Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots

doi:10.1039/C9AN01954E

Title: Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots

Abstract

A universal sample holder allows correlative imaging analysis of plant roots to reveal chemical signatures for bacterial hotspots.

Authors:

Liu, Wen ^[1];

^[1]; Komorek, Rachel ^[2]; Handakumbura, Pubudu P. ^[3]; Zhou, Yadong ^[3];

^[3];

^[4];

^[2]; Jansson, Christer ^[3];

^[3]

Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA, State Key Laboratory of Biogeology and Environmental Geology
Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, USA
Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, USA
State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, China

Publication Date:: 2020-01-20

Sponsoring Org.:: USDOE

OSTI Identifier:: 1576684

Grant/Contract Number:: 22142

Resource Type:: Publisher's Accepted Manuscript

Journal Name:: Analyst

Additional Journal Information:: Journal Name: Analyst Journal Volume: 145 Journal Issue: 2; Journal ID: ISSN 0003-2654

Publisher:: Royal Society of Chemistry (RSC)

Country of Publication:: United Kingdom

Language:: English

Citation Formats


                    Liu, Wen, Huang, Liuqin, Komorek, Rachel, Handakumbura, Pubudu P., Zhou, Yadong, Hu, Dehong, Engelhard, Mark H., Jiang, Hongchen, Yu, Xiao-Ying, Jansson, Christer, and Zhu, Zihua. Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots.  United Kingdom: N. p., 2020. 
        Web.  doi:10.1039/C9AN01954E.

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                    Liu, Wen, Huang, Liuqin, Komorek, Rachel, Handakumbura, Pubudu P., Zhou, Yadong, Hu, Dehong, Engelhard, Mark H., Jiang, Hongchen, Yu, Xiao-Ying, Jansson, Christer, & Zhu, Zihua. Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots.  United Kingdom.  doi:10.1039/C9AN01954E.

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                    Liu, Wen, Huang, Liuqin, Komorek, Rachel, Handakumbura, Pubudu P., Zhou, Yadong, Hu, Dehong, Engelhard, Mark H., Jiang, Hongchen, Yu, Xiao-Ying, Jansson, Christer, and Zhu, Zihua. Mon .  
        "Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots".  United Kingdom.  doi:10.1039/C9AN01954E.

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@article{osti_1576684,

  title        = {Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots},

  author       = {Liu, Wen and Huang, Liuqin and Komorek, Rachel and Handakumbura, Pubudu P. and Zhou, Yadong and Hu, Dehong and Engelhard, Mark H. and Jiang, Hongchen and Yu, Xiao-Ying and Jansson, Christer and Zhu, Zihua},

  abstractNote = {A universal sample holder allows correlative imaging analysis of plant roots to reveal chemical signatures for bacterial hotspots.},

  doi          = {10.1039/C9AN01954E},

  journal      = {Analyst},

  number       = 2,

  volume       = 145,

  place        = {United Kingdom},

  year         = {2020},

  month        = {1}

}

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DOI: 10.1039/C9AN01954E

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Works referenced in this record:

Challenges and Approaches in Microbiome Research: From Fundamental to Applied
journal, August 2018

Sergaki, Chrysi; Lagunas, Beatriz; Lidbury, Ian
Frontiers in Plant Science, Vol. 9
DOI: 10.3389/fpls.2018.01205

Trees harness the power of microbes to survive climate change
journal, October 2017

Lau, Jennifer A.; Lennon, Jay T.; Heath, Katy D.
Proceedings of the National Academy of Sciences, Vol. 114, Issue 42
DOI: 10.1073/pnas.1715417114

Adaptation of Pseudomonas fluorescens to the plant rhizosphere
journal, June 1999

Rainey, Paul B.
Environmental Microbiology, Vol. 1, Issue 3
DOI: 10.1046/j.1462-2920.1999.00040.x

Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation
journal, July 2018

Costa, Ohana Y. A.; Raaijmakers, Jos M.; Kuramae, Eiko E.
Frontiers in Microbiology, Vol. 9
DOI: 10.3389/fmicb.2018.01636

The role of root Exudates in Rhizosphere Interactions with Plants and Other Organisms
journal, June 2006

Bais, Harsh P.; Weir, Tiffany L.; Perry, Laura G.
Annual Review of Plant Biology, Vol. 57, Issue 1
DOI: 10.1146/annurev.arplant.57.032905.105159

Brachypodium : A Monocot Grass Model Genus for Plant Biology
journal, July 2018

Scholthof, Karen-Beth G.; Irigoyen, Sonia; Catalan, Pilar
The Plant Cell, Vol. 30, Issue 8
DOI: 10.1105/tpc.18.00083

Plant growth-promoting bacteria as inoculants in agricultural soils
journal, November 2015

Souza, Rocheli de; Ambrosini, Adriana; Passaglia, Luciane M. P.
Genetics and Molecular Biology, Vol. 38, Issue 4
DOI: 10.1590/S1415-475738420150053

Chemical Analysis of Inorganic and Organic Surfaces and Thin Films by Static Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS)
journal, June 1994

Benninghoven, Alfred
Angewandte Chemie International Edition in English, Vol. 33, Issue 10
DOI: 10.1002/anie.199410231

Unique Organic Matter and Microbial Properties in the Rhizosphere of a Wetland Soil
journal, April 2016

Kaplan, Daniel I.; Xu, Chen; Huang, Shan
Environmental Science & Technology, Vol. 50, Issue 8
DOI: 10.1021/acs.est.5b05165

Information from complexity: Challenges of TOF-SIMS data interpretation
journal, July 2006

Graham, Daniel J.; Wagner, Matthew S.; Castner, David G.
Applied Surface Science, Vol. 252, Issue 19
DOI: 10.1016/j.apsusc.2006.02.149

Rhizosphere engineering: Enhancing sustainable plant ecosystem productivity
journal, June 2017

Ahkami, Amir H.; Allen White, Richard; Handakumbura, Pubudu P.
Rhizosphere, Vol. 3
DOI: 10.1016/j.rhisph.2017.04.012

Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria
journal, February 2016

do Amaral, Fernanda P.; Pankievicz, Vânia C. S.; Arisi, Ana Carolina M.
Plant Molecular Biology, Vol. 90, Issue 6
DOI: 10.1007/s11103-016-0449-8

Infection of Brachypodium distachyon by Formae Speciales of Puccinia graminis: Early Infection Events and Host-Pathogen Incompatibility
journal, February 2013

Figueroa, Melania; Alderman, Stephen; Garvin, David F.
PLoS ONE, Vol. 8, Issue 2
DOI: 10.1371/journal.pone.0056857

Growth promotion and yield enhancement of peanut (Arachis hypogaea L.) by application of plant growth-promoting rhizobacteria
journal, December 2004

Dey, R.; Pal, K. K.; Bhatt, D. M.
Microbiological Research, Vol. 159, Issue 4
DOI: 10.1016/j.micres.2004.08.004

Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers
journal, July 2013

Douché, Thibaut; Clemente, Hélène San; Burlat, Vincent
PROTEOMICS, Vol. 13, Issue 16
DOI: 10.1002/pmic.201200507

Mineral protection of soil carbon counteracted by root exudates
journal, March 2015

Keiluweit, Marco; Bougoure, Jeremy J.; Nico, Peter S.
Nature Climate Change, Vol. 5, Issue 6
DOI: 10.1038/nclimate2580

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture
journal, July 2009

Berg, Gabriele
Applied Microbiology and Biotechnology, Vol. 84, Issue 1
DOI: 10.1007/s00253-009-2092-7

Brachypodium as a Model for the Grasses: Today and the Future
journal, July 2011

Brkljacic, Jelena; Grotewold, Erich; Scholl, Randy
Plant Physiology, Vol. 157, Issue 1
DOI: 10.1104/pp.111.179531

Mechanisms and Practical Considerations Involved in Plant Growth Promotion by Rhizobacteria
journal, January 2010

Martínez-Viveros, O.; Jorquera, M. A.; Crowley, D. E.
Journal of soil science and plant nutrition, Vol. 10, Issue 3
DOI: 10.4067/S0718-95162010000100006

Efficient rhizosphere colonization by Pseudomonas fluorescens f113 mutants unable to form biofilms on abiotic surfaces: Biofilm formation and rhizosphere colonization
journal, December 2010

Barahona, Emma; Navazo, Ana; Yousef-Coronado, Fátima
Environmental Microbiology, Vol. 12, Issue 12
DOI: 10.1111/j.1462-2920.2010.02291.x

More than rhizosphere colonization of strawberry plants by Azospirillum brasilense
journal, October 2012

Guerrero-Molina, María F.; Winik, Beatriz C.; Pedraza, Raúl O.
Applied Soil Ecology, Vol. 61
DOI: 10.1016/j.apsoil.2011.10.011

Brachypodium as an emerging model for cereal–pathogen interactions
journal, March 2015

Fitzgerald, Timothy L.; Powell, Jonathan J.; Schneebeli, Katharina
Annals of Botany, Vol. 115, Issue 5
DOI: 10.1093/aob/mcv010

Molecular evidence of a toxic effect on a biofilm and its matrix
journal, January 2019

Ding, Yuanzhao; Zhou, Yufan; Yao, Juan
The Analyst, Vol. 144, Issue 8
DOI: 10.1039/C8AN02512F

Nanometer-Scale Chemistry of a Calcite Biomineralization Template: Implications for Skeletal Composition and Nucleation
journal, October 2016

Branson, Oscar; Bonnin, Elisa A.; Perea, Daniel E.
Proceedings of the National Academy of Sciences, Vol. 113, Issue 46
DOI: 10.1073/pnas.1522864113

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere
journal, December 2018

Yu, Peng; Hochholdinger, Frank
Frontiers in Plant Science, Vol. 9
DOI: 10.3389/fpls.2018.01896

Rhizosphere bacteria help plants tolerate abiotic stress
journal, January 2009

Yang, Jungwook; Kloepper, Joseph W.; Ryu, Choong-Min
Trends in Plant Science, Vol. 14, Issue 1
DOI: 10.1016/j.tplants.2008.10.004

In Situ Molecular Imaging of the Biofilm and Its Matrix
journal, October 2016

Ding, Yuanzhao; Zhou, Yufan; Yao, Juan
Analytical Chemistry, Vol. 88, Issue 22
DOI: 10.1021/acs.analchem.6b03909

Mechanisms and applications of plant growth promoting rhizobacteria: Current perspective
journal, January 2014

Ahemad, Munees; Kibret, Mulugeta
Journal of King Saud University - Science, Vol. 26, Issue 1
DOI: 10.1016/j.jksus.2013.05.001

In situ molecular imaging of a hydrated biofilm in a microfluidic reactor by ToF-SIMS
journal, January 2014

Hua, Xin; Yu, Xiao-Ying; Wang, Zhaoying
The Analyst, Vol. 139, Issue 7
DOI: 10.1039/C3AN02262E

Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability—A Review
journal, April 2016

Vejan, Pravin; Abdullah, Rosazlin; Khadiran, Tumirah
Molecules, Vol. 21, Issue 5
DOI: 10.3390/molecules21050573

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research
journal, August 2017

Vorholt, Julia A.; Vogel, Christine; Carlström, Charlotte I.
Cell Host & Microbe, Vol. 22, Issue 2
DOI: 10.1016/j.chom.2017.07.004

Comparison of plant growth-promotion with Pseudomonas aeruginosa and Bacillus subtilis in three vegetables
journal, January 2008

Adesemoye, A. O.; Obini, M.; Ugoji, E. O.
Brazilian Journal of Microbiology, Vol. 39, Issue 3
DOI: 10.1590/S1517-83822008000300003

Enhanced plant growth by siderophores produced by plant growth-promoting rhizobacteria
journal, August 1980

Kloepper, Joseph W.; Leong, John; Teintze, Martin
Nature, Vol. 286, Issue 5776
DOI: 10.1038/286885a0

Research priorities for harnessing plant microbiomes in sustainable agriculture
journal, March 2017

Busby, Posy E.; Soman, Chinmay; Wagner, Maggie R.
PLOS Biology, Vol. 15, Issue 3
DOI: 10.1371/journal.pbio.2001793

The plant growth-promoting effect of the nitrogen-fixing endophyte Pseudomonas stutzeri A15
journal, January 2017

Pham, Van T. K.; Rediers, Hans; Ghequire, Maarten G. K.
Archives of Microbiology, Vol. 199, Issue 3
DOI: 10.1007/s00203-016-1332-3

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization
journal, May 2010

Compant, Stéphane; Clément, Christophe; Sessitsch, Angela
Soil Biology and Biochemistry, Vol. 42, Issue 5
DOI: 10.1016/j.soilbio.2009.11.024

Brachypodium distachyon: making hay with a wild grass
journal, April 2008

Opanowicz, Magdalena; Vain, Philippe; Draper, John
Trends in Plant Science, Vol. 13, Issue 4
DOI: 10.1016/j.tplants.2008.01.007

Brachypodium distachyon – Cochliobolus sativus Pathosystem is a New Model for Studying Plant–Fungal Interactions in Cereal Crops
journal, April 2015

Zhong, Shaobin; Ali, Shaukat; Leng, Yueqiang
Phytopathology, Vol. 105, Issue 4
DOI: 10.1094/PHYTO-08-14-0214-R

Plant growth promotion by phosphate solubilizing bacteria
journal, September 2009

Zaidi, A.; Khan, M.; Ahemad, M.
Acta Microbiologica et Immunologica Hungarica, Vol. 56, Issue 3
DOI: 10.1556/AMicr.56.2009.3.6

Multivariate Analysis of ToF-SIMS Data from Multicomponent Systems: The Why, When, and How
journal, December 2012

Graham, Daniel J.; Castner, David G.
Biointerphases, Vol. 7, Issue 1
DOI: 10.1007/s13758-012-0049-3

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
journal, June 2016

Shi, Shengjing; Nuccio, Erin E.; Shi, Zhou J.
Ecology Letters, Vol. 19, Issue 8
DOI: 10.1111/ele.12630

Rhizosphere priming effects on soil carbon and nitrogen mineralization
journal, September 2014

Zhu, Biao; Gutknecht, Jessica L. M.; Herman, Donald J.
Soil Biology and Biochemistry, Vol. 76
DOI: 10.1016/j.soilbio.2014.04.033

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Title: Correlative surface imaging reveals chemical signatures for bacterial hotspots on plant roots

Abstract

Citation Formats

Challenges and Approaches in Microbiome Research: From Fundamental to Applied journal, August 2018

Trees harness the power of microbes to survive climate change journal, October 2017

Adaptation of Pseudomonas fluorescens to the plant rhizosphere journal, June 1999

Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation journal, July 2018

The role of root Exudates in Rhizosphere Interactions with Plants and Other Organisms journal, June 2006

Brachypodium : A Monocot Grass Model Genus for Plant Biology journal, July 2018

Plant growth-promoting bacteria as inoculants in agricultural soils journal, November 2015

Chemical Analysis of Inorganic and Organic Surfaces and Thin Films by Static Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS) journal, June 1994

Unique Organic Matter and Microbial Properties in the Rhizosphere of a Wetland Soil journal, April 2016

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Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria journal, February 2016

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Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers journal, July 2013

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Brachypodium as a Model for the Grasses: Today and the Future journal, July 2011

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Brachypodium as an emerging model for cereal–pathogen interactions journal, March 2015

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Nanometer-Scale Chemistry of a Calcite Biomineralization Template: Implications for Skeletal Composition and Nucleation journal, October 2016

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere journal, December 2018

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In Situ Molecular Imaging of the Biofilm and Its Matrix journal, October 2016

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Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability—A Review journal, April 2016

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research journal, August 2017

Comparison of plant growth-promotion with Pseudomonas aeruginosa and Bacillus subtilis in three vegetables journal, January 2008

Enhanced plant growth by siderophores produced by plant growth-promoting rhizobacteria journal, August 1980

Research priorities for harnessing plant microbiomes in sustainable agriculture journal, March 2017

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Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization journal, May 2010

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Multivariate Analysis of ToF-SIMS Data from Multicomponent Systems: The Why, When, and How journal, December 2012

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages journal, June 2016

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Challenges and Approaches in Microbiome Research: From Fundamental to Applied
journal, August 2018

Trees harness the power of microbes to survive climate change
journal, October 2017

Adaptation of Pseudomonas fluorescens to the plant rhizosphere
journal, June 1999

Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation
journal, July 2018

The role of root Exudates in Rhizosphere Interactions with Plants and Other Organisms
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Brachypodium : A Monocot Grass Model Genus for Plant Biology
journal, July 2018

Plant growth-promoting bacteria as inoculants in agricultural soils
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Chemical Analysis of Inorganic and Organic Surfaces and Thin Films by Static Time-of-Flight Secondary Ion Mass Spectrometry (TOF-SIMS)
journal, June 1994

Unique Organic Matter and Microbial Properties in the Rhizosphere of a Wetland Soil
journal, April 2016

Information from complexity: Challenges of TOF-SIMS data interpretation
journal, July 2006

Rhizosphere engineering: Enhancing sustainable plant ecosystem productivity
journal, June 2017

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journal, February 2016

Infection of Brachypodium distachyon by Formae Speciales of Puccinia graminis: Early Infection Events and Host-Pathogen Incompatibility
journal, February 2013

Growth promotion and yield enhancement of peanut (Arachis hypogaea L.) by application of plant growth-promoting rhizobacteria
journal, December 2004

Brachypodium distachyon as a model plant toward improved biofuel crops: Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers
journal, July 2013

Mineral protection of soil carbon counteracted by root exudates
journal, March 2015

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture
journal, July 2009

Brachypodium as a Model for the Grasses: Today and the Future
journal, July 2011

Mechanisms and Practical Considerations Involved in Plant Growth Promotion by Rhizobacteria
journal, January 2010

Efficient rhizosphere colonization by Pseudomonas fluorescens f113 mutants unable to form biofilms on abiotic surfaces: Biofilm formation and rhizosphere colonization
journal, December 2010

More than rhizosphere colonization of strawberry plants by Azospirillum brasilense
journal, October 2012

Brachypodium as an emerging model for cereal–pathogen interactions
journal, March 2015

Molecular evidence of a toxic effect on a biofilm and its matrix
journal, January 2019

Nanometer-Scale Chemistry of a Calcite Biomineralization Template: Implications for Skeletal Composition and Nucleation
journal, October 2016

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere
journal, December 2018

Rhizosphere bacteria help plants tolerate abiotic stress
journal, January 2009

In Situ Molecular Imaging of the Biofilm and Its Matrix
journal, October 2016

Mechanisms and applications of plant growth promoting rhizobacteria: Current perspective
journal, January 2014

In situ molecular imaging of a hydrated biofilm in a microfluidic reactor by ToF-SIMS
journal, January 2014

Role of Plant Growth Promoting Rhizobacteria in Agricultural Sustainability—A Review
journal, April 2016

Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research
journal, August 2017

Comparison of plant growth-promotion with Pseudomonas aeruginosa and Bacillus subtilis in three vegetables
journal, January 2008

Enhanced plant growth by siderophores produced by plant growth-promoting rhizobacteria
journal, August 1980

Research priorities for harnessing plant microbiomes in sustainable agriculture
journal, March 2017

The plant growth-promoting effect of the nitrogen-fixing endophyte Pseudomonas stutzeri A15
journal, January 2017

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization
journal, May 2010

Brachypodium distachyon: making hay with a wild grass
journal, April 2008

Brachypodium distachyon – Cochliobolus sativus Pathosystem is a New Model for Studying Plant–Fungal Interactions in Cereal Crops
journal, April 2015

Plant growth promotion by phosphate solubilizing bacteria
journal, September 2009

Multivariate Analysis of ToF-SIMS Data from Multicomponent Systems: The Why, When, and How
journal, December 2012

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
journal, June 2016

Rhizosphere priming effects on soil carbon and nitrogen mineralization
journal, September 2014