Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain
Abstract
The low-complexity domain of the RNA-binding protein FUS (FUS LC) mediates liquid-liquid phase separation (LLPS), but the interactions between the repetitive SYGQ-rich sequence of FUS LC that stabilize the liquid phase are not known in detail. By combining NMR and Raman spectroscopy, mutagenesis, and molecular simulation, we demonstrate that heterogeneous interactions involving all residue types underlie LLPS of human FUS LC. Furthermore, we find no evidence that FUS LC adopts conformations with traditional secondary structure elements in the condensed phase; rather, it maintains conformational heterogeneity. We show that hydrogen bonding, π/sp2, and hydrophobic interactions all contribute to stabilizing LLPS of FUS LC. In addition to contributions from tyrosine residues, we find that glutamine residues also participate in contacts leading to LLPS of FUS LC. These results support a model in which FUS LC forms dynamic, multivalent interactions via multiple residue types and remains disordered in the densely packed liquid phase.
- Authors:
-
- Brown Univ., Providence, RI (United States)
- Lehigh Univ., Bethlehem, PA (United States)
- LUT Univ., Lappeenranta (Finland); Max Planck Inst. for Polymer Research, Mainz (Germany)
- Lehigh Univ., Bethlehem, PA (United States); Princeton Univ., NJ (United States)
- Max Planck Inst. for Polymer Research, Mainz (Germany); Univ. of Texas, Austin, TX (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Lehigh Univ., Bethlehem, PA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC); National Science Foundation (NSF); National Institutes of Health (NIH); German Research Foundation (DFG); Human Frontier Science Program; Marie Curie Foundation
- OSTI Identifier:
- 1577559
- Grant/Contract Number:
- AC02-05CH11231; SC0013979; R01GM118530; RGP0045/2018; NSF 1845734; 1644760; PA-252611-1; CIG322284; MCB-120014
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Nature Structural & Molecular Biology
- Additional Journal Information:
- Journal Volume: 26; Journal Issue: 7; Journal ID: ISSN 1545-9993
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Intrinsically disordered proteins; NMR spectroscopy; solution-state NMR
Citation Formats
Murthy, Anastasia C., Dignon, Gregory L., Kan, Yelena, Zerze, Gül H., Parekh, Sapun H., Mittal, Jeetain, and Fawzi, Nicolas L. Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain. United States: N. p., 2019.
Web. doi:10.1038/s41594-019-0250-x.
Murthy, Anastasia C., Dignon, Gregory L., Kan, Yelena, Zerze, Gül H., Parekh, Sapun H., Mittal, Jeetain, & Fawzi, Nicolas L. Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain. United States. https://doi.org/10.1038/s41594-019-0250-x
Murthy, Anastasia C., Dignon, Gregory L., Kan, Yelena, Zerze, Gül H., Parekh, Sapun H., Mittal, Jeetain, and Fawzi, Nicolas L. Mon .
"Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain". United States. https://doi.org/10.1038/s41594-019-0250-x. https://www.osti.gov/servlets/purl/1577559.
@article{osti_1577559,
title = {Molecular interactions underlying liquid-liquid phase separation of the FUS low-complexity domain},
author = {Murthy, Anastasia C. and Dignon, Gregory L. and Kan, Yelena and Zerze, Gül H. and Parekh, Sapun H. and Mittal, Jeetain and Fawzi, Nicolas L.},
abstractNote = {The low-complexity domain of the RNA-binding protein FUS (FUS LC) mediates liquid-liquid phase separation (LLPS), but the interactions between the repetitive SYGQ-rich sequence of FUS LC that stabilize the liquid phase are not known in detail. By combining NMR and Raman spectroscopy, mutagenesis, and molecular simulation, we demonstrate that heterogeneous interactions involving all residue types underlie LLPS of human FUS LC. Furthermore, we find no evidence that FUS LC adopts conformations with traditional secondary structure elements in the condensed phase; rather, it maintains conformational heterogeneity. We show that hydrogen bonding, π/sp2, and hydrophobic interactions all contribute to stabilizing LLPS of FUS LC. In addition to contributions from tyrosine residues, we find that glutamine residues also participate in contacts leading to LLPS of FUS LC. These results support a model in which FUS LC forms dynamic, multivalent interactions via multiple residue types and remains disordered in the densely packed liquid phase.},
doi = {10.1038/s41594-019-0250-x},
journal = {Nature Structural & Molecular Biology},
number = 7,
volume = 26,
place = {United States},
year = {Mon Jul 01 00:00:00 EDT 2019},
month = {Mon Jul 01 00:00:00 EDT 2019}
}
Works referenced in this record:
The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease
journal, June 2012
- King, Oliver D.; Gitler, Aaron D.; Shorter, James
- Brain Research, Vol. 1462
A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins
journal, July 2018
- Wang, Jie; Choi, Jeong-Mo; Holehouse, Alex S.
- Cell, Vol. 174, Issue 3
Phase separation of a yeast prion protein promotes cellular fitness
journal, January 2018
- Franzmann, Titus M.; Jahnel, Marcus; Pozniakovsky, Andrei
- Science, Vol. 359, Issue 6371
Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins
journal, October 2015
- Lin, Yuan; Protter, David S. W.; Rosen, Michael K.
- Molecular Cell, Vol. 60, Issue 2
Sarcomas: genetics, signalling, and cellular origins. Part 1: The fellowship of TET
journal, January 2007
- Riggi, N.; Cironi, L.; Suvà, M-L
- The Journal of Pathology, Vol. 213, Issue 1
A Liquid to Solid Phase Transition Underlying Pathological Huntingtin Exon1 Aggregation
journal, May 2018
- Peskett, Thomas R.; Rau, Frédérique; O’Driscoll, Jonathan
- Molecular Cell, Vol. 70, Issue 4
Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR
journal, October 2011
- Fawzi, Nicolas L.; Ying, Jinfa; Ghirlando, Rodolfo
- Nature, Vol. 480, Issue 7376
The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion
journal, June 2002
- Ribbeck, K.
- The EMBO Journal, Vol. 21, Issue 11
Broadband CARS spectral phase retrieval using a time-domain Kramers–Kronig transform
journal, January 2009
- Liu, Yuexin; Lee, Young Jong; Cicerone, Marcus T.
- Optics Letters, Vol. 34, Issue 9
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
journal, February 2008
- Hess, Berk; Kutzner, Carsten; van der Spoel, David
- Journal of Chemical Theory and Computation, Vol. 4, Issue 3
Spectral density function mapping using 15N relaxation data exclusively
journal, September 1995
- Farrow, Neil A.; Zhang, Ouwen; Szabo, Attila
- Journal of Biomolecular NMR, Vol. 6, Issue 2
Label-Free Cellular Imaging by Broadband Coherent Anti-Stokes Raman Scattering Microscopy
journal, October 2010
- Parekh, Sapun H.; Lee, Young Jong; Aamer, Khaled A.
- Biophysical Journal, Vol. 99, Issue 8
Phase separation in biology; functional organization of a higher order
journal, January 2016
- Mitrea, Diana M.; Kriwacki, Richard W.
- Cell Communication and Signaling, Vol. 14, Issue 1
Phase behaviour of disordered proteins underlying low density and high permeability of liquid organelles
journal, June 2017
- Wei, Ming-Tzo; Elbaum-Garfinkle, Shana; Holehouse, Alex S.
- Nature Chemistry, Vol. 9, Issue 11
Zur Lehre von der Wirkung der Salze: Zweite Mittheilung
journal, February 1888
- Hofmeister, Franz
- Archiv für Experimentelle Pathologie und Pharmakologie, Vol. 24, Issue 4-5
Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains
journal, November 2013
- Kwon, Ilmin; Kato, Masato; Xiang, Siheng
- Cell, Vol. 155, Issue 5
Effects of Hofmeister Anions on the Phase Transition Temperature of Elastin-like Polypeptides
journal, November 2008
- Cho, Younhee; Zhang, Yanjie; Christensen, Trine
- The Journal of Physical Chemistry B, Vol. 112, Issue 44
Lysines in the RNA Polymerase II C-Terminal Domain Contribute to TAF15 Fibril Recruitment
journal, September 2017
- Janke, Abigail M.; Seo, Da Hee; Rahmanian, Vahid
- Biochemistry, Vol. 57, Issue 17
Phosphoregulated FMRP phase separation models activity-dependent translation through bidirectional control of mRNA granule formation
journal, February 2019
- Tsang, Brian; Arsenault, Jason; Vernon, Robert M.
- Proceedings of the National Academy of Sciences, Vol. 116, Issue 10
Phosphorylation of the FUS low‐complexity domain disrupts phase separation, aggregation, and toxicity
journal, August 2017
- Monahan, Zachary; Ryan, Veronica H.; Janke, Abigail M.
- The EMBO Journal, Vol. 36, Issue 20
All characteristic Raman markers of tyrosine and tyrosinate originate from phenol ring fundamental vibrations: Characteristic Raman markers of tyrosine and tyrosinate
journal, August 2015
- Hernández, Belén; Coïc, Yves-Marie; Pflüger, Fernando
- Journal of Raman Spectroscopy, Vol. 47, Issue 2
ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function
journal, November 2015
- Murakami, Tetsuro; Qamar, Seema; Lin, Julie Qiaojin
- Neuron, Vol. 88, Issue 4
Atomic structures of low-complexity protein segments reveal kinked β sheets that assemble networks
journal, February 2018
- Hughes, Michael P.; Sawaya, Michael R.; Boyer, David R.
- Science, Vol. 359, Issue 6376
ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain
journal, September 2016
- Conicella, Alexander E.; Zerze, Gül H.; Mittal, Jeetain
- Structure, Vol. 24, Issue 9
Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes
journal, February 2011
- Brangwynne, C. P.; Mitchison, T. J.; Hyman, A. A.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 11
Replica-exchange molecular dynamics method for protein folding
journal, November 1999
- Sugita, Yuji; Okamoto, Yuko
- Chemical Physics Letters, Vol. 314, Issue 1-2
Direct observation of structure and dynamics during phase separation of an elastomeric protein
journal, May 2017
- Reichheld, Sean E.; Muiznieks, Lisa D.; Keeley, Fred W.
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 22
Balanced Protein–Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association
journal, October 2014
- Best, Robert B.; Zheng, Wenwei; Mittal, Jeetain
- Journal of Chemical Theory and Computation, Vol. 10, Issue 11
Atomic structures of FUS LC domain segments reveal bases for reversible amyloid fibril formation
journal, April 2018
- Luo, Feng; Gui, Xinrui; Zhou, Heng
- Nature Structural & Molecular Biology, Vol. 25, Issue 4
Structural and hydrodynamic properties of an intrinsically disordered region of a germ cell-specific protein on phase separation
journal, September 2017
- Brady, Jacob P.; Farber, Patrick J.; Sekhar, Ashok
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 39
Hydrodynamic Radii of Native and Denatured Proteins Measured by Pulse Field Gradient NMR Techniques †
journal, December 1999
- Wilkins, Deborah K.; Grimshaw, Shaun B.; Receveur, Véronique
- Biochemistry, Vol. 38, Issue 50
Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels
journal, May 2012
- Kato, Masato; Han, Tina W.; Xie, Shanhai
- Cell, Vol. 149, Issue 4
General purpose molecular dynamics simulations fully implemented on graphics processing units
journal, May 2008
- Anderson, Joshua A.; Lorenz, Chris D.; Travesset, A.
- Journal of Computational Physics, Vol. 227, Issue 10
Molecular Dissection of FUS Points at Synergistic Effect of Low-Complexity Domains in Toxicity
journal, July 2018
- Bogaert, Elke; Boeynaems, Steven; Kato, Masato
- Cell Reports, Vol. 24, Issue 3
FUS/TLS forms cytoplasmic aggregates, inhibits cell growth and interacts with TDP-43 in a yeast model of amyotrophic lateral sclerosis
journal, March 2011
- Kryndushkin, Dmitry; Wickner, Reed B.; Shewmaker, Frank
- Protein & Cell, Vol. 2, Issue 3
Sequence determinants of protein phase behavior from a coarse-grained model
journal, January 2018
- Dignon, Gregory L.; Zheng, Wenwei; Kim, Young C.
- PLOS Computational Biology, Vol. 14, Issue 1
Overlap concentration of macromolecules in solution
journal, March 1987
- Ying, Qicong.; Chu, Benjamin.
- Macromolecules, Vol. 20, Issue 2
NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy
journal, December 2014
- Lee, Woonghee; Tonelli, Marco; Markley, John L.
- Bioinformatics, Vol. 31, Issue 8
Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method
journal, January 2008
- Barducci, Alessandro; Bussi, Giovanni; Parrinello, Michele
- Physical Review Letters, Vol. 100, Issue 2
Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
journal, May 2009
- Brangwynne, C. P.; Eckmann, C. R.; Courson, D. S.
- Science, Vol. 324, Issue 5935
Intrinsically unstructured proteins
journal, October 2002
- Tompa, Peter
- Trends in Biochemical Sciences, Vol. 27, Issue 10
mRNA structure determines specificity of a polyQ-driven phase separation
journal, April 2018
- Langdon, Erin M.; Qiu, Yupeng; Ghanbari Niaki, Amirhossein
- Science, Vol. 360, Issue 6391
Enhanced Sampling in the Well-Tempered Ensemble
journal, May 2010
- Bonomi, M.; Parrinello, M.
- Physical Review Letters, Vol. 104, Issue 19
Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles
journal, March 2015
- Nott, Timothy J.; Petsalaki, Evangelia; Farber, Patrick
- Molecular Cell, Vol. 57, Issue 5
Pi-Pi contacts are an overlooked protein feature relevant to phase separation
journal, February 2018
- Vernon, Robert McCoy; Chong, Paul Andrew; Tsang, Brian
- eLife, Vol. 7
Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Interactions, and Phase Separation Altered by Mutation and Arginine Methylation
journal, February 2018
- Ryan, Veronica H.; Dignon, Gregory L.; Zerze, Gül H.
- Molecular Cell, Vol. 69, Issue 3
The Hydrogen-Bonding Ability of the Amino Acid Glutamine Revealed by Neutron Diffraction Experiments
journal, October 2012
- Rhys, N. H.; Soper, A. K.; Dougan, L.
- The Journal of Physical Chemistry B, Vol. 116, Issue 45
Relation between single-molecule properties and phase behavior of intrinsically disordered proteins
journal, September 2018
- Dignon, Gregory L.; Zheng, Wenwei; Best, Robert B.
- Proceedings of the National Academy of Sciences, Vol. 115, Issue 40
Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy
journal, July 2012
- Fawzi, Nicolas L.; Ying, Jinfa; Torchia, Dennis A.
- Nature Protocols, Vol. 7, Issue 8
Expression of human FUS/TLS in yeast leads to protein aggregation and cytotoxicity, recapitulating key features of FUS proteinopathy
journal, February 2011
- Fushimi, Kazuo; Long, Charles; Jayaram, Neha
- Protein & Cell, Vol. 2, Issue 2
Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs
journal, September 2017
- Lin, Yuan; Currie, Simon L.; Rosen, Michael K.
- Journal of Biological Chemistry, Vol. 292, Issue 46
Phase Separation of FUS Is Suppressed by Its Nuclear Import Receptor and Arginine Methylation
journal, April 2018
- Hofweber, Mario; Hutten, Saskia; Bourgeois, Benjamin
- Cell, Vol. 173, Issue 3
Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains
journal, October 2017
- Murray, Dylan T.; Kato, Masato; Lin, Yi
- Cell, Vol. 171, Issue 3
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
journal, November 1995
- Delaglio, Frank; Grzesiek, Stephan; Vuister, GeertenW.
- Journal of Biomolecular NMR, Vol. 6, Issue 3
Molecular Determinants and Genetic Modifiers of Aggregation and Toxicity for the ALS Disease Protein FUS/TLS
journal, April 2011
- Sun, Zhihui; Diaz, Zamia; Fang, Xiaodong
- PLoS Biology, Vol. 9, Issue 4
A yeast functional screen predicts new candidate ALS disease genes
journal, November 2011
- Couthouis, J.; Hart, M. P.; Shorter, J.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 52
Tau protein liquid–liquid phase separation can initiate tau aggregation
journal, February 2018
- Wegmann, Susanne; Eftekharzadeh, Bahareh; Tepper, Katharina
- The EMBO Journal, Vol. 37, Issue 7
Viscosity of water at various temperatures
journal, January 1969
- Korson, Lawrence; Drost-Hansen, Walter; Millero, Frank J.
- The Journal of Physical Chemistry, Vol. 73, Issue 1
Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II
journal, October 2015
- Burke, Kathleen A.; Janke, Abigail M.; Rhine, Christy L.
- Molecular Cell, Vol. 60, Issue 2
Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response
journal, March 2017
- Riback, Joshua A.; Katanski, Christopher D.; Kear-Scott, Jamie L.
- Cell, Vol. 168, Issue 6
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation
journal, August 2015
- Patel, Avinash; Lee, Hyun O.; Jawerth, Louise
- Cell, Vol. 162, Issue 5
Interpretation of the doublet at 850 and 830 cm -1 in the Raman spectra of tyrosyl residues in proteins and certain model compounds
journal, November 1975
- Siamwiza, Mwindaace N.; Lord, Richard C.; Chen, Michael C.
- Biochemistry, Vol. 14, Issue 22
Kinetics of Amyloid β Monomer-to-Oligomer Exchange by NMR Relaxation
journal, July 2010
- Fawzi, Nicolas L.; Ying, Jinfa; Torchia, Dennis A.
- Journal of the American Chemical Society, Vol. 132, Issue 29
Zur Lehre von der Wirkung der Salze: Erste Mittheilung
journal, September 1887
- Lewith, S.
- Archiv für Experimentelle Pathologie und Pharmakologie, Vol. 24, Issue 1-2
Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains
journal, January 2014
- Kwon, Ilmin; Kato, Masato; Xiang, Siheng
- Cell, Vol. 156, Issue 1-2
Pol II phosphorylation regulates a switch between transcriptional and splicing condensates
journal, August 2019
- Guo, Yang Eric; Manteiga, John C.; Henninger, Jonathan E.
- Nature, Vol. 572, Issue 7770
Multi-functionality of a tryptophan residue conserved in substrate-binding groove of GH19 chitinases
journal, January 2021
- Nagata, Takuya; Shinya, Shoko; Ohnuma, Takayuki
- Scientific Reports, Vol. 11, Issue 1
A Liquid to Solid Phase Transition Underlying Pathological Huntingtin Exon1 Aggregation
text, January 2018
- Peskett, Thomas R.; Rau, Frédérique; O'Driscoll, Jonathan
- ETH Zurich
Zur Lehre von der Wirkung der Salze: 7. Mittheilung: Die Allgemeinwirkung der Salze
journal, March 1898
- Münzer, Egmont
- Archiv für Experimentelle Pathologie und Pharmakologie, Vol. 41, Issue 1
Zur Lehre von der Wirkung der Salze: Vierte Mittheilung. Ueber die diuretische Wirkung der Salze
journal, August 1888
- Limbeck, R.
- Archiv für Experimentelle Pathologie und Pharmakologie, Vol. 25, Issue 1
Tau protein liquid–liquid phase separation can initiate tau aggregation
text, January 2018
- Susanne, Wegmann,; Bahareh, Eftekharzadeh,; Katharina, Tepper,
- ETH Zurich
Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method
text, January 2008
- Barducci, Alessandro; Bussi, Giovanni; Parrinello, Michele
- arXiv
Sarcomas: genetics, signalling, and cellular origins. Part 2: TET-independent fusion proteins and receptor tyrosine kinase mutations
journal, January 2007
- Suvà, M-L; Cironi, L.; Riggi, N.
- The Journal of Pathology, Vol. 213, Issue 2
Expression of human FUS/TLS in yeast leads to protein aggregation and cytotoxicity, recapitulating key features of FUS proteinopathy
journal, February 2011
- Fushimi, Kazuo; Long, Charles; Jayaram, Neha
- Protein & Cell, Vol. 2, Issue 2
FUS/TLS forms cytoplasmic aggregates, inhibits cell growth and interacts with TDP-43 in a yeast model of amyotrophic lateral sclerosis
journal, March 2011
- Kryndushkin, Dmitry; Wickner, Reed B.; Shewmaker, Frank
- Protein & Cell, Vol. 2, Issue 3
Label-Free Cellular Imaging by Broadband Coherent Anti-Stokes Raman Scattering Microscopy
journal, October 2010
- Parekh, Sapun H.; Lee, Young Jong; Aamer, Khaled A.
- Biophysical Journal, Vol. 99, Issue 8
Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels
journal, May 2012
- Kato, Masato; Han, Tina W.; Xie, Shanhai
- Cell, Vol. 149, Issue 4
Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains
journal, November 2013
- Kwon, Ilmin; Kato, Masato; Xiang, Siheng
- Cell, Vol. 155, Issue 5
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation
journal, August 2015
- Patel, Avinash; Lee, Hyun O.; Jawerth, Louise
- Cell, Vol. 162, Issue 5
Gel or Die: Phase Separation as a Survival Strategy
journal, March 2017
- Kroschwald, Sonja; Alberti, Simon
- Cell, Vol. 168, Issue 6
FUS Zigzags Its Way to Cross Beta
journal, October 2017
- Holehouse, Alex S.; Pappu, Rohit V.
- Cell, Vol. 171, Issue 3
Phase Separation of FUS Is Suppressed by Its Nuclear Import Receptor and Arginine Methylation
journal, April 2018
- Hofweber, Mario; Hutten, Saskia; Bourgeois, Benjamin
- Cell, Vol. 173, Issue 3
Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II
journal, October 2015
- Burke, Kathleen A.; Janke, Abigail M.; Rhine, Christy L.
- Molecular Cell, Vol. 60, Issue 2
Forms and Phases in Huntingtin Protein Aggregation
journal, May 2018
- Elbaum, Michael
- Molecular Cell, Vol. 70, Issue 4
A New Phase in ALS Research
journal, September 2016
- Chong, P. Andrew; Forman-Kay, Julie D.
- Structure, Vol. 24, Issue 9
Lysines in the RNA Polymerase II C-Terminal Domain Contribute to TAF15 Fibril Recruitment
journal, September 2017
- Janke, Abigail M.; Seo, Da Hee; Rahmanian, Vahid
- Biochemistry, Vol. 57, Issue 17
Correction to Balanced Protein–Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association
journal, March 2015
- Best, Robert B.; Zheng, Wenwei; Mittal, Jeetain
- Journal of Chemical Theory and Computation, Vol. 11, Issue 4
Interpretation of the doublet at 850 and 830 cm -1 in the Raman spectra of tyrosyl residues in proteins and certain model compounds
journal, November 1975
- Siamwiza, Mwindaace N.; Lord, Richard C.; Chen, Michael C.
- Biochemistry, Vol. 14, Issue 22
Hydrodynamic Radii of Native and Denatured Proteins Measured by Pulse Field Gradient NMR Techniques †
journal, December 1999
- Wilkins, Deborah K.; Grimshaw, Shaun B.; Receveur, Véronique
- Biochemistry, Vol. 38, Issue 50
The Hydrogen-Bonding Ability of the Amino Acid Glutamine Revealed by Neutron Diffraction Experiments
journal, October 2012
- Rhys, N. H.; Soper, A. K.; Dougan, L.
- The Journal of Physical Chemistry B, Vol. 116, Issue 45
Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR
journal, October 2011
- Fawzi, Nicolas L.; Ying, Jinfa; Ghirlando, Rodolfo
- Nature, Vol. 480, Issue 7376
Phase behaviour of disordered proteins underlying low density and high permeability of liquid organelles
journal, June 2017
- Wei, Ming-Tzo; Elbaum-Garfinkle, Shana; Holehouse, Alex S.
- Nature Chemistry, Vol. 9, Issue 11
Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy
journal, July 2012
- Fawzi, Nicolas L.; Ying, Jinfa; Torchia, Dennis A.
- Nature Protocols, Vol. 7, Issue 8
Atomic structures of FUS LC domain segments reveal bases for reversible amyloid fibril formation
journal, April 2018
- Luo, Feng; Gui, Xinrui; Zhou, Heng
- Nature Structural & Molecular Biology, Vol. 25, Issue 4
A yeast functional screen predicts new candidate ALS disease genes
journal, November 2011
- Couthouis, J.; Hart, M. P.; Shorter, J.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 52
Direct observation of structure and dynamics during phase separation of an elastomeric protein
journal, May 2017
- Reichheld, Sean E.; Muiznieks, Lisa D.; Keeley, Fred W.
- Proceedings of the National Academy of Sciences, Vol. 114, Issue 22
Relation between single-molecule properties and phase behavior of intrinsically disordered proteins
journal, September 2018
- Dignon, Gregory L.; Zheng, Wenwei; Best, Robert B.
- Proceedings of the National Academy of Sciences, Vol. 115, Issue 40
The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion
journal, June 2002
- Ribbeck, K.
- The EMBO Journal, Vol. 21, Issue 11
Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
journal, May 2009
- Brangwynne, C. P.; Eckmann, C. R.; Courson, D. S.
- Science, Vol. 324, Issue 5935
Phase separation in biology; functional organization of a higher order
journal, January 2016
- Mitrea, Diana M.; Kriwacki, Richard W.
- Cell Communication and Signaling, Vol. 14, Issue 1
Molecular Determinants and Genetic Modifiers of Aggregation and Toxicity for the ALS Disease Protein FUS/TLS
journal, April 2011
- Sun, Zhihui; Diaz, Zamia; Fang, Xiaodong
- PLoS Biology, Vol. 9, Issue 4
Tau protein liquid–liquid phase separation can initiate tau aggregation
journal, February 2018
- Wegmann, Susanne; Eftekharzadeh, Bahareh; Tepper, Katharina
- The EMBO Journal, Vol. 37, Issue 7
Works referencing / citing this record:
Phase behavior of blocky charge lattice polymers: Crystals, liquids, sheets, filaments, and clusters
journal, November 2019
- Robichaud, Nicholas A. S.; Saika-Voivod, Ivan; Wallin, Stefan
- Physical Review E, Vol. 100, Issue 5
Expression and phase separation potential of heterochromatin proteins during early mouse development
journal, November 2019
- Guthmann, Manuel; Burton, Adam; Torres‐Padilla, Maria‐Elena
- EMBO reports, Vol. 20, Issue 12
Life in Phases: Intra- and Inter- Molecular Phase Transitions in Protein Solutions
journal, December 2019
- Uversky, Vladimir; Finkelstein, Alexei
- Biomolecules, Vol. 9, Issue 12
The Role of Post-Translational Modifications in the Phase Transitions of Intrinsically Disordered Proteins
journal, November 2019
- Owen, Izzy; Shewmaker, Frank
- International Journal of Molecular Sciences, Vol. 20, Issue 21
Computational Nanoscopy of Tight Junctions at the Blood–Brain Barrier Interface
journal, November 2019
- Rajagopal, Nandhini; Irudayanathan, Flaviyan Jerome; Nangia, Shikha
- International Journal of Molecular Sciences, Vol. 20, Issue 22
Phase behavior of blocky charge lattice polymers: Crystals, liquids, sheets, filaments and clusters
text, January 2019
- Robichaud, Nicholas A. S.; Saika-Voivod, Ivan; Wallin, Stefan
- arXiv
Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range
journal, August 2022
- Tesei, Giulio; Lindorff-Larsen, Kresten
- Open Research Europe, Vol. 2
hnRNPDL Phase Separation Is Regulated by Alternative Splicing and Disease-Causing Mutations Accelerate Its Aggregation
journal, January 2020
- Batlle, Cristina; Yang, Peiguo; Coughlin, Maura
- Cell Reports, Vol. 30, Issue 4
Molecular structure in biomolecular condensates
journal, February 2020
- Peran, Ivan; Mittag, Tanja
- Current Opinion in Structural Biology, Vol. 60
PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins
journal, December 2020
- Lazar, Tamas; Martínez-Pérez, Elizabeth; Quaglia, Federica
- Nucleic Acids Research, Vol. 49, Issue D1
New technologies to analyse protein function: an intrinsic disorder perspective
journal, February 2020
- Uversky, Vladimir N.
- F1000Research, Vol. 9
Expression and phase separation potential of heterochromatin proteins during early mouse development
journal, November 2019
- Guthmann, Manuel; Burton, Adam; Torres‐Padilla, Maria‐Elena
- EMBO reports, Vol. 20, Issue 12
Late Postoperative Cardiac Tamponade Presenting as a Pulsatile Epigastric Mass
journal, January 1993
- Battle, Robert W.; Tischler, Marc D.
- Scandinavian Journal of Thoracic and Cardiovascular Surgery, Vol. 27, Issue 3-4
The Overlapping Genetics of Amyotrophic Lateral Sclerosis and Frontotemporal Dementia
journal, February 2020
- Abramzon, Yevgeniya A.; Fratta, Pietro; Traynor, Bryan J.
- Frontiers in Neuroscience, Vol. 14
The Role of Post-Translational Modifications in the Phase Transitions of Intrinsically Disordered Proteins
journal, November 2019
- Owen, Izzy; Shewmaker, Frank
- International Journal of Molecular Sciences, Vol. 20, Issue 21
Computational Nanoscopy of Tight Junctions at the Blood–Brain Barrier Interface
journal, November 2019
- Rajagopal, Nandhini; Irudayanathan, Flaviyan Jerome; Nangia, Shikha
- International Journal of Molecular Sciences, Vol. 20, Issue 22
Fused in Sarcoma (FUS) in DNA Repair: Tango with Poly(ADP-ribose) Polymerase 1 and Compartmentalisation of Damaged DNA
journal, September 2020
- Sukhanova, Maria V.; Singatulina, Anastasia S.; Pastré, David
- International Journal of Molecular Sciences, Vol. 21, Issue 19
Liquid–Liquid Phase Separation by Intrinsically Disordered Protein Regions of Viruses: Roles in Viral Life Cycle and Control of Virus–Host Interactions
journal, November 2020
- Brocca, Stefania; Grandori, Rita; Longhi, Sonia
- International Journal of Molecular Sciences, Vol. 21, Issue 23