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Title: Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis

Authors:
; ; ; ; ; ; ; ; ;
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1573411
Resource Type:
Published Article
Journal Name:
Frontiers in Microbiology
Additional Journal Information:
Journal Name: Frontiers in Microbiology Journal Volume: 10; Journal ID: ISSN 1664-302X
Publisher:
Frontiers Media SA
Country of Publication:
Switzerland
Language:
English

Citation Formats

Zhang, Yaoping, Vera, Jessica M., Xie, Dan, Serate, Jose, Pohlmann, Edward, Russell, Jason D., Hebert, Alexander S., Coon, Joshua J., Sato, Trey K., and Landick, Robert. Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis. Switzerland: N. p., 2019. Web. doi:10.3389/fmicb.2019.02596.
Zhang, Yaoping, Vera, Jessica M., Xie, Dan, Serate, Jose, Pohlmann, Edward, Russell, Jason D., Hebert, Alexander S., Coon, Joshua J., Sato, Trey K., & Landick, Robert. Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis. Switzerland. doi:10.3389/fmicb.2019.02596.
Zhang, Yaoping, Vera, Jessica M., Xie, Dan, Serate, Jose, Pohlmann, Edward, Russell, Jason D., Hebert, Alexander S., Coon, Joshua J., Sato, Trey K., and Landick, Robert. Thu . "Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis". Switzerland. doi:10.3389/fmicb.2019.02596.
@article{osti_1573411,
title = {Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis},
author = {Zhang, Yaoping and Vera, Jessica M. and Xie, Dan and Serate, Jose and Pohlmann, Edward and Russell, Jason D. and Hebert, Alexander S. and Coon, Joshua J. and Sato, Trey K. and Landick, Robert},
abstractNote = {},
doi = {10.3389/fmicb.2019.02596},
journal = {Frontiers in Microbiology},
number = ,
volume = 10,
place = {Switzerland},
year = {2019},
month = {11}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.3389/fmicb.2019.02596

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Works referenced in this record:

Sulfonate-sulfur metabolism and its regulation in Escherichia coli
journal, July 2001

  • van der Ploeg, Jan; Eichhorn, Eric; Leisinger, Thomas
  • Archives of Microbiology, Vol. 176, Issue 1-2
  • DOI: 10.1007/s002030100298

Metabolic engineering of Zymomonas mobilis for 2,3-butanediol production from lignocellulosic biomass sugars
journal, September 2016

  • Yang, Shihui; Mohagheghi, Ali; Franden, Mary Ann
  • Biotechnology for Biofuels, Vol. 9, Issue 1
  • DOI: 10.1186/s13068-016-0606-y

Mechanisms of RND multidrug efflux pumps
journal, May 2009

  • Nikaido, Hiroshi; Takatsuka, Yumiko
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1794, Issue 5, p. 769-781
  • DOI: 10.1016/j.bbapap.2008.10.004

The AcrB Efflux Pump: Conformational Cycling and Peristalsis Lead to Multidrug Resistance
journal, September 2008


The carbon source influences the efflux pump-mediated antimicrobial resistance in clinically important Gram-negative bacteria
journal, January 2012

  • Villagra, N. A.; Fuentes, J. A.; Jofre, M. R.
  • Journal of Antimicrobial Chemotherapy, Vol. 67, Issue 4
  • DOI: 10.1093/jac/dkr573

CysB-dependent upregulation of the Salmonella Typhimurium cysJIH operon in response to antimicrobial compounds that induce oxidative stress
journal, February 2015

  • Álvarez, Ricardo; Neumann, German; Frávega, Jorge
  • Biochemical and Biophysical Research Communications, Vol. 458, Issue 1
  • DOI: 10.1016/j.bbrc.2015.01.058

Metabolic Engineering of a Pentose Metabolism Pathway in Ethanologenic Zymomonas mobilis
journal, January 1995


Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
journal, February 2015


Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli
journal, October 1992


The PRIDE database and related tools and resources in 2019: improving support for quantification data
journal, November 2018

  • Perez-Riverol, Yasset; Csordas, Attila; Bai, Jingwen
  • Nucleic Acids Research, Vol. 47, Issue D1
  • DOI: 10.1093/nar/gky1106

The AcrAB-TolC Efflux Pump Contributes to Multidrug Resistance in the Nosocomial Pathogen Enterobacter aerogenes
journal, August 2002


Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
journal, January 2009


Reduction of xylose to xylitol catalyzed by glucose–fructose oxidoreductase from Zymomonas mobilis
journal, April 2009


Zymomonas mobilis: a novel platform for future biorefineries
journal, January 2014


Inhibition of growth of Zymomonas mobilis by model compounds found in lignocellulosic hydrolysates
journal, January 2013

  • Franden, Mary Ann; Pilath, Heidi M.; Mohagheghi, Ali
  • Biotechnology for Biofuels, Vol. 6, Issue 1
  • DOI: 10.1186/1754-6834-6-99

Trimmomatic: a flexible trimmer for Illumina sequence data
journal, April 2014


Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates
journal, January 2013

  • Skerker, Jeffrey M.; Leon, Dacia; Price, Morgan N.
  • Molecular Systems Biology, Vol. 9, Issue 1
  • DOI: 10.1038/msb.2013.30

Comparing the fermentation performance of Escherichia coli KO11, Saccharomyces cerevisiae 424A(LNH-ST) and Zymomonas mobilis AX101 for cellulosic ethanol production
journal, January 2010

  • Lau, Ming W.; Gunawan, Christa; Balan, Venkatesh
  • Biotechnology for Biofuels, Vol. 3, Issue 1
  • DOI: 10.1186/1754-6834-3-11

Glutathione: Overview of its protective roles, measurement, and biosynthesis
journal, February 2009

  • Forman, Henry Jay; Zhang, Hongqiao; Rinna, Alessandra
  • Molecular Aspects of Medicine, Vol. 30, Issue 1-2
  • DOI: 10.1016/j.mam.2008.08.006

Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate
journal, November 2013


Cellulosic ethanol production from AFEX-treated corn stover using Saccharomyces cerevisiae 424A(LNH-ST)
journal, January 2009

  • Lau, M. W.; Dale, B. E.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 5, p. 1368-1373
  • DOI: 10.1073/pnas.0812364106

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
journal, August 2011


Xylose Improves Antibiotic Activity of Chloramphenicol and Tetracycline against K. pneumoniae and A. baumannii in a Murine Model of Skin Infection
journal, July 2018

  • Hidalgo, Alejandro A.; Arias, Ángel J.; Fuentes, Juan A.
  • Canadian Journal of Infectious Diseases and Medical Microbiology, Vol. 2018
  • DOI: 10.1155/2018/3467219

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics
journal, May 2014


Transcriptome profiling of Zymomonas mobilis under ethanol stress
journal, January 2012

  • He, Ming-xiong; Wu, Bo; Shui, Zong-xia
  • Biotechnology for Biofuels, Vol. 5, Issue 1
  • DOI: 10.1186/1754-6834-5-75

A review on sustainable yeast biotechnological processes and applications
journal, March 2018


Efflux-Mediated Drug Resistance in Bacteria: An Update
journal, January 2009


A comparative study of ethanol production using dilute acid, ionic liquid and AFEX™ pretreated corn stover
journal, January 2014

  • Uppugundla, Nirmal; da Costa Sousa, Leonardo; Chundawat, Shishir PS
  • Biotechnology for Biofuels, Vol. 7, Issue 1
  • DOI: 10.1186/1754-6834-7-72