIOGEOCHEMISTRY OF ANOXIC ARCTIC TUNDRA
journal, November 2015
- Herndon, Elizabeth M.; Mann, Benjamin F.; Roy Chowdhury, Taniya
- Journal of Geophysical Research: Biogeosciences, Vol. 120, Issue 11
Modeling methane emissions from the Alaskan Yukon River basin, 1986-2005, by coupling a large-scale hydrological model and a process-based methane model: CH
journal, April 2012
- Lu, Xiaoliang; Zhuang, Qianlai
- Journal of Geophysical Research: Biogeosciences, Vol. 117, Issue G2
Microtopographic and depth controls on active layer chemistry in Arctic polygonal ground: Polygonal Ground Chemistry
journal, March 2015
- Newman, B. D.; Throckmorton, H. M.; Graham, D. E.
- Geophysical Research Letters, Vol. 42, Issue 6
Variation in the plant-mediated methane transport and its importance for methane emission from intact wetland peat mesocosms
journal, January 2013
- Bhullar, G. S.; Edwards, P. J.; Olde Venterink, H.
- Journal of Plant Ecology, Vol. 6, Issue 4
Simulation of methanogenesis in the mathematical model ecosys
journal, July 1998
- Grant, R. F.
- Soil Biology and Biochemistry, Vol. 30, Issue 7
Mathematical Modelling of Arctic Polygonal Tundra with Ecosys: 2. Microtopography Determines How CO 2 and CH 4 Exchange Responds to Changes in Temperature and Precipitation : GHG Exchange in Arctic Polygonal Tundra
journal, December 2017
- Grant, R. F.; Mekonnen, Z. A.; Riley, W. J.
- Journal of Geophysical Research: Biogeosciences, Vol. 122, Issue 12
A microbial functional group-based module for simulating methane production and consumption: Application to an incubated permafrost soil: A MICROBIAL FUNCTIONAL GROUP-BASED METHANE MODULE
journal, July 2015
- Xu, Xiaofeng; Elias, Dwayne A.; Graham, David E.
- Journal of Geophysical Research: Biogeosciences, Vol. 120, Issue 7
Mathematical Modelling of Arctic Polygonal Tundra with Ecosys : 1. Microtopography Determines How Active Layer Depths Respond to Changes in Temperature and Precipitation : Active Layer Depth in Polygonal Tundra
journal, December 2017
- Grant, R. F.; Mekonnen, Z. A.; Riley, W. J.
- Journal of Geophysical Research: Biogeosciences, Vol. 122, Issue 12
Microbial community structure and soil p H correspond to methane production in A rctic A laska soils
journal, July 2017
- Wagner, Robert; Zona, Donatella; Oechel, Walter
- Environmental Microbiology, Vol. 19, Issue 8
Mapping snow depth within a tundra ecosystem using multiscale observations and Bayesian methods
journal, January 2017
- Wainwright, Haruko M.; Liljedahl, Anna K.; Dafflon, Baptiste
- The Cryosphere, Vol. 11, Issue 2
Recent change of Arctic tundra ecosystems from a net carbon dioxide sink to a source
journal, February 1993
- Oechel, Walter C.; Hastings, Steven J.; Vourlrtis, George
- Nature, Vol. 361, Issue 6412
Permafrost collapse after shrub removal shifts tundra ecosystem to a methane source
journal, November 2014
- Nauta, Ake L.; Heijmans, Monique M. P. D.; Blok, Daan
- Nature Climate Change, Vol. 5, Issue 1
Deeper snow alters soil nutrient availability and leaf nutrient status in high Arctic tundra
journal, February 2015
- Semenchuk, Philipp R.; Elberling, Bo; Amtorp, Cecilie
- Biogeochemistry, Vol. 124, Issue 1-3
Controls on soil methane fluxes: Tests of biophysical mechanisms using stable isotope tracers: BIOPHYSICAL CONTROL OF SOIL METHANE FLUX
journal, May 2007
- von Fischer, Joseph C.; Hedin, Lars O.
- Global Biogeochemical Cycles, Vol. 21, Issue 2
A process-based, climate-sensitive model to derive methane emissions from natural wetlands: Application to five wetland sites, sensitivity to model parameters, and climate
journal, September 2000
- Walter, Bernadette P.; Heimann, Martin
- Global Biogeochemical Cycles, Vol. 14, Issue 3
Methane fluxes between terrestrial ecosystems and the atmosphere at northern high latitudes during the past century: A retrospective analysis with a process-based biogeochemistry model: METHANE EMISSIONS FROM NORTHERN HIGH LATITUDES
journal, August 2004
- Zhuang, Q.; Melillo, J. M.; Kicklighter, D. W.
- Global Biogeochemical Cycles, Vol. 18, Issue 3
Cold season emissions dominate the Arctic tundra methane budget
journal, December 2015
- Zona, Donatella; Gioli, Beniamino; Commane, Róisín
- Proceedings of the National Academy of Sciences, Vol. 113, Issue 1
Landscape topography structures the soil microbiome in arctic polygonal tundra
journal, February 2018
- Taş, Neslihan; Prestat, Emmanuel; Wang, Shi
- Nature Communications, Vol. 9, Issue 1
Modeling the spatiotemporal variability in subsurface thermal regimes across a low-relief polygonal tundra landscape
journal, January 2016
- Kumar, Jitendra; Collier, Nathan; Bisht, Gautam
- The Cryosphere, Vol. 10, Issue 5
Spatial and temporal patterns of CH 4 and N 2 O fluxes in terrestrial ecosystems of North America during 1979–2008: application of a global biogeochemistry model
journal, January 2010
- Tian, H.; Xu, X.; Liu, M.
- Biogeosciences, Vol. 7, Issue 9
Geochemical drivers of organic matter decomposition in arctic tundra soils
journal, December 2015
- Herndon, Elizabeth M.; Yang, Ziming; Bargar, John
- Biogeochemistry, Vol. 126, Issue 3
Water-table height and microtopography control biogeochemical cycling in an Arctic coastal tundra ecosystem
journal, January 2012
- Lipson, D. A.; Zona, D.; Raab, T. K.
- Biogeosciences, Vol. 9, Issue 1
Attribution of spatial and temporal variations in terrestrial methane flux over North America
journal, January 2010
- Xu, X. F.; Tian, H. Q.; Zhang, C.
- Biogeosciences, Vol. 7, Issue 11
Pathways and transformations of dissolved methane and dissolved inorganic carbon in Arctic tundra watersheds: Evidence from analysis of stable isotopes: DISSOLVED CH
journal, November 2015
- Throckmorton, Heather M.; Heikoop, Jeffrey M.; Newman, Brent D.
- Global Biogeochemical Cycles, Vol. 29, Issue 11
The contribution of Fe(III) and humic acid reduction to ecosystem respiration in drained thaw lake basins of the Arctic Coastal Plain: Fe(III) AND HA REDUCTION IN THE ARCTIC
journal, May 2013
- Lipson, David A.; Raab, Theodore K.; Goria, Dominic
- Global Biogeochemical Cycles, Vol. 27, Issue 2
Barriers to predicting changes in global terrestrial methane fluxes: analyses using CLM4Me, a methane biogeochemistry model integrated in CESM
journal, January 2011
- Riley, W. J.; Subin, Z. M.; Lawrence, D. M.
- Biogeosciences, Vol. 8, Issue 7
Ecosystem model spin-up: Estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model
journal, November 2005
- Thornton, Peter E.; Rosenbloom, Nan A.
- Ecological Modelling, Vol. 189, Issue 1-2
Connecting methane fluxes to vegetation cover and water table fluctuations at microsite level: A modeling study: CONNECTING CH
journal, May 2003
- Kettunen, Anu
- Global Biogeochemical Cycles, Vol. 17, Issue 2
Methanogenic archaea: ecologically relevant differences in energy conservation
journal, June 2008
- Thauer, Rudolf K.; Kaster, Anne-Kristin; Seedorf, Henning
- Nature Reviews Microbiology, Vol. 6, Issue 8
Thaw processes in ice-rich permafrost landscapes represented with laterally coupled tiles in a land surface model
journal, January 2019
- Aas, Kjetil S.; Martin, Léo; Nitzbon, Jan
- The Cryosphere, Vol. 13, Issue 2
Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales
journal, February 2013
- Bridgham, Scott D.; Cadillo-Quiroz, Hinsby; Keller, Jason K.
- Global Change Biology, Vol. 19, Issue 5
Implementation and evaluation of a new methane model within a dynamic global vegetation model: LPJ-WHyMe v1.3.1
journal, January 2010
- Wania, R.; Ross, I.; Prentice, I. C.
- Geoscientific Model Development, Vol. 3, Issue 2
A CH 4 emission estimate for the Kuparuk River basin, Alaska
journal, November 1998
- Reeburgh, W. S.; King, J. Y.; Regli, S. K.
- Journal of Geophysical Research: Atmospheres, Vol. 103, Issue D22
Large methane emission upon spring thaw from natural wetlands in the northern permafrost region
journal, July 2012
- Song, Changchun; Xu, Xiaofeng; Sun, Xiaoxin
- Environmental Research Letters, Vol. 7, Issue 3
Episodic release of methane bubbles from peatland during spring thaw
journal, December 2007
- Tokida, T.; Mizoguchi, M.; Miyazaki, T.
- Chemosphere, Vol. 70, Issue 2
The effect of vertically resolved soil biogeochemistry and alternate soil C and N models on C dynamics of CLM4
journal, January 2013
- Koven, C. D.; Riley, W. J.; Subin, Z. M.
- Biogeosciences, Vol. 10, Issue 11
Nonlinear controls on evapotranspiration in arctic coastal wetlands
journal, January 2011
- Liljedahl, A. K.; Hinzman, L. D.; Harazono, Y.
- Biogeosciences, Vol. 8, Issue 11
Upscaling methane fluxes from closed chambers to eddy covariance based on a permafrost biogeochemistry integrated model
journal, December 2011
- Zhang, Yu; Sachs, Torsten; Li, Changsheng
- Global Change Biology, Vol. 18, Issue 4
Biochemistry of Acetate Catabolism in Anaerobic Chemotrophic Bacteria
journal, October 1989
- Thauer, R. K.; Zinkhan, D. M.; Spormann, A. M.
- Annual Review of Microbiology, Vol. 43, Issue 1
Microtopographic controls on ecosystem functioning in the Arctic Coastal Plain
journal, January 2011
- Zona, D.; Lipson, D. A.; Zulueta, R. C.
- Journal of Geophysical Research, Vol. 116
Reviews and syntheses: Four decades of modeling methane cycling in terrestrial ecosystems
journal, January 2016
- Xu, Xiaofeng; Yuan, Fengming; Hanson, Paul J.
- Biogeosciences, Vol. 13, Issue 12
Methane, microbes and models: fundamental understanding of the soil methane cycle for future predictions: Methane, microbes and models
journal, May 2013
- Nazaries, Loïc; Murrell, J. Colin; Millard, Pete
- Environmental Microbiology, Vol. 15, Issue 9