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Title: Structure and electronic properties of rare earth DOBDC metal–organic-frameworks

Abstract

In our report, we apply density functional theory (DFT) to investigate rare-earth metal organic frameworks (RE-MOFs), RE123-OH)16(C8O6H4)8(C8O6H5)4 (RE = Y, Eu, Tb, Yb), and characterize the level of theory needed to accurately predict structural and electronic properties in MOF materials with 4f-electrons. A two-step calculation approach of geometry optimization with spin-restricted DFT and large core potential (LCPs), and detailed electronic structures with spin-unrestricted DFT with a full valence potential + Hubbard U correction is investigated. Spin-restricted DFT with LCPs resulted in good agreement between experimental lattice parameters and optimized geometries, while a full valence potential is necessary for accurate representation of the electronic structure. The electronic structure of Eu-DOBDC MOF suggested a strong dependence on the treatment of highly localized 4f-electrons and spin polarization, as well as variation within a range of Hubbard corrections (U = 1–9 eV). For Hubbard corrected spin-unrestricted calculations, a U value of 1–4 eV maintains the non-metallic character of the band gap with slight deviations in f-orbital energetics. When compared with experimentally reported results, the importance of the full valence calculation and the Hubbard correction in correctly predicting the electronic structure is highlighted.

Authors:
ORCiD logo [1]; ORCiD logo [1]; ORCiD logo [1]; ORCiD logo [1]
  1. Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
Publication Date:
Research Org.:
Energy Frontier Research Centers (EFRC) (United States). Center for Understanding and Control of Acid Gas-induced Evolution of Materials for Energy (UNCAGE-ME); Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE National Nuclear Security Administration (NNSA)
OSTI Identifier:
1574447
Alternate Identifier(s):
OSTI ID: 1570052
Report Number(s):
SAND-2019-12496J
Journal ID: ISSN 1463-9076; PPCPFQ; 680399; TRN: US2100017
Grant/Contract Number:  
AC04-94AL85000; SC0012577; NA0003525; UNCAGE-ME Energy Frontier Research Center (EFRC) A; #DE-SC0012577
Resource Type:
Accepted Manuscript
Journal Name:
Physical Chemistry Chemical Physics. PCCP
Additional Journal Information:
Journal Volume: 21; Journal Issue: 41; Journal ID: ISSN 1463-9076
Publisher:
Royal Society of Chemistry
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Vogel, Dayton J., Sava Gallis, Dorina F., Nenoff, Tina M., and Rimsza, Jessica M. Structure and electronic properties of rare earth DOBDC metal–organic-frameworks. United States: N. p., 2019. Web. doi:10.1039/C9CP04038B.
Vogel, Dayton J., Sava Gallis, Dorina F., Nenoff, Tina M., & Rimsza, Jessica M. Structure and electronic properties of rare earth DOBDC metal–organic-frameworks. United States. https://doi.org/10.1039/C9CP04038B
Vogel, Dayton J., Sava Gallis, Dorina F., Nenoff, Tina M., and Rimsza, Jessica M. Fri . "Structure and electronic properties of rare earth DOBDC metal–organic-frameworks". United States. https://doi.org/10.1039/C9CP04038B. https://www.osti.gov/servlets/purl/1574447.
@article{osti_1574447,
title = {Structure and electronic properties of rare earth DOBDC metal–organic-frameworks},
author = {Vogel, Dayton J. and Sava Gallis, Dorina F. and Nenoff, Tina M. and Rimsza, Jessica M.},
abstractNote = {In our report, we apply density functional theory (DFT) to investigate rare-earth metal organic frameworks (RE-MOFs), RE12(μ3-OH)16(C8O6H4)8(C8O6H5)4 (RE = Y, Eu, Tb, Yb), and characterize the level of theory needed to accurately predict structural and electronic properties in MOF materials with 4f-electrons. A two-step calculation approach of geometry optimization with spin-restricted DFT and large core potential (LCPs), and detailed electronic structures with spin-unrestricted DFT with a full valence potential + Hubbard U correction is investigated. Spin-restricted DFT with LCPs resulted in good agreement between experimental lattice parameters and optimized geometries, while a full valence potential is necessary for accurate representation of the electronic structure. The electronic structure of Eu-DOBDC MOF suggested a strong dependence on the treatment of highly localized 4f-electrons and spin polarization, as well as variation within a range of Hubbard corrections (U = 1–9 eV). For Hubbard corrected spin-unrestricted calculations, a U value of 1–4 eV maintains the non-metallic character of the band gap with slight deviations in f-orbital energetics. When compared with experimentally reported results, the importance of the full valence calculation and the Hubbard correction in correctly predicting the electronic structure is highlighted.},
doi = {10.1039/C9CP04038B},
journal = {Physical Chemistry Chemical Physics. PCCP},
number = 41,
volume = 21,
place = {United States},
year = {Fri Oct 11 00:00:00 EDT 2019},
month = {Fri Oct 11 00:00:00 EDT 2019}
}

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Cited by: 20 works
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Figures / Tables:

Figure 1 Figure 1: Periodic 3D structure of activated Eu-DOBDC with a single unit cell centrally located and highlighted by a blue box. Colors: Eu(green), 0(red), C(brown), and H(white)

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Works referenced in this record:

Flexibility in metal-organic framework materials: Impact on sorption properties
journal, August 2005

  • Fletcher, Ashleigh J.; Thomas, K. Mark; Rosseinsky, Matthew J.
  • Journal of Solid State Chemistry, Vol. 178, Issue 8
  • DOI: 10.1016/j.jssc.2005.05.019

Projector augmented-wave method
journal, December 1994


Acid Gas Stability of Zeolitic Imidazolate Frameworks: Generalized Kinetic and Thermodynamic Characteristics
journal, May 2018


Metal–organic frameworks: functional luminescent and photonic materials for sensing applications
journal, January 2017

  • Lustig, William P.; Mukherjee, Soumya; Rudd, Nathan D.
  • Chemical Society Reviews, Vol. 46, Issue 11
  • DOI: 10.1039/C6CS00930A

Assessing Hubbard-corrected AM05+U and PBEsol+U density functionals for strongly correlated oxides CeO 2 and Ce 2 O 3
journal, January 2016

  • Weck, Philippe F.; Kim, Eunja
  • Physical Chemistry Chemical Physics, Vol. 18, Issue 38
  • DOI: 10.1039/C6CP05479J

From ultrasoft pseudopotentials to the projector augmented-wave method
journal, January 1999


Small-Molecule Adsorption in Open-Site Metal–Organic Frameworks: A Systematic Density Functional Theory Study for Rational Design
journal, January 2015

  • Lee, Kyuho; Howe, Joshua D.; Lin, Li-Chiang
  • Chemistry of Materials, Vol. 27, Issue 3, p. 668-678
  • DOI: 10.1021/cm502760q

Electron-energy-loss spectra and the structural stability of nickel oxide: An LSDA+U study
journal, January 1998

  • Dudarev, S. L.; Botton, G. A.; Savrasov, S. Y.
  • Physical Review B, Vol. 57, Issue 3, p. 1505-1509
  • DOI: 10.1103/PhysRevB.57.1505

The magnetic moments and electronic spectra of lanthanide chelates of 2-thenoyltrifluoroacetone
journal, October 1983

  • Hamer, Andrew M.; Livingstone, Stanley E.
  • Transition Metal Chemistry, Vol. 8, Issue 5
  • DOI: 10.1007/BF00620875

Density-functional theory and strong interactions: Orbital ordering in Mott-Hubbard insulators
journal, August 1995


NMR Spectroscopy Reveals Adsorbate Binding Sites in the Metal–Organic Framework UiO-66(Zr)
journal, March 2018

  • Nandy, Aditya; Forse, Alexander C.; Witherspoon, Velencia J.
  • The Journal of Physical Chemistry C, Vol. 122, Issue 15
  • DOI: 10.1021/acs.jpcc.7b12628

Recent advances in gas storage and separation using metal–organic frameworks
journal, March 2018


Biocompatible MOFs with high absolute quantum yield for bioimaging in the second near infrared window
journal, January 2018

  • Sava Gallis, Dorina F.; Butler, Kimberly S.; Rohwer, Lauren E. S.
  • CrystEngComm, Vol. 20, Issue 39
  • DOI: 10.1039/C8CE00909K

Thermoelectric properties for AA- and AB-stacking of a carbon nitride polymorph (C 3 N 4 )
journal, January 2014


Photoelectrical properties and the electronic structure of Tl1−xIn1−xSnxSe2 (x = 0, 0.1, 0.2, 0.25) single crystalline alloys
journal, January 2013

  • Davydyuk, G. E.; Khyzhun, O. Y.; Reshak, A. H.
  • Physical Chemistry Chemical Physics, Vol. 15, Issue 18
  • DOI: 10.1039/c3cp50836f

DFT Calculation of Russell–Saunders Splitting for Lanthanide Ions Doped in Hexagonal (β)-NaYF 4 Nanocrystals
journal, August 2013

  • Yao, Ge; Berry, Mary T.; May, P. Stanley
  • The Journal of Physical Chemistry C, Vol. 117, Issue 33
  • DOI: 10.1021/jp404206e

Efficient MOF-based degradation of organophosphorus compounds in non-aqueous environments
journal, January 2018

  • Sava Gallis, Dorina F.; Harvey, Jacob A.; Pearce, Charles J.
  • Journal of Materials Chemistry A, Vol. 6, Issue 7
  • DOI: 10.1039/C7TA10794C

Ab initiomolecular dynamics for liquid metals
journal, January 1993


Density-functional theory and NiO photoemission spectra
journal, December 1993


On The Density Functional Theory Treatment of Lanthanide Coordination Compounds: A Comparative Study in a Series of Cu–Ln (Ln = Gd, Tb, Lu) Binuclear Complexes
journal, July 2017


Interpretation of europium(III) spectra
journal, July 2015


Efficacy of Density Functionals and Relativistic Effective Core Potentials for Lanthanide-Containing Species: The Ln54 Molecule Set
journal, May 2017

  • Aebersold, Lucas E.; Yuwono, Stephen H.; Schoendorff, George
  • Journal of Chemical Theory and Computation, Vol. 13, Issue 6
  • DOI: 10.1021/acs.jctc.6b01223

Assessment of Density Functionals for Computing Thermodynamic Properties of Lanthanide Complexes
journal, August 2017

  • Jaoul, Arnaud; Nocton, Grégory; Clavaguéra, Carine
  • ChemPhysChem, Vol. 18, Issue 19
  • DOI: 10.1002/cphc.201700629

Catalysis by Metal Organic Frameworks: Perspective and Suggestions for Future Research
journal, January 2019


A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
journal, April 2010

  • Grimme, Stefan; Antony, Jens; Ehrlich, Stephan
  • The Journal of Chemical Physics, Vol. 132, Issue 15
  • DOI: 10.1063/1.3382344

Physical Content of the Exact Kohn-Sham Orbital Energies: Band Gaps and Derivative Discontinuities
journal, November 1983


Effect of the damping function in dispersion corrected density functional theory
journal, March 2011

  • Grimme, Stefan; Ehrlich, Stephan; Goerigk, Lars
  • Journal of Computational Chemistry, Vol. 32, Issue 7
  • DOI: 10.1002/jcc.21759

Performance of DFT+ U method for prediction of structural and thermodynamic parameters of monazite-type ceramics
journal, April 2014

  • Blanca Romero, Ariadna; Kowalski, Piotr M.; Beridze, George
  • Journal of Computational Chemistry, Vol. 35, Issue 18
  • DOI: 10.1002/jcc.23618

Effect of Metal in M 3 (btc) 2 and M 2 (dobdc) MOFs for O 2 /N 2 Separations: A Combined Density Functional Theory and Experimental Study
journal, March 2015

  • Parkes, Marie V.; Sava Gallis, Dorina F.; Greathouse, Jeffery A.
  • The Journal of Physical Chemistry C, Vol. 119, Issue 12
  • DOI: 10.1021/jp511789g

Dispersion of linear and nonlinear optical susceptibilities and the hyperpolarizability of 3-methyl-4-phenyl-5-(2-pyridyl)-1,2,4-triazole
journal, January 2011

  • Reshak, Ali. H.; Stys, D.; Auluck, S.
  • Phys. Chem. Chem. Phys., Vol. 13, Issue 7
  • DOI: 10.1039/C0CP01601B

Computational Screening of Metal–Organic Frameworks for Membrane-Based CO 2 /N 2 /H 2 O Separations: Best Materials for Flue Gas Separation
journal, March 2018


Zr-based metal–organic frameworks: design, synthesis, structure, and applications
journal, January 2016

  • Bai, Yan; Dou, Yibo; Xie, Lin-Hua
  • Chemical Society Reviews, Vol. 45, Issue 8
  • DOI: 10.1039/C5CS00837A

First-principles Hubbard U approach for small molecule binding in metal-organic frameworks
journal, May 2016

  • Mann, Gregory W.; Lee, Kyuho; Cococcioni, Matteo
  • The Journal of Chemical Physics, Vol. 144, Issue 17
  • DOI: 10.1063/1.4947240

Multifunctional, Tunable Metal–Organic Framework Materials Platform for Bioimaging Applications
journal, June 2017

  • Sava Gallis, Dorina F.; Rohwer, Lauren E. S.; Rodriguez, Mark A.
  • ACS Applied Materials & Interfaces, Vol. 9, Issue 27
  • DOI: 10.1021/acsami.7b05859

Insights into the Stability of Zeolitic Imidazolate Frameworks in Humid Acidic Environments from First-Principles Calculations
journal, February 2018

  • Han, Chu; Zhang, Chenyang; Tymińska, Nina
  • The Journal of Physical Chemistry C, Vol. 122, Issue 8
  • DOI: 10.1021/acs.jpcc.7b12058

Electronic structure and magnetic properties of lanthanide 3+ cations
journal, June 2013


Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set
journal, July 1996


SO x /NO x Removal from Flue Gas Streams by Solid Adsorbents: A Review of Current Challenges and Future Directions
journal, August 2015


Stability of Zeolitic Imidazolate Frameworks in NO 2
journal, January 2019

  • Bhattacharyya, Souryadeep; Han, Rebecca; Joshi, Jayraj N.
  • The Journal of Physical Chemistry C, Vol. 123, Issue 4
  • DOI: 10.1021/acs.jpcc.8b11377

Revised Ionic Radii of Lanthanoid(III) Ions in Aqueous Solution
journal, May 2011

  • D’Angelo, Paola; Zitolo, Andrea; Migliorati, Valentina
  • Inorganic Chemistry, Vol. 50, Issue 10
  • DOI: 10.1021/ic200260r

Ionization Energies of Lanthanides
journal, August 2010

  • Lang, Peter F.; Smith, Barry C.
  • Journal of Chemical Education, Vol. 87, Issue 8
  • DOI: 10.1021/ed100215q

Ab initio study of TaON, an active photocatalyst under visible light irradiation
journal, January 2014

  • Reshak, A. H.
  • Physical Chemistry Chemical Physics, Vol. 16, Issue 22
  • DOI: 10.1039/c4cp00285g

Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set
journal, October 1996


Towards metal–organic framework based field effect chemical sensors: UiO-66-NH 2 for nerve agent detection
journal, January 2016

  • Stassen, I.; Bueken, B.; Reinsch, H.
  • Chemical Science, Vol. 7, Issue 9
  • DOI: 10.1039/C6SC00987E

Ab initio molecular-dynamics simulation of the liquid-metal–amorphous-semiconductor transition in germanium
journal, May 1994


Restoring the Density-Gradient Expansion for Exchange in Solids and Surfaces
journal, April 2008


Metal–Organic Frameworks for Separations
journal, September 2011

  • Li, Jian-Rong; Sculley, Julian; Zhou, Hong-Cai
  • Chemical Reviews, Vol. 112, Issue 2, p. 869-932
  • DOI: 10.1021/cr200190s

Two Lanthanide Metal–Organic Frameworks as Remarkably Selective and Sensitive Bifunctional Luminescence Sensor for Metal Ions and Small Organic Molecules
journal, January 2017

  • Yan, Wei; Zhang, Chuanlei; Chen, Shuguang
  • ACS Applied Materials & Interfaces, Vol. 9, Issue 2
  • DOI: 10.1021/acsami.6b14563

In Situ Probes of Capture and Decomposition of Chemical Warfare Agent Simulants by Zr-Based Metal Organic Frameworks
journal, January 2017

  • Plonka, Anna M.; Wang, Qi; Gordon, Wesley O.
  • Journal of the American Chemical Society, Vol. 139, Issue 2
  • DOI: 10.1021/jacs.6b11373

Ab initio calculation of energy levels of trivalent lanthanide ions
journal, January 2018

  • Freidzon, Alexandra Ya.; Kurbatov, Ilia A.; Vovna, Vitaliy I.
  • Physical Chemistry Chemical Physics, Vol. 20, Issue 21
  • DOI: 10.1039/C7CP08366A

Theoretical design of highly luminescent europium (III) complexes: A factorial study
journal, January 2011

  • Dutra, José Diogo L.; Gimenez, Iara F.; Junior, Nivan B. da Costa
  • Journal of Photochemistry and Photobiology A: Chemistry, Vol. 217, Issue 2-3
  • DOI: 10.1016/j.jphotochem.2010.11.011

Density functional calculations of lanthanide oxides
journal, June 1995

  • Wang, S. G.; Pan, D. K.; Schwarz, W. H. E.
  • The Journal of Chemical Physics, Vol. 102, Issue 23
  • DOI: 10.1063/1.468796

The Chemistry and Applications of Metal-Organic Frameworks
journal, August 2013

  • Furukawa, H.; Cordova, K. E.; O'Keeffe, M.
  • Science, Vol. 341, Issue 6149, p. 1230444-1230444
  • DOI: 10.1126/science.1230444

Flue gas treatment via CO2 adsorption
journal, July 2011

  • Sayari, Abdelhamid; Belmabkhout, Youssef; Serna-Guerrero, Rodrigo
  • Chemical Engineering Journal, Vol. 171, Issue 3
  • DOI: 10.1016/j.cej.2011.02.007

Mechanical properties of metal dihydrides
journal, February 2016

  • Schultz, Peter A.; Snow, Clark S.
  • Modelling and Simulation in Materials Science and Engineering, Vol. 24, Issue 3
  • DOI: 10.1088/0965-0393/24/3/035005

Defect and Linker Effects on the Binding of Organophosphorous Compounds in UiO-66 and Rare-Earth MOFs
journal, November 2018

  • Harvey, Jacob A.; Greathouse, Jeffery A.; Sava Gallis, Dorina F.
  • The Journal of Physical Chemistry C, Vol. 122, Issue 47
  • DOI: 10.1021/acs.jpcc.8b06198

Ab initio molecular dynamics determination of competitive O 2 vs. N 2 adsorption at open metal sites of M 2 (dobdc)
journal, January 2016

  • Parkes, Marie V.; Greathouse, Jeffery A.; Hart, David B.
  • Physical Chemistry Chemical Physics, Vol. 18, Issue 16
  • DOI: 10.1039/C6CP00768F

Luminescence properties and DFT calculations of lanthanide(III) complexes (Ln = La, Nd, Sm, Eu, Gd, Tb, Dy) with 2,6-bis(5-methyl-benzimidazol-2-yl)pyridine
journal, July 2018

  • Cruz-Navarro, Antonio; Rivera, José María; Durán-Hernández, Jesús
  • Journal of Molecular Structure, Vol. 1164
  • DOI: 10.1016/j.molstruc.2018.03.065

Zeolitic Imidazolate Frameworks: Next-Generation Materials for Energy-Efficient Gas Separations
journal, October 2014

  • Pimentel, Brian R.; Parulkar, Aamena; Zhou, Er-kang
  • ChemSusChem, Vol. 7, Issue 12
  • DOI: 10.1002/cssc.201402647

Direct solid-phase synthesis of molecular heterooligonuclear lanthanoid-complexes
journal, March 2020


Voltage- and time-dependent valence state transition in cobalt oxide catalysts during the oxygen evolution reaction
journal, April 2020


Reducing Dzyaloshinskii-Moriya interaction and field-free spin-orbit torque switching in synthetic antiferromagnets
journal, May 2021


High-resolution X-ray luminescence extension imaging
journal, February 2021


Electronic structure of AlFeN films exhibiting crystallographic orientation change from c- to a-axis with Fe concentrations and annealing effect
journal, February 2020