Micronutrient deficiencies in inflammatory bowel disease
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journal
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January 2015 |
Niacin ameliorates ulcerative colitis via prostaglandin D 2 ‐mediated D prostanoid receptor 1 activation
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journal
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March 2017 |
Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
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journal
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January 2018 |
Antimicrobial Chemokines
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journal
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January 2012 |
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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journal
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September 2007 |
Succession of endophytic fungi and arbuscular mycorrhizal fungi associated with the growth of plant and their correlation with secondary metabolites in the roots of plants
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journal
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April 2021 |
Selected loss of tolerance evidenced by Crohn's disease–associated immune responses to auto- and microbial antigens
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journal
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September 2002 |
ggplot2
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book
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January 2016 |
DUOX2-derived reactive oxygen species are effectors of NOD2-mediated antibacterial responses
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journal
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September 2009 |
Antibodies to CBir1 Flagellin Define a Unique Response That Is Associated Independently With Complicated Crohn’s Disease
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journal
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June 2005 |
Mucosal Lipocalin 2 Has Pro-Inflammatory and Iron-Sequestering Effects in Response to Bacterial Enterobactin
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journal
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October 2009 |
Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study
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text
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January 2017 |
The Human CXC Chemokine Granulocyte Chemotactic Protein 2 (GCP-2)/CXCL6 Possesses Membrane-Disrupting Properties and Is Antibacterial
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journal
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April 2008 |
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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journal
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November 2003 |
bioBakery: a meta’omic analysis environment
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journal
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November 2017 |
The IBD genome—new study findings contribute to an ever-growing gene catalogue
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November 2012 |
Fine-mapping inflammatory bowel disease loci to single-variant resolution
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June 2017 |
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
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journal
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January 2002 |
The human microbiome: there is much left to do
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June 2022 |
Environmental Risk Factors for Inflammatory Bowel Diseases: A Review
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journal
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September 2014 |
Fast and sensitive protein alignment using DIAMOND
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journal
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November 2014 |
Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies
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August 2016 |
Human genetic variation and the gut microbiome in disease
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journal
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August 2017 |
Microbial strain-level population structure and genetic diversity from metagenomes
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February 2017 |
RISK stratification in paediatric Crohn's disease
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April 2017 |
Comparison of Excretion of Nicotinuric Acid After Ingestion of Two Controlled Release Nicotinic Acid Preparations in Man
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December 1988 |
Comparison of Collection Methods for Fecal Samples in Microbiome Studies
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journal
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December 2016 |
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
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journal
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November 2007 |
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
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journal
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July 2014 |
Simultaneous generation of many RNA-seq libraries in a single reaction
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journal
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March 2015 |
Maximal viral information recovery from sequence data using VirMAP
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journal
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August 2018 |
Development and validation of a new, simplified endoscopic activity score for Crohn's disease: the SES-CD
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journal
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October 2004 |
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
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journal
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January 2012 |
Density Estimation for Statistics and Data Analysis
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book
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January 1998 |
A communal catalogue reveals Earths multiscale microbial diversity
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text
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January 2017 |
2016 update of the PRIDE database and its related tools
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journal
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September 2016 |
Relating the metatranscriptome and metagenome of the human gut
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journal
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May 2014 |
Antibodies to CBir1 Flagellin Define a Unique Response That Is Associated Independently With Complicated Crohn’s Disease
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journal
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June 2005 |
The Long-Term Stability of the Human Gut Microbiota
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journal
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July 2013 |
Dynamics of the human gut microbiome in inflammatory bowel disease
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journal
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February 2017 |
A communal catalogue reveals Earth’s multiscale microbial diversity
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journal
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November 2017 |
Novel mechanisms and functions of complement
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journal
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November 2017 |
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
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journal
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January 2012 |
KEGG: new perspectives on genomes, pathways, diseases and drugs
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journal
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November 2016 |
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
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journal
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November 2014 |
Bile Acid Malabsorption in Inflammatory Bowel Disease
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January 2015 |
Dual oxidase2 is expressed all along the digestive tract
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May 2005 |
A global reference for human genetic variation
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January 2015 |
Carnitine in bacterial physiology and metabolism
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journal
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June 2015 |
Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study
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journal
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April 2017 |
Microbial strain-level population structure and genetic diversity from metagenomes
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journal
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February 2017 |
The Complement System in Inflammatory Bowel Disease
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journal
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January 2014 |
The short inflammatory bowel disease questionnaire is reliable and responsive to clinically important change in ulcerative colitis
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journal
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October 2001 |
Mucosal Lipocalin 2 Has Pro-Inflammatory and Iron-Sequestering Effects in Response to Bacterial Enterobactin
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text
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January 2009 |
DUOX2-derived reactive oxygen species are effectors of NOD2-mediated antibacterial responses
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journal
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September 2009 |
Strains, functions and dynamics in the expanded Human Microbiome Project
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journal
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September 2017 |
A global reference for human genetic variation
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text
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January 2015 |
Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations
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journal
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July 2015 |
Complex host genetics influence the microbiome in inflammatory bowel disease
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journal
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December 2014 |
The human gut virome: Inter-individual variation and dynamic response to diet
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journal
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August 2011 |
Reverse Transcriptase Template Switching: A SMART™ Approach for Full-Length cDNA Library Construction
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journal
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April 2001 |
UPARSE: highly accurate OTU sequences from microbial amplicon reads
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journal
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August 2013 |
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
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journal
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October 2008 |
Density Estimation for Statistics and Data Analysis
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journal
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November 1987 |
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
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journal
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March 2015 |
Complement in disease: a defence system turning offensive
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journal
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May 2016 |
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
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journal
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April 2015 |
Functional predictions from inference and observation in sequence-based inflammatory bowel disease research
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journal
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January 2012 |
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
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journal
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November 2009 |
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
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journal
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January 2019 |
2016 update of the PRIDE database and its related tools
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journal
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November 2015 |
Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases
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journal
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September 2012 |
limma powers differential expression analyses for RNA-sequencing and microarray studies
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journal
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January 2015 |
Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
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journal
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June 2015 |
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
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journal
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November 2007 |
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
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journal
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January 2011 |
Dynamics of the human gut microbiome in inflammatory bowel disease
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journal
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February 2017 |
Mucosal Lipocalin 2 Has Pro-Inflammatory and Iron-Sequestering Effects in Response to Bacterial Enterobactin
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journal
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October 2009 |
The global burden of IBD: from 2015 to 2025
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journal
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September 2015 |
A simple clinical colitis activity index
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journal
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July 1998 |
Search and clustering orders of magnitude faster than BLAST
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journal
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August 2010 |
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
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journal
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January 2012 |
Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease
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journal
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October 2012 |
The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead
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journal
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May 2014 |
The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes
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February 2015 |
Significance of serum complement levels in patients with gastrointestinal disease.
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August 1979 |
Growth rate-dependent regulation of RNA polymerase synthesis in Escherichia coli
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January 1985 |
KEGG: new perspectives on genomes, pathways, diseases and drugs
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journal
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November 2016 |
The human gut virome: Inter-individual variation and dynamic response to diet
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journal
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August 2011 |
A global reference for human genetic variation
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text
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January 2015 |
MetaRef: a pan-genomic database for comparative and community microbial genomics
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journal
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November 2013 |
Strains, functions and dynamics in the expanded Human Microbiome Project
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journal
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September 2017 |
Data, information, knowledge and principle: back to metabolism in KEGG
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journal
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November 2013 |
UPARSE: highly accurate OTU sequences from microbial amplicon reads
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journal
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August 2013 |
Variation Between Observers in Describing Mucosal Appearances in Proctocolitis
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journal
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January 1964 |
Novel mechanisms and functions of complement
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journal
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November 2017 |
Reverse Transcriptase Template Switching: A SMART™ Approach for Full-Length cDNA Library Construction
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journal
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April 2001 |
An improved approximation to the precision of fixed effects from restricted maximum likelihood
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journal
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May 2009 |
limma powers differential expression analyses for RNA-sequencing and microarray studies
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text
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January 2015 |
Species-level functional profiling of metagenomes and metatranscriptomes
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journal
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October 2018 |
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
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journal
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August 2007 |
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
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journal
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November 2014 |
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
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journal
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March 2011 |
A communal catalogue reveals Earth’s multiscale microbial diversity
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journal
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November 2017 |
Carnitine in bacterial physiology and metabolism
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journal
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June 2015 |
Advances in Analysis of Longitudinal Data
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journal
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March 2010 |
Fecal calprotectin in inflammatory bowel disease
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journal
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January 2016 |
Virus detection and identification using random multiplex (RT)-PCR with 3'-locked random primers
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journal
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January 2007 |
Multiple vitamin status in Crohn's disease: Correlation with disease activity
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September 1993 |
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
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journal
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September 2015 |
Identification of a variant associated with adult-type hypolactasia
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journal
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January 2002 |
Altered Fecal Bile Acid Pattern in Patients with Inflammatory Bowel Disease
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journal
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January 1986 |
Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases
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journal
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September 2012 |
Specific genetic and microbial signature associated with paediatric ileal Crohn's disease
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journal
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July 2014 |
Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease
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journal
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May 2001 |
The global burden of IBD: from 2015 to 2025
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journal
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September 2015 |
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients
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collection
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January 2017 |
Variation Between Observers in Describing Mucosal Appearances in Proctocolitis
|
journal
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January 1964 |
Complex host genetics influence the microbiome in inflammatory bowel disease
|
journal
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December 2014 |
Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
|
journal
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June 2015 |
Metatranscriptome of human faecal microbial communities in a cohort of adult men
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journal
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January 2018 |
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
|
journal
|
November 2009 |
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients
|
journal
|
November 2017 |
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
|
journal
|
January 2011 |
Selected loss of tolerance evidenced by Crohn's disease–associated immune responses to auto- and microbial antigens
|
journal
|
September 2002 |
Temporal and technical variability of human gut metagenomes
|
journal
|
April 2015 |
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
|
journal
|
September 2007 |
Polinton-like viruses are abundant in aquatic ecosystems
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journal
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January 2021 |
The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes
|
journal
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July 2016 |
Niacin ameliorates ulcerative colitis via prostaglandin D 2 ‐mediated D prostanoid receptor 1 activation
|
journal
|
December 2020 |
Fine-mapping inflammatory bowel disease loci to single-variant resolution.
|
text
|
January 2017 |
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
|
journal
|
August 2007 |
Environmental Risk Factors for Inflammatory Bowel Diseases: A Review
|
journal
|
September 2014 |
Species-level functional profiling of metagenomes and metatranscriptomes
|
journal
|
October 2018 |
UniRef: comprehensive and non-redundant UniProt reference clusters
|
journal
|
March 2007 |
A simple clinical colitis activity index
|
journal
|
July 1998 |
Fast and sensitive protein alignment using DIAMOND
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journal
|
November 2014 |
The Treatment-Naive Microbiome in New-Onset Crohn’s Disease
|
journal
|
March 2014 |
limma powers differential expression analyses for RNA-sequencing and microarray studies
|
journal
|
January 2015 |
Search and clustering orders of magnitude faster than BLAST
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journal
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August 2010 |
Mitochondrial function and toxicity: Role of the B vitamin family on mitochondrial energy metabolism
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journal
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October 2006 |
Intestinal Epithelial Serum Amyloid A Modulates Bacterial Growth In Vitro and Pro-Inflammatory Responses in Mouse Experimental Colitis
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journal
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November 2010 |
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
|
journal
|
October 2008 |
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
|
journal
|
January 2019 |
Comparison of Collection Methods for Fecal Samples in Microbiome Studies
|
journal
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December 2016 |
2016 update of the PRIDE database and its related tools
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journal
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November 2015 |
Fast optimal leaf ordering for hierarchical clustering
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journal
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June 2001 |
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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journal
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November 2003 |
Intestinal transport and metabolism of bile acids
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journal
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September 2014 |
Advances in Analysis of Longitudinal Data
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journal
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March 2010 |
bioBakery: a meta’omic analysis environment
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journal
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November 2017 |
Simultaneous generation of many RNA-seq libraries in a single reaction
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journal
|
March 2015 |
Maximal viral information recovery from sequence data using VirMAP
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journal
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August 2018 |
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
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journal
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March 2012 |
A Reliable Data-Based Bandwidth Selection Method for Kernel Density Estimation
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journal
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July 1991 |
Identification of a variant associated with adult-type hypolactasia
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journal
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January 2002 |
Qiita: rapid, web-enabled microbiome meta-analysis
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journal
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October 2018 |
A Reliable Data-Based Bandwidth Selection Method for Kernel Density Estimation
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journal
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July 1991 |