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Title: Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials

Journal Article · · Nature Communications

Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed phases, e.g. lithium ions in electrolytes, water molecules in membranes, molten atoms at interfaces, etc., which are difficult to understand due to the complexity of local environments. In this work, we develop graph dynamical networks, an unsupervised learning approach for understanding atomic scale dynamics in arbitrary phases and environments from molecular dynamics simulations. We show that important dynamical information, which would be difficult to obtain otherwise, can be learned for various multi-component amorphous material systems. With the large amounts of molecular dynamics data generated every day in nearly every aspect of materials design, this approach provides a broadly applicable, automated tool to understand atomic scale dynamics in material systems.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities Division
Grant/Contract Number:
AC02-05CH11231; ACI-1053575
OSTI ID:
1577554
Journal Information:
Nature Communications, Vol. 10, Issue 1; ISSN 2041-1723
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 71 works
Citation information provided by
Web of Science

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Markov State Models: From an Art to a Science journal February 2018
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Designing Carbon Nanotube Membranes for Efficient Water Desalination journal February 2008
Understanding the Lithium Transport within a Rouse-Based Model for a PEO/LiTFSI Polymer Electrolyte journal February 2010
Water Desalination across Nanoporous Graphene journal June 2012
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Strain-induced room-temperature ferroelectricity in SrTiO3 membranes journal June 2020
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Challenges in the development of advanced Li-ion batteries: a review journal January 2011
Markov state model of the two-state behaviour of water journal October 2016
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SchNet – A deep learning architecture for molecules and materials journal June 2018
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Negative Transference Numbers in Poly(ethylene oxide)-Based Electrolytes journal January 2017
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Cited By (2)

Dynamic graphical models of molecular kinetics journal July 2019
Differentiable Molecular Simulations for Control and Learning preprint January 2020