Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Varoquaux, Nelle; Cole, Benjamin; Gao, Cheng; Pierroz, Grady; Baker, Christopher R.; Patel, Dhruv; Madera, Mary; Jeffers, Tim; Hollingsworth, Joy; Sievert, Julie; Yoshinaga, Yuko; Owiti, Judith A.; Singan, Vasanth R.; DeGraaf, Stephanie; Xu, Ling; Blow, Matthew J.; Harrison, Maria J.; Visel, Axel; Jansson, Christer; Niyogi, Krishna K.; Hutmacher, Robert; Coleman-Derr, Devin; O’Malley, Ronan C.; Taylor, John W.; Dahlberg, Jeffery; Vogel, John P.; Lemaux, Peggy G.; Purdom, Elizabeth

doi:10.1073/pnas.1907500116

Title: Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Journal Article · 05 December 2019 · Proceedings of the National Academy of Sciences of the United States of America

DOI: https://doi.org/10.1073/pnas.1907500116 · OSTI ID:1577228

^[1]; Cole, Benjamin ^[2];

^[1]; Pierroz, Grady ^[3]; Baker, Christopher R. ^[1];

^[1]; Madera, Mary ^[1]; Jeffers, Tim ^[1]; Hollingsworth, Joy ^[4]; Sievert, Julie ^[4];

^[2]; Owiti, Judith A. ^[1]; Singan, Vasanth R. ^[2]; DeGraaf, Stephanie ^[1]; Xu, Ling ^[3]; Blow, Matthew J. ^[2]; Harrison, Maria J. ^[5]; Visel, Axel ^[6];

^[7];

^[8] more »

Univ. of California, Berkeley, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Univ. of California, Berkeley, CA (United States); US Department of Agriculture–Agricultural Research Service, Albany, CA (United States)
Univ. of California Agriculture and Natural Resources, Parlier, CA (United States)
Boyce Thompson Inst., Ithaca, NY (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Univ. of California, Merced, CA (United States)
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Univ. of California, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Univ. of California, Five Points, CA (United States); Univ. of California, Davis, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Univ. of California, Berkeley, CA (United States)

Drought is the most important environmental stress limiting crop yields. The C4 cereal sorghum [Sorghum bicolor(L.) Moench] is a critical food, forage, and emerging bioenergy crop that is notably drought-tolerant. We conducted a large-scale field experiment, imposing preflowering and postflowering drought stress on 2 genotypes of sorghum across a tightly resolved time series, from plant emergence to postanthesis, resulting in a dataset of nearly 400 transcriptomes. We observed a fast and global transcriptomic response in leaf and root tissues with clear temporal patterns, including modulation of well-known drought pathways. We also identified genotypic differences in core photosynthesis and reactive oxygen species scavenging pathways, highlighting possible mechanisms of drought tolerance and of the delayed senescence, characteristic of the stay-green phenotype. Lastly, we discovered a large-scale depletion in the expression of genes critical to arbuscular mycorrhizal (AM) symbiosis, with a corresponding drop in AM fungal mass in the plants’ roots.

View Journal Article

Cite

Export

Save

Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); University of California, Berkeley, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC05-76RL01830; SC0012460; SC0014081; AC02-05CH11231

OSTI ID:: 1577228

Alternate ID(s):: OSTI ID: 1582406; OSTI ID: 1591847; OSTI ID: 1660760

Report Number(s):: PNNL-SA-140530

Journal Information:: Proceedings of the National Academy of Sciences of the United States of America, Vol. 116, Issue 52; ISSN 0027-8424

Publisher:: National Academy of SciencesCopyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 87 works

Citation information provided by
Web of Science

References (78)

Sorghum bicolor’s Transcriptome Response to Dehydration, High Salinity and ABA Buchanan, Christina D.; Lim, Sanghyun; Salzman, Ron A. Plant Molecular Biology, Vol. 58, Issue 5 https://doi.org/10.1007/s11103-005-7876-2	journal	July 2005
The Sorghum bicolor genome and the diversification of grasses Paterson, Andrew H.; Bowers, John E.; Bruggmann, Rémy Nature, Vol. 457, Issue 7229 https://doi.org/10.1038/nature07723	journal	January 2009
Leaf Photoassimilation and Partitioning in Stress-Tolerant Sorghum Sowder, C. Matt; Tarpley, Lee; Vietor, Donald M. Crop Science, Vol. 37, Issue 3 https://doi.org/10.2135/cropsci1997.0011183X003700030023x	journal	January 1997
Antioxidant Bioprospecting in Microalgae: Characterisation of the Potential of Two Marine Heterokonts from Irish Waters Archer, Lorraine; McGee, Dónal; Parkes, Rachel Applied Biochemistry and Biotechnology, Vol. 193, Issue 4 https://doi.org/10.1007/s12010-020-03467-8	journal	November 2020
The alternative oxidase lowers mitochondrial reactive oxygen production in plant cells Maxwell, D. P.; Wang, Y.; McIntosh, L. Proceedings of the National Academy of Sciences, Vol. 96, Issue 14 https://doi.org/10.1073/pnas.96.14.8271	journal	July 1999
Stay-green alleles individually enhance grain yield in sorghum under drought by modifying canopy development and water uptake patterns Borrell, Andrew K.; van Oosterom, Erik J.; Mullet, John E. New Phytologist, Vol. 203, Issue 3 https://doi.org/10.1111/nph.12869	journal	June 2014
Regulatory Shifts in Plastid Transcription Play a Key Role in Morphological Conversions of Plastids during Plant Development Liebers, Monique; Grübler, Björn; Chevalier, Fabien Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.00023	journal	January 2017
Two Transcription Factors, DREB1 and DREB2, with an EREBP/AP2 DNA Binding Domain Separate Two Cellular Signal Transduction Pathways in Drought- and Low-Temperature-Responsive Gene Expression, Respectively, in Arabidopsis Liu, Qiang; Kasuga, Mie; Sakuma, Yoh The Plant Cell, Vol. 10, Issue 8 https://doi.org/10.1105/tpc.10.8.1391	journal	August 1998
Selection System for the Stay-Green Drought Tolerance Trait in Sorghum Germplasm Burke, J. J.; Franks, C. D.; Burow, G. Agronomy Journal, Vol. 102, Issue 4 https://doi.org/10.2134/agronj2009.0465	journal	January 2010
Stay-green plants: what do they tell us about the molecular mechanism of leaf senescence Kusaba, Makoto; Tanaka, Ayumi; Tanaka, Ryouichi Photosynthesis Research, Vol. 117, Issue 1-3 https://doi.org/10.1007/s11120-013-9862-x	journal	June 2013
Identification and analysis of glutathione S-transferase gene family in sweet potato reveal divergent GST-mediated networks in aboveground and underground tissues in response to abiotic stresses Ding, Na; Wang, Aimin; Zhang, Xiaojun BMC Plant Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s12870-017-1179-z	journal	November 2017
Revisiting the Non-Animal Peroxidase Superfamily Lazzarotto, Fernanda; Turchetto-Zolet, Andreia Carina; Margis-Pinheiro, Márcia Trends in Plant Science, Vol. 20, Issue 12 https://doi.org/10.1016/j.tplants.2015.08.005	journal	December 2015
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization McCormick, Ryan F.; Truong, Sandra K.; Sreedasyam, Avinash The Plant Journal, Vol. 93, Issue 2 https://doi.org/10.1111/tpj.13781	journal	December 2017
Water relations, drought and vesicular-arbuscular mycorrhizal symbiosis Augé, Robert M. Mycorrhiza, Vol. 11, Issue 1 https://doi.org/10.1007/s005720100097	journal	May 2001
The Sorghum bicolor genome and the diversification of grasses H., Paterson, A.; E., Bowers, J.; R., Bruggmann, Nature Publishing Group https://doi.org/10.5167/uzh-16962	text	January 2009
Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress Johnson, Stephanie M.; Lim, Fei-Ling; Finkler, Aliza BMC Genomics, Vol. 15, Issue 1 https://doi.org/10.1186/1471-2164-15-456	journal	January 2014
Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome Assembly Yazawa, Takayuki; Kawahigashi, Hiroyuki; Matsumoto, Takashi PLoS ONE, Vol. 8, Issue 4 https://doi.org/10.1371/journal.pone.0062460	journal	April 2013
Strong succession in arbuscular mycorrhizal fungal communities Gao, Cheng; Montoya, Liliam; Xu, Ling The ISME Journal, Vol. 13, Issue 1 https://doi.org/10.1038/s41396-018-0264-0	journal	August 2018
Influence of extreme weather disasters on global crop production Lesk, Corey; Rowhani, Pedram; Ramankutty, Navin The University of British Columbia https://doi.org/10.14288/1.0376077	text	January 2019
Screening for drought tolerance in Sorghum using cell culture Smith, R. H.; Bhaskaran, S.; Miller, F. R. In Vitro Cellular amp; Developmental Biology, Vol. 21, Issue 10 https://doi.org/10.1007/BF02620883	journal	October 1985
Two Transcription Factors, DREB1 and DREB2, with an EREBP/AP2 DNA Binding Domain Separate Two Cellular Signal Transduction Pathways in Drought- and Low-Temperature-Responsive Gene Expression, Respectively, in Arabidopsis Liu, Qiang; Kasuga, Mie; Sakuma, Yoh The Plant Cell, Vol. 10, Issue 8 https://doi.org/10.2307/3870648	journal	August 1998
Mycorrhizal Fungi Smith, S. E. CRC Critical Reviews in Microbiology, Vol. 3, Issue 3 https://doi.org/10.3109/10408417409108753	journal	January 1974
Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE Fracasso, Alessandra; Trindade, Luisa M.; Amaducci, Stefano BMC Plant Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12870-016-0800-x	journal	May 2016
Alternative oxidase respiration maintains both mitochondrial and chloroplast function during drought Dahal, Keshav; Vanlerberghe, Greg C. New Phytologist, Vol. 213, Issue 2 https://doi.org/10.1111/nph.14169	journal	August 2016
Overexpression of Ferredoxin, PETF, Enhances Tolerance to Heat Stress in Chlamydomonas reinhardtii Lin, Yi-Hsien; Pan, Kui-You; Hung, Ching-Hui International Journal of Molecular Sciences, Vol. 14, Issue 10 https://doi.org/10.3390/ijms141020913	journal	October 2013
ROS and redox signalling in the response of plants to abiotic stress: ROS and redox signalling in plants Suzuki, Nobuhiro; Koussevitzky, Shai; Mittler, Ron Plant, Cell & Environment, Vol. 35, Issue 2 https://doi.org/10.1111/j.1365-3040.2011.02336.x	journal	June 2011
The Pivotal Role of Ethylene in Plant Growth Dubois, Marieke; Van den Broeck, Lisa; Inzé, Dirk Trends in Plant Science, Vol. 23, Issue 4 https://doi.org/10.1016/j.tplants.2018.01.003	journal	April 2018
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid Dugas, Diana V.; Monaco, Marcela K.; Olson, Andrew BMC Genomics, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2164-12-514	journal	October 2011
Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana: Genomic studies of Arabidopsis accessions Juenger, Thomas E.; Sen, Saunak; Bray, Elizabeth Plant, Cell & Environment, Vol. 33, Issue 8 https://doi.org/10.1111/j.1365-3040.2010.02146.x	journal	March 2010
Drought tolerant sorghum and cotton germplasm Rosenow, D. T.; Quisenberry, J. E.; Wendt, C. W. Agricultural Water Management, Vol. 7, Issue 1-3 https://doi.org/10.1016/0378-3774(83)90084-7	journal	September 1983
Colonisation with the arbuscular mycorrhizal fungus Glomus mosseae (Nicol. & Gerd.) enhanced phosphorus uptake from dry soil in Sorghum bicolor (L.) Neumann, Elke; George, Eckhard Plant and Soil, Vol. 261, Issue 1/2 https://doi.org/10.1023/B:PLSO.0000035573.94425.60	journal	April 2004
Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria Xu, Ling; Naylor, Dan; Dong, Zhaobin Proceedings of the National Academy of Sciences, Vol. 115, Issue 18 https://doi.org/10.1073/pnas.1717308115	journal	April 2018
The Role of WRKY Transcription Factors in Plant Immunity: Figure 1. Pandey, Shree P.; Somssich, Imre E. Plant Physiology, Vol. 150, Issue 4 https://doi.org/10.1104/pp.109.138990	journal	May 2009
Predisposition in Plant Disease: Exploiting the Nexus in Abiotic and Biotic Stress Perception and Response Bostock, Richard M.; Pye, Matthew F.; Roubtsova, Tatiana V. Annual Review of Phytopathology, Vol. 52, Issue 1 https://doi.org/10.1146/annurev-phyto-081211-172902	journal	August 2014
Arbuscular mycorrhizal symbiosis alters stomatal conductance of host plants more under drought than under amply watered conditions: a meta-analysis Augé, Robert M.; Toler, Heather D.; Saxton, Arnold M. Mycorrhiza, Vol. 25, Issue 1 https://doi.org/10.1007/s00572-014-0585-4	journal	May 2014
Over-represented promoter motifs in abiotic stress-induced DREB genes of rice and sorghum and their probable role in regulation of gene expression Srivasta, Amrita; Mehta, Sameet; Lindlof, Angelica Plant Signaling & Behavior, Vol. 5, Issue 7 https://doi.org/10.4161/psb.5.7.11769	journal	July 2010
Transcriptomic analysis comparing stay-green and senescent Sorghum bicolor lines identifies a role for proline biosynthesis in the stay-green trait Johnson, Stephanie M.; Cummins, Ian; Lim, Fei Ling Journal of Experimental Botany, Vol. 66, Issue 22 https://doi.org/10.1093/jxb/erv405	journal	August 2015
Reactive oxygen species (ROS) and response of antioxidants as ROS-scavengers during environmental stress in plants Das, Kaushik; Roychoudhury, Aryadeep Frontiers in Environmental Science, Vol. 2 https://doi.org/10.3389/fenvs.2014.00053	journal	December 2014
Diverse Sorghum bicolor accessions show marked variation in growth and transcriptional responses to arbuscular mycorrhizal fungi Watts‐Williams, Stephanie J.; Emmett, Bryan D.; Levesque‐Tremblay, Veronique Plant, Cell & Environment, Vol. 42, Issue 5 https://doi.org/10.1111/pce.13509	journal	January 2019
Mycorrhizal fungi Watling, Roy Bulletin of the British Mycological Society, Vol. 14, Issue 1 https://doi.org/10.1016/s0007-1528(80)80036-8	journal	April 1980
Natural variation and genetic constraints on drought tolerance Juenger, Thomas E. Current Opinion in Plant Biology, Vol. 16, Issue 3 https://doi.org/10.1016/j.pbi.2013.02.001	journal	June 2013
Sorghum stay-green QTL individually reduce post-flowering drought-induced leaf senescence Harris, K.; Subudhi, P.; Borrell, A. Journal of Experimental Botany, Vol. 58, Issue 2 https://doi.org/10.1093/jxb/erl225	journal	November 2006
Influence of extreme weather disasters on global crop production Lesk, Corey; Rowhani, Pedram; Ramankutty, Navin Nature, Vol. 529, Issue 7584 https://doi.org/10.1038/nature16467	journal	January 2016
Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis MacLean, Allyson M.; Bravo, Armando; Harrison, Maria J. The Plant Cell, Vol. 29, Issue 10 https://doi.org/10.1105/tpc.17.00555	journal	August 2017
Impact of drought on photosynthesis: Molecular perspective Zargar, Sajad Majeed; Gupta, Nancy; Nazir, Muslima Plant Gene, Vol. 11 https://doi.org/10.1016/j.plgene.2017.04.003	journal	September 2017
Increased precipitation, rather than warming, exerts a strong influence on arbuscular mycorrhizal fungal community in a semiarid steppe ecosystem Gao, Cheng; Kim, Yong-Chan; Zheng, Yong Botany, Vol. 94, Issue 6 https://doi.org/10.1139/cjb-2015-0210	journal	June 2016
Stay green trait in grain sorghum: relationship between visual rating and leaf chlorophyll concentration Xu, W.; Rosenow, D. T.; Nguyen, H. T. Plant Breeding, Vol. 119, Issue 4 https://doi.org/10.1046/j.1439-0523.2000.00506.x	journal	August 2000
Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum Mace, Emma S.; Tai, Shuaishuai; Gilding, Edward K. Nature Communications, Vol. 4, Issue 1 https://doi.org/10.1038/ncomms3320	journal	August 2013
Additional file 6: Table S4. of Identification and analysis of glutathione S-transferase gene family in sweet potato reveal divergent GST-mediated networks in aboveground and underground tissues in response to abiotic stresses Ding, Na; Wang, Aimin; Zhang, Xiaojun figshare https://doi.org/10.6084/m9.figshare.5639914	dataset	January 2017
Five ways to stay green Thomas, Howard; Howarth, Catherine J. Journal of Experimental Botany, Vol. 51, Issue suppl_1 https://doi.org/10.1093/jexbot/51.suppl_1.329	journal	February 2000
Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis Song, Yu; Chen, Ligang; Zhang, Liping Journal of Biosciences, Vol. 35, Issue 3 https://doi.org/10.1007/s12038-010-0051-1	journal	July 2010
Additional file 6: Table S4. of Identification and analysis of glutathione S-transferase gene family in sweet potato reveal divergent GST-mediated networks in aboveground and underground tissues in response to abiotic stresses Ding, Na; Wang, Aimin; Zhang, Xiaojun figshare https://doi.org/10.6084/m9.figshare.5639914.v1	dataset	January 2017
Crop Production under Drought and Heat Stress: Plant Responses and Management Options Fahad, Shah; Bajwa, Ali A.; Nazir, Usman Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.01147	journal	June 2017
Arbuscular mycorrhizal symbiosis alters stomatal conductance of host plants more under drought than under amply watered conditions: a meta-analysis Augé, Robert M.; Toler, Heather D.; Saxton, Arnold M. Mycorrhiza, Vol. 25, Issue 1 https://doi.org/10.1007/s00572-014-0585-4	journal	May 2014
Sorghum bicolor’s Transcriptome Response to Dehydration, High Salinity and ABA Buchanan, Christina D.; Lim, Sanghyun; Salzman, Ron A. Plant Molecular Biology, Vol. 58, Issue 5 https://doi.org/10.1007/s11103-005-7876-2	journal	July 2005
Stay-green plants: what do they tell us about the molecular mechanism of leaf senescence Kusaba, Makoto; Tanaka, Ayumi; Tanaka, Ryouichi Photosynthesis Research, Vol. 117, Issue 1-3 https://doi.org/10.1007/s11120-013-9862-x	journal	June 2013
Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis Song, Yu; Chen, Ligang; Zhang, Liping Journal of Biosciences, Vol. 35, Issue 3 https://doi.org/10.1007/s12038-010-0051-1	journal	July 2010
Natural variation and genetic constraints on drought tolerance Juenger, Thomas E. Current Opinion in Plant Biology, Vol. 16, Issue 3 https://doi.org/10.1016/j.pbi.2013.02.001	journal	June 2013
Revisiting the Non-Animal Peroxidase Superfamily Lazzarotto, Fernanda; Turchetto-Zolet, Andreia Carina; Margis-Pinheiro, Márcia Trends in Plant Science, Vol. 20, Issue 12 https://doi.org/10.1016/j.tplants.2015.08.005	journal	December 2015
Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum Mace, Emma S.; Tai, Shuaishuai; Gilding, Edward K. Nature Communications, Vol. 4, Issue 1 https://doi.org/10.1038/ncomms3320	journal	August 2013
Agriculture: Disaster reduction Armstrong, Anna Nature Plants, Vol. 2, Issue 2 https://doi.org/10.1038/nplants.2015.213	journal	February 2016
The alternative oxidase lowers mitochondrial reactive oxygen production in plant cells Maxwell, D. P.; Wang, Y.; McIntosh, L. Proceedings of the National Academy of Sciences, Vol. 96, Issue 14 https://doi.org/10.1073/pnas.96.14.8271	journal	July 1999
Five ways to stay green Thomas, Howard; Howarth, Catherine J. Journal of Experimental Botany, Vol. 51, Issue suppl_1 https://doi.org/10.1093/jexbot/51.suppl_1.329	journal	February 2000
Sorghum stay-green QTL individually reduce post-flowering drought-induced leaf senescence Harris, K.; Subudhi, P.; Borrell, A. Journal of Experimental Botany, Vol. 58, Issue 2 https://doi.org/10.1093/jxb/erl225	journal	November 2006
Transcriptomic analysis comparing stay-green and senescent Sorghum bicolor lines identifies a role for proline biosynthesis in the stay-green trait Johnson, Stephanie M.; Cummins, Ian; Lim, Fei Ling Journal of Experimental Botany, Vol. 66, Issue 22 https://doi.org/10.1093/jxb/erv405	journal	August 2015
Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis MacLean, Allyson M.; Bravo, Armando; Harrison, Maria J. The Plant Cell, Vol. 29, Issue 10 https://doi.org/10.1105/tpc.17.00555	journal	August 2017
The effect of drought and heat stress on reproductive processes in cereals BarnabÁS, BeÁTa; JÄGer, Katalin; FehÉR, Attila Plant, Cell & Environment, Vol. 0, Issue 0 https://doi.org/10.1111/j.1365-3040.2007.01727.x	journal	October 2007
Stay-green alleles individually enhance grain yield in sorghum under drought by modifying canopy development and water uptake patterns Borrell, Andrew K.; van Oosterom, Erik J.; Mullet, John E. New Phytologist, Vol. 203, Issue 3 https://doi.org/10.1111/nph.12869	journal	June 2014
Alternative oxidase respiration maintains both mitochondrial and chloroplast function during drought Dahal, Keshav; Vanlerberghe, Greg C. New Phytologist, Vol. 213, Issue 2 https://doi.org/10.1111/nph.14169	journal	August 2016
Diverse Sorghum bicolor accessions show marked variation in growth and transcriptional responses to arbuscular mycorrhizal fungi Watts‐Williams, Stephanie J.; Emmett, Bryan D.; Levesque‐Tremblay, Veronique Plant, Cell & Environment, Vol. 42, Issue 5 https://doi.org/10.1111/pce.13509	journal	January 2019
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization McCormick, Ryan F.; Truong, Sandra K.; Sreedasyam, Avinash The Plant Journal, Vol. 93, Issue 2 https://doi.org/10.1111/tpj.13781	journal	December 2017
Predisposition in Plant Disease: Exploiting the Nexus in Abiotic and Biotic Stress Perception and Response Bostock, Richard M.; Pye, Matthew F.; Roubtsova, Tatiana V. Annual Review of Phytopathology, Vol. 52, Issue 1 https://doi.org/10.1146/annurev-phyto-081211-172902	journal	August 2014
Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE Fracasso, Alessandra; Trindade, Luisa M.; Amaducci, Stefano BMC Plant Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s12870-016-0800-x	journal	May 2016
Two Transcription Factors, DREB1 and DREB2, with an EREBP/AP2 DNA Binding Domain Separate Two Cellular Signal Transduction Pathways in Drought- and Low-Temperature-Responsive Gene Expression, Respectively, in Arabidopsis Liu, Qiang; Kasuga, Mie; Sakuma, Yoh The Plant Cell, Vol. 10, Issue 8 https://doi.org/10.2307/3870648	journal	August 1998
Mycorrhizal Fungi Smith, S. E. CRC Critical Reviews in Microbiology, Vol. 3, Issue 3 https://doi.org/10.3109/10408417409108753	journal	January 1974
Nitric Oxide Ameliorates Zinc Oxide Nanoparticles Phytotoxicity in Wheat Seedlings: Implication of the Ascorbate–Glutathione Cycle Tripathi, Durgesh K.; Mishra, Rohit K.; Singh, Swati Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.00001	journal	February 2017
Overexpression of Ferredoxin, PETF, Enhances Tolerance to Heat Stress in Chlamydomonas reinhardtii Lin, Yi-Hsien; Pan, Kui-You; Hung, Ching-Hui International Journal of Molecular Sciences, Vol. 14, Issue 10 https://doi.org/10.3390/ijms141020913	journal	October 2013
Over-represented promoter motifs in abiotic stress-induced DREB genes of rice and sorghum and their probable role in regulation of gene expression Srivasta, Amrita; Mehta, Sameet; Lindlof, Angelica Plant Signaling & Behavior, Vol. 5, Issue 7 https://doi.org/10.4161/psb.5.7.11769	journal	July 2010

Cited By (3)

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics Gao, Cheng; Montoya, Liliam; Xu, Ling Nature Communications, Vol. 11, Issue 1 https://doi.org/10.1038/s41467-019-13913-9	journal	January 2020
Multidisciplinary Education for Oxygen Prescription Cook, Deborah J. Archives of Internal Medicine, Vol. 156, Issue 16 https://doi.org/10.1001/archinte.1996.00440150043004	journal	September 1996
Sorghum’s Whole-Plant Transcriptome and Proteome Responses to Drought Stress: A Review Ngara, Rudo; Goche, Tatenda; Swanevelder, Dirk Z. H. Life, Vol. 11, Issue 7 https://doi.org/10.3390/life11070704	journal	July 2021

Similar Records

Distinct Preflowering Drought Tolerance Strategies of Sorghum bicolor Genotype RTx430 Revealed by Subcellular Protein Profiling

Journal Article · 2020 · International Journal of Molecular Sciences (Online) · OSTI ID:1755918

Ogden, Aaron J.; Abdali, Shadan; Engbrecht, Kristin M.; +2 more

Metabolomic, photoprotective, and photosynthetic acclimatory responses to post-flowering drought in sorghum

Journal Article · 2023 · Plant Direct · OSTI ID:2205557

Baker, Christopher R.; Patel‐Tupper, Dhruv; Cole, Benjamin J.; +17 more

Morphogene-assisted transformation of Sorghum bicolor allows more efficient genome editing

Journal Article · 2021 · Plant Biotechnology Journal · OSTI ID:1904458

Aregawi, Kiflom; Shen, Jianqiang; Pierroz, Grady; +4 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
54 ENVIRONMENTAL SCIENCES
Drought
RNA-Seq
S. bicolorarbuscular mycorrhizal fungi

Title: Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

Citation Formats

References (78)

Cited By (3)

Similar Records

Related Subjects