Pyrogenic organic matter effects on soil bacterial community composition

Woolet, Jamie; Whitman, Thea

doi:10.1016/j.soilbio.2019.107678

Title: Pyrogenic organic matter effects on soil bacterial community composition

Authors:

Woolet, Jamie;

Publication Date:: 2020-02-01

Sponsoring Org.:: USDOE

OSTI Identifier:: 1575797

Resource Type:: Published Article

Journal Name:: Soil Biology and Biochemistry

Additional Journal Information:: Journal Name: Soil Biology and Biochemistry Journal Volume: 141 Journal Issue: C; Journal ID: ISSN 0038-0717

Publisher:: Elsevier

Country of Publication:: United Kingdom

Language:: English

Citation Formats


                    Woolet, Jamie, and Whitman, Thea. Pyrogenic organic matter effects on soil bacterial community composition.  United Kingdom: N. p., 2020. 
Web.  doi:10.1016/j.soilbio.2019.107678.

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                    Woolet, Jamie, & Whitman, Thea. Pyrogenic organic matter effects on soil bacterial community composition.  United Kingdom.  https://doi.org/10.1016/j.soilbio.2019.107678

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                    Woolet, Jamie, and Whitman, Thea. Sat .  
"Pyrogenic organic matter effects on soil bacterial community composition".  United Kingdom.  https://doi.org/10.1016/j.soilbio.2019.107678.

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@article{osti_1575797,

  title        = {Pyrogenic organic matter effects on soil bacterial community composition},

  author       = {Woolet, Jamie and Whitman, Thea},

  abstractNote = {},

  doi          = {10.1016/j.soilbio.2019.107678},

  journal      = {Soil Biology and Biochemistry},

  number       = C,

  volume       = 141,

  place        = {United Kingdom},

  year         = {2020},

  month        = {2}

}

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Works referenced in this record:

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Pyrogenic organic matter effects on soil bacterial community composition

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Title: Pyrogenic organic matter effects on soil bacterial community composition

Citation Formats

Short term soil priming effects and the mineralisation of biochar following its incorporation to soils of different pH journal, November 2011

Pyrogenic carbon additions to soil counteract positive priming of soil carbon mineralization by plants journal, June 2014

Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics journal, June 2005

Biochar stability in soil: meta-analysis of decomposition and priming effects journal, June 2015

An Ordination of the Upland Forest Communities of Southern Wisconsin journal, February 1957

Bacterial composition of soils in ponderosa pine and mixed conifer forests exposed to different wildfire burn severity journal, February 2014

Post-fire vegetative dynamics as drivers of microbial community structure and function in forest soils journal, December 2005

The effects of biochar and compost amendments on copper immobilization and soil microorganisms in a temperate vineyard journal, March 2015

Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter journal, April 2016

The Growth of Bacteria in a Charcoal-Cellophane System journal, January 1951

Soil bacterial and fungal response to wildfires in the Canadian boreal forest across a burn severity gradient journal, November 2019

Bacterial Community Composition Associated with Pyrogenic Organic Matter (Biochar) Varies with Pyrolysis Temperature and Colonization Environment journal, March 2017

BBMerge – Accurate paired shotgun read merging via overlap journal, October 2017

Effects of fire on properties of forest soils: a review journal, February 2005

A meta-analysis on pyrogenic organic matter induced priming effect journal, June 2014

Wildfire effects on the properties and microbial community structure of organic horizon soils in the New Jersey Pinelands journal, July 2015

Changes of bacterial community compositions after three years of biochar application in a black soil of northeast China journal, May 2017

Life in the ‘charosphere’ – Does biochar in agricultural soil provide a significant habitat for microorganisms? journal, October 2013

Characterization of biochars to evaluate recalcitrance and agronomic performance journal, June 2012

Physico-chemical properties and microbial responses in biochar-amended soils: Mechanisms and future directions journal, August 2015

Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity journal, December 2017

Biochar increases plant growth and alters microbial communities via regulating the moisture and temperature of green roof substrates journal, September 2018

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data journal, April 2013

Importance of Rhodococcus strains in a bacterial consortium degrading a mixture of hydrocarbons, gasoline, and diesel oil additives revealed by metatranscriptomic analysis journal, October 2014

The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils journal, July 2017

Dynamic Effects of Biochar on the Bacterial Community Structure in Soil Contaminated with Polycyclic Aromatic Hydrocarbons journal, August 2017

How Large Are Your G -Values? Try Gosset’s Guinnessometrics When a Little “ p ” Is Not Enough journal, March 2019

Antigenic Hemophilus Pertussis Vaccines Grown on Charcoal Agar journal, July 1953

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools journal, November 2012

Soil bacterial and fungal communities across a pH gradient in an arable soil journal, May 2010

Metagenomic Assessment of the Potential Microbial Nitrogen Pathways in the Rhizosphere of a Mediterranean Forest After a Wildfire journal, March 2015

Charcoal as a habitat for microbes and its effect on the microbial community of the underlying humus journal, May 2000

Biochar projects for mitigating climate change: an investigation of critical methodology issues for carbon accounting journal, October 2010

Effect of biochar additions to soil on nitrogen leaching, microbial biomass and bacterial community structure journal, May 2016

Biochemical and Genetic Characterization oftrans-2′-Carboxybenzalpyruvate Hydratase-Aldolase from a Phenanthrene-Degrading Nocardioides Strain journal, February 1998

Biochar as a tool to Reduce the Agricultural Greenhouse-Gas Burden – Knowns, Unknowns and Future Research Needs journal, June 2017

DADA2: High-resolution sample inference from Illumina amplicon data journal, May 2016

Biochar effects on soil biota – A review journal, September 2011

Molecular analysis of the hydrolytic component of petroleum-contaminated soils and of soils remediated with chitin journal, May 2017

Moving to a World Beyond “ p < 0.05” journal, March 2019

Microbial diversity and activity of an aged soil contaminated by polycyclic aromatic hydrocarbons journal, March 2018

Responses of bacterial community and functional marker genes of nitrogen cycling to biochar, compost and combined amendments in soil journal, June 2016

Priming mechanisms with additions of pyrogenic organic matter to soil journal, October 2018

Understanding how microbiomes influence the systems they inhabit journal, August 2018

The effect of various forms of particulate carbon on the growth of the gonococcus and meningococcus journal, July 1939

Effects of Wildfire and Harvest Disturbances on Forest Soil Bacterial Communities journal, November 2007

Modelling the long-term response to positive and negative priming of soil organic carbon by black carbon journal, August 2012

Gasification biochar has limited effects on functional and structural diversity of soil microbial communities in a temperate agroecosystem journal, August 2016

Nitrogenase gene diversity and microbial community structure: a cross-system comparison journal, July 2003

Comparative analysis of the microbial communities in agricultural soil amended with enhanced biochars or traditional fertilisers journal, June 2014

Effects and mechanisms of biochar-microbe interactions in soil improvement and pollution remediation: A review journal, August 2017

The known and the unknown in soil microbial ecology journal, January 2019

The ASA Statement on p -Values: Context, Process, and Purpose journal, April 2016

The way forward in biochar research: targeting trade-offs between the potential wins journal, December 2013

A global atlas of the dominant bacteria found in soil journal, January 2018

Diversity is the question, not the answer journal, September 2016

Controls on black carbon storage in soils: BLACK CARBON IN SOILS journal, July 2007

A quantitative review of the effects of biochar application to soils on crop productivity using meta-analysis journal, November 2011

Predicting pyrogenic organic matter mineralization from its initial properties and implications for carbon management journal, November 2013

A meta-analysis and critical evaluation of influencing factors on soil carbon priming following biochar amendment journal, December 2017

Co-variation in methanotroph community composition and activity in three temperate grassland soils journal, April 2016

Searching for unifying principles in soil ecology journal, November 2009

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 journal, December 2014

Interactions between biochar stability and soil organisms: review and research needs: Biochar stability and soil organisms journal, July 2013

Short term soil priming effects and the mineralisation of biochar following its incorporation to soils of different pH
journal, November 2011

Pyrogenic carbon additions to soil counteract positive priming of soil carbon mineralization by plants
journal, June 2014

Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics
journal, June 2005

Biochar stability in soil: meta-analysis of decomposition and priming effects
journal, June 2015

An Ordination of the Upland Forest Communities of Southern Wisconsin
journal, February 1957

Bacterial composition of soils in ponderosa pine and mixed conifer forests exposed to different wildfire burn severity
journal, February 2014

Post-fire vegetative dynamics as drivers of microbial community structure and function in forest soils
journal, December 2005

The effects of biochar and compost amendments on copper immobilization and soil microorganisms in a temperate vineyard
journal, March 2015

Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter
journal, April 2016

The Growth of Bacteria in a Charcoal-Cellophane System
journal, January 1951

Soil bacterial and fungal response to wildfires in the Canadian boreal forest across a burn severity gradient
journal, November 2019

Bacterial Community Composition Associated with Pyrogenic Organic Matter (Biochar) Varies with Pyrolysis Temperature and Colonization Environment
journal, March 2017

BBMerge – Accurate paired shotgun read merging via overlap
journal, October 2017

Effects of fire on properties of forest soils: a review
journal, February 2005

A meta-analysis on pyrogenic organic matter induced priming effect
journal, June 2014

Wildfire effects on the properties and microbial community structure of organic horizon soils in the New Jersey Pinelands
journal, July 2015

Changes of bacterial community compositions after three years of biochar application in a black soil of northeast China
journal, May 2017

Life in the ‘charosphere’ – Does biochar in agricultural soil provide a significant habitat for microorganisms?
journal, October 2013

Characterization of biochars to evaluate recalcitrance and agronomic performance
journal, June 2012

Physico-chemical properties and microbial responses in biochar-amended soils: Mechanisms and future directions
journal, August 2015

Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity
journal, December 2017

Biochar increases plant growth and alters microbial communities via regulating the moisture and temperature of green roof substrates
journal, September 2018

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
journal, April 2013

Importance of Rhodococcus strains in a bacterial consortium degrading a mixture of hydrocarbons, gasoline, and diesel oil additives revealed by metatranscriptomic analysis
journal, October 2014

The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils
journal, July 2017

Dynamic Effects of Biochar on the Bacterial Community Structure in Soil Contaminated with Polycyclic Aromatic Hydrocarbons
journal, August 2017

How Large Are Your G -Values? Try Gosset’s Guinnessometrics When a Little “ p ” Is Not Enough
journal, March 2019

Antigenic Hemophilus Pertussis Vaccines Grown on Charcoal Agar
journal, July 1953

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
journal, November 2012

Soil bacterial and fungal communities across a pH gradient in an arable soil
journal, May 2010

Metagenomic Assessment of the Potential Microbial Nitrogen Pathways in the Rhizosphere of a Mediterranean Forest After a Wildfire
journal, March 2015

Charcoal as a habitat for microbes and its effect on the microbial community of the underlying humus
journal, May 2000

Biochar projects for mitigating climate change: an investigation of critical methodology issues for carbon accounting
journal, October 2010

Effect of biochar additions to soil on nitrogen leaching, microbial biomass and bacterial community structure
journal, May 2016

Biochemical and Genetic Characterization oftrans-2′-Carboxybenzalpyruvate Hydratase-Aldolase from a Phenanthrene-Degrading Nocardioides Strain
journal, February 1998

Biochar as a tool to Reduce the Agricultural Greenhouse-Gas Burden – Knowns, Unknowns and Future Research Needs
journal, June 2017

DADA2: High-resolution sample inference from Illumina amplicon data
journal, May 2016

Biochar effects on soil biota – A review
journal, September 2011

Molecular analysis of the hydrolytic component of petroleum-contaminated soils and of soils remediated with chitin
journal, May 2017

Moving to a World Beyond “ p < 0.05”
journal, March 2019

Microbial diversity and activity of an aged soil contaminated by polycyclic aromatic hydrocarbons
journal, March 2018

Responses of bacterial community and functional marker genes of nitrogen cycling to biochar, compost and combined amendments in soil
journal, June 2016

Priming mechanisms with additions of pyrogenic organic matter to soil
journal, October 2018

Understanding how microbiomes influence the systems they inhabit
journal, August 2018

The effect of various forms of particulate carbon on the growth of the gonococcus and meningococcus
journal, July 1939

Effects of Wildfire and Harvest Disturbances on Forest Soil Bacterial Communities
journal, November 2007

Modelling the long-term response to positive and negative priming of soil organic carbon by black carbon
journal, August 2012

Gasification biochar has limited effects on functional and structural diversity of soil microbial communities in a temperate agroecosystem
journal, August 2016

Nitrogenase gene diversity and microbial community structure: a cross-system comparison
journal, July 2003

Comparative analysis of the microbial communities in agricultural soil amended with enhanced biochars or traditional fertilisers
journal, June 2014

Effects and mechanisms of biochar-microbe interactions in soil improvement and pollution remediation: A review
journal, August 2017

The known and the unknown in soil microbial ecology
journal, January 2019

The ASA Statement on p -Values: Context, Process, and Purpose
journal, April 2016

The way forward in biochar research: targeting trade-offs between the potential wins
journal, December 2013

A global atlas of the dominant bacteria found in soil
journal, January 2018

Diversity is the question, not the answer
journal, September 2016

Controls on black carbon storage in soils: BLACK CARBON IN SOILS
journal, July 2007

A quantitative review of the effects of biochar application to soils on crop productivity using meta-analysis
journal, November 2011

Predicting pyrogenic organic matter mineralization from its initial properties and implications for carbon management
journal, November 2013

A meta-analysis and critical evaluation of influencing factors on soil carbon priming following biochar amendment
journal, December 2017

Co-variation in methanotroph community composition and activity in three temperate grassland soils
journal, April 2016

Searching for unifying principles in soil ecology
journal, November 2009

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
journal, December 2014

Interactions between biochar stability and soil organisms: review and research needs: Biochar stability and soil organisms
journal, July 2013