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Title: Metagenome-Assembled Genome of USCα AHI, a Potential High-Affinity Methanotroph from Axel Heiberg Island, Canadian High Arctic

Journal Article · · Microbiology Resource Announcements

Metagenomic sequencing of active-layer cryosols from the Canadian High Arctic has yielded a nearly complete genome for an atmospheric CH 4 -oxidizing bacterium belonging to upland soil cluster α (USCα). This genome contains genes involved in CH 4 metabolism, H 2 metabolism, and multiple carbon assimilation pathways.

Sponsoring Organization:
USDOE
Grant/Contract Number:
SC0004902
OSTI ID:
1574060
Journal Information:
Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 46 Vol. 8; ISSN 2576-098X
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (16)

Effects of simulated spring thaw of permafrost from mineral cryosol on CO 2 emissions and atmospheric CH 4 uptake journal September 2015
An active atmospheric methane sink in high Arctic mineral cryosols journal April 2015
Insights into the phylogeny and coding potential of microbial dark matter journal July 2013
Fast gapped-read alignment with Bowtie 2 journal March 2012
Widespread soil bacterium that oxidizes atmospheric methane journal April 2019
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing journal May 2012
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth journal April 2012
Prokka: rapid prokaryotic genome annotation journal March 2014
KAAS: an automatic genome annotation and pathway reconstruction server journal May 2007
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
Unravelling the Identity, Metabolic Potential and Global Biogeography of the Atmospheric Methane-Oxidizing Upland Soil Cluster α: Illuminating the USCα methanotrophs from soil journal January 2018
Atmospheric CH 4 oxidation by Arctic permafrost and mineral cryosols as a function of water saturation and temperature journal July 2016
Metagenomes from Thawing Low-Soil-Organic-Carbon Mineral Cryosols and Permafrost of the Canadian High Arctic journal November 2014
BLAST+: architecture and applications journal January 2009
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities journal January 2015
Anvi’o: an advanced analysis and visualization platform for ‘omics data journal January 2015