Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots

Liu, Wen; Huang, Liuqin; Komorek, Rachel; Handakumbura, Pubudu P.; Zhou, Yadong; Hu, Dehong; Engelhard, Mark H.; Jiang, Hongchen; Yu, Xiao-Ying; Jansson, Christer; Zhu, Zihua

doi:10.1039/C9AN01954E

Title: Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots

Abstract

A universal sample holder allows correlative imaging analysis of plant roots to reveal chemical signatures for bacterial hotspots.

Authors:

Liu, Wen ^[1];

^[1]; Komorek, Rachel ^[2]; Handakumbura, Pubudu P. ^[3]; Zhou, Yadong ^[3];

^[3];

^[4];

^[2]; Jansson, Christer ^[3];

^[3]

Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA, State Key Laboratory of Biogeology and Environmental Geology
Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, USA
Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA
State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China

Publication Date:: 2020-01-20

Sponsoring Org.:: USDOE

OSTI Identifier:: 1576684

Grant/Contract Number:: 22142

Resource Type:: Publisher's Accepted Manuscript

Journal Name:: Analyst

Additional Journal Information:: Journal Name: Analyst Journal Volume: 145 Journal Issue: 2; Journal ID: ISSN 0003-2654

Publisher:: Royal Society of Chemistry (RSC)

Country of Publication:: United Kingdom

Language:: English

Citation Formats


                    Liu, Wen, Huang, Liuqin, Komorek, Rachel, Handakumbura, Pubudu P., Zhou, Yadong, Hu, Dehong, Engelhard, Mark H., Jiang, Hongchen, Yu, Xiao-Ying, Jansson, Christer, and Zhu, Zihua. Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots.  United Kingdom: N. p., 2020. 
Web.  doi:10.1039/C9AN01954E.

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                    Liu, Wen, Huang, Liuqin, Komorek, Rachel, Handakumbura, Pubudu P., Zhou, Yadong, Hu, Dehong, Engelhard, Mark H., Jiang, Hongchen, Yu, Xiao-Ying, Jansson, Christer, & Zhu, Zihua. Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots.  United Kingdom.  https://doi.org/10.1039/C9AN01954E

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                    Liu, Wen, Huang, Liuqin, Komorek, Rachel, Handakumbura, Pubudu P., Zhou, Yadong, Hu, Dehong, Engelhard, Mark H., Jiang, Hongchen, Yu, Xiao-Ying, Jansson, Christer, and Zhu, Zihua. Mon .  
"Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots".  United Kingdom.  https://doi.org/10.1039/C9AN01954E.

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@article{osti_1576684,

  title        = {Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots},

  author       = {Liu, Wen and Huang, Liuqin and Komorek, Rachel and Handakumbura, Pubudu P. and Zhou, Yadong and Hu, Dehong and Engelhard, Mark H. and Jiang, Hongchen and Yu, Xiao-Ying and Jansson, Christer and Zhu, Zihua},

  abstractNote = {A universal sample holder allows correlative imaging analysis of plant roots to reveal chemical signatures for bacterial hotspots.},

  doi          = {10.1039/C9AN01954E},

  journal      = {Analyst},

  number       = 2,

  volume       = 145,

  place        = {United Kingdom},

  year         = {2020},

  month        = {1}

}

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Title: Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots

Abstract

Citation Formats

Challenges and Approaches in Microbiome Research: From Fundamental to Applied journal, August 2018

Trees harness the power of microbes to survive climate change journal, October 2017

Adaptation of Pseudomonas fluorescens to the plant rhizosphere journal, June 1999

Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation journal, July 2018

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Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers journal, July 2013

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The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere journal, December 2018

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Multivariate Analysis of ToF-SIMS Data from Multicomponent Systems: The Why, When, and How journal, December 2012

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Challenges and Approaches in Microbiome Research: From Fundamental to Applied
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Adaptation of Pseudomonas fluorescens to the plant rhizosphere
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Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation
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The role of root Exudates in Rhizosphere Interactions with Plants and Other Organisms
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Brachypodium : A Monocot Grass Model Genus for Plant Biology
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Plant growth-promoting bacteria as inoculants in agricultural soils
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Chemical Analysis of Inorganic and Organic Surfaces and Thin Films by Static Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS)
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Unique Organic Matter and Microbial Properties in the Rhizosphere of a Wetland Soil
journal, April 2016

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Infection of Brachypodium distachyon by Formae Speciales of Puccinia graminis: Early Infection Events and Host-Pathogen Incompatibility
journal, February 2013

Growth promotion and yield enhancement of peanut (Arachis hypogaea L.) by application of plant growth-promoting rhizobacteria
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Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers
journal, July 2013

Mineral protection of soil carbon counteracted by root exudates
journal, March 2015

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture
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Brachypodium as a Model for the Grasses: Today and the Future
journal, July 2011

Mechanisms and Practical Considerations Involved in Plant Growth Promotion by Rhizobacteria
journal, January 2010

Efficient rhizosphere colonization by Pseudomonas fluorescens f113 mutants unable to form biofilms on abiotic surfaces: Biofilm formation and rhizosphere colonization
journal, December 2010

More than rhizosphere colonization of strawberry plants by Azospirillum brasilense
journal, October 2012

Brachypodium as an emerging model for cereal–pathogen interactions
journal, March 2015

Molecular evidence of a toxic effect on a biofilm and its matrix
journal, January 2019

Nanometer-Scale Chemistry of a Calcite Biomineralization Template: Implications for Skeletal Composition and Nucleation
journal, October 2016

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere
journal, December 2018

Rhizosphere bacteria help plants tolerate abiotic stress
journal, January 2009

In Situ Molecular Imaging of the Biofilm and Its Matrix
journal, October 2016

Mechanisms and applications of plant growth promoting rhizobacteria: Current perspective
journal, January 2014

In situ molecular imaging of a hydrated biofilm in a microfluidic reactor by ToF-SIMS
journal, January 2014

Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability—A Review
journal, April 2016

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research
journal, August 2017

Comparison of plant growth-promotion with Pseudomonas aeruginosa and Bacillus subtilis in three vegetables
journal, January 2008

Enhanced plant growth by siderophores produced by plant growth-promoting rhizobacteria
journal, August 1980

Research priorities for harnessing plant microbiomes in sustainable agriculture
journal, March 2017

The plant growth-promoting effect of the nitrogen-fixing endophyte Pseudomonas stutzeri A15
journal, January 2017

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization
journal, May 2010

Brachypodium distachyon: making hay with a wild grass
journal, April 2008

Brachypodium distachyon – Cochliobolus sativus Pathosystem is a New Model for Studying Plant–Fungal Interactions in Cereal Crops
journal, April 2015

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journal, September 2009

Multivariate Analysis of ToF-SIMS Data from Multicomponent Systems: The Why, When, and How
journal, December 2012

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
journal, June 2016

Rhizosphere priming effects on soil carbon and nitrogen mineralization
journal, September 2014