Laser ablation tomography for visualization of root colonization by edaphic organisms
Abstract
Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for high-throughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root–organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms.
- Authors:
-
[1];
[1];
[1]
- Pennsylvania State Univ., University Park, PA (United States)
- Lasers for Innovative Solutions, LLC, State College, PA (United States)
- The Univ. of Adelaide, Glen Osmond (Australia)
- Michigan State Univ., East Lansing, MI (United States)
- Publication Date:
- Research Org.:
- Pennsylvania State Univ., University Park, PA (United States)
- Sponsoring Org.:
- USDOE Advanced Research Projects Agency - Energy (ARPA-E)
- Contributing Org.:
- Department of Plant Science, Pennsylvania State University, University Park, PA 16802 USA 2 Lasers for Innovative Solutions, LLC, 200 Innovation Blvd. (Suite 214), State College, PA 16803 USA 3 School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia 4 Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA
- OSTI Identifier:
- 1572933
- Grant/Contract Number:
- AR0000821
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Experimental Botany
- Additional Journal Information:
- Journal Volume: 70; Journal Issue: 19; Journal ID: ISSN 0022-0957
- Publisher:
- Oxford University Press
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES; cereal cyst nematode; Fusarium; mycorrhizae; root anatomy; root phenotyping; western corn rootworm
Citation Formats
Strock, Christopher F., Schneider, Hannah M., Galindo-Castañeda, Tania, Hall, Benjamin T., Van Gansbeke, Bart, Mather, Diane E., Roth, Mitchell G., Chilvers, Martin I., Guo, Xiangrong, Brown, Kathleen, and Lynch, Jonathan P. Laser ablation tomography for visualization of root colonization by edaphic organisms. United States: N. p., 2019.
Web. doi:10.1093/jxb/erz271.
Strock, Christopher F., Schneider, Hannah M., Galindo-Castañeda, Tania, Hall, Benjamin T., Van Gansbeke, Bart, Mather, Diane E., Roth, Mitchell G., Chilvers, Martin I., Guo, Xiangrong, Brown, Kathleen, & Lynch, Jonathan P. Laser ablation tomography for visualization of root colonization by edaphic organisms. United States. doi:10.1093/jxb/erz271.
Strock, Christopher F., Schneider, Hannah M., Galindo-Castañeda, Tania, Hall, Benjamin T., Van Gansbeke, Bart, Mather, Diane E., Roth, Mitchell G., Chilvers, Martin I., Guo, Xiangrong, Brown, Kathleen, and Lynch, Jonathan P. Thu .
"Laser ablation tomography for visualization of root colonization by edaphic organisms". United States. doi:10.1093/jxb/erz271. https://www.osti.gov/servlets/purl/1572933.
@article{osti_1572933,
title = {Laser ablation tomography for visualization of root colonization by edaphic organisms},
author = {Strock, Christopher F. and Schneider, Hannah M. and Galindo-Castañeda, Tania and Hall, Benjamin T. and Van Gansbeke, Bart and Mather, Diane E. and Roth, Mitchell G. and Chilvers, Martin I. and Guo, Xiangrong and Brown, Kathleen and Lynch, Jonathan P.},
abstractNote = {Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for high-throughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root–organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms.},
doi = {10.1093/jxb/erz271},
journal = {Journal of Experimental Botany},
number = 19,
volume = 70,
place = {United States},
year = {2019},
month = {6}
}
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Works referencing / citing this record:
Identification of ergosterol in vesicular-arbuscular mycorrhizae
journal, August 1992
- Frey, B.; Buser, H. R.; Sch�epp, H.
- Biology and Fertility of Soils, Vol. 13, Issue 4
Biochemical approaches to the study of plant-fungal interactions in arbuscular mycorrhiza
journal, October 1994
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Scanning electron microscopy of microorganisms on the roots of wheat
journal, December 1974
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Mapping of QTLs for lateral root branching and length in maize (Zea mays L.) under differential phosphorus supply
journal, July 2005
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Characterizing variation in mycorrhiza effect among diverse plant varieties
journal, December 2009
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- Theoretical and Applied Genetics, Vol. 120, Issue 5
Precise mapping Fhb5, a major QTL conditioning resistance to Fusarium infection in bread wheat (Triticum aestivum L.)
journal, July 2011
- Xue, Shulin; Xu, Feng; Tang, Mingzhi
- Theoretical and Applied Genetics, Vol. 123, Issue 6
FvSTR1, a striatin orthologue in Fusarium virguliforme, is required for asexual development and virulence
journal, June 2017
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Imaging mycorrhizal fungal transformants that express EGFP during ericoid endosymbiosis
journal, June 2007
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- Current Genetics, Vol. 52, Issue 2
FvSNF1, the sucrose non-fermenting protein kinase gene of Fusarium virguliforme, is required for cell-wall-degrading enzymes expression and sudden death syndrome development in soybean
journal, January 2017
- Islam, Kazi T.; Bond, Jason P.; Fakhoury, Ahmad M.
- Current Genetics, Vol. 63, Issue 4
Nematode feeding sites: unique organs in plant roots
journal, July 2013
- Kyndt, Tina; Vieira, Paulo; Gheysen, Godelieve
- Planta, Vol. 238, Issue 5
Mycorrhizal responsiveness of maize (Zea mays L.) genotypes as related to releasing date and available P content in soil
journal, March 2013
- Chu, Qun; Wang, Xinxin; Yang, Yang
- Mycorrhiza, Vol. 23, Issue 6
Distinguishable staining with neutral red for GFP-marked and GFP-nonmarked Fusarium oxysporum strains simultaneously colonizing root surfaces
journal, February 2003
- Nonomura, Teruo; Tajima, Hiromi; Kitagawa, Yuko
- Journal of General Plant Pathology, Vol. 69, Issue 1
Colonization history of the western corn rootworm (Diabrotica virgifera virgifera) in North America: insights from random forest ABC using microsatellite data
journal, September 2017
- Lombaert, Eric; Ciosi, Marc; Miller, Nicholas J.
- Biological Invasions, Vol. 20, Issue 3
Cereal cyst nematodes: importance, distribution, identification, quantification, and control
journal, June 2017
- Toumi, Fateh; Waeyenberge, Lieven; Viaene, Nicole
- European Journal of Plant Pathology, Vol. 150, Issue 1
A Maize Inbred Exhibits Resistance Against Western Corn Rootwoorm, Diabrotica virgifera virgifera
journal, November 2017
- Castano-Duque, Lina; Loades, Kenneth W.; Tooker, John F.
- Journal of Chemical Ecology, Vol. 43, Issue 11-12
Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis
journal, February 2009
- Brundrett, Mark C.
- Plant and Soil, Vol. 320, Issue 1-2
Temperate forest understorey species performance is altered by local arbuscular mycorrhizal fungal communities from stands of different successional stages
journal, January 2012
- Uibopuu, Annika; Moora, Mari; Öpik, Maarja
- Plant and Soil, Vol. 356, Issue 1-2
Chitin and ergosterol content of extraradical and intraradical mycelium of the vesicular-arbuscular mycorrhizal fungus Glomus intraradices
journal, June 1994
- Frey, B.; Vilariño, A.; SchÜepp, H.
- Soil Biology and Biochemistry, Vol. 26, Issue 6
Detection of external insect infestations in jujube fruit using hyperspectral reflectance imaging
journal, April 2011
- Wang, J.; Nakano, K.; Ohashi, S.
- Biosystems Engineering, Vol. 108, Issue 4
Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize
journal, September 2005
- Humphris, Sonia N.; Bengough, A. Glyn; Griffiths, Bryan S.
- FEMS Microbiology Ecology, Vol. 54, Issue 1
In vivo time-lapse documentation using confocal and multi-photon microscopy reveals the mechanisms of invasion into the Arabidopsis root vascular system by Fusarium oxysporum
journal, October 2007
- Czymmek, Kirk J.; Fogg, Melissa; Powell, Deborah H.
- Fungal Genetics and Biology, Vol. 44, Issue 10
Mid-infrared diffuse reflectance spectroscopy for the rapid analysis of plant root composition
journal, November 2011
- White, Kathryn E.; Reeves, James B.; Coale, Frank J.
- Geoderma, Vol. 167-168
Early detection of toxigenic fungi on maize by hyperspectral imaging analysis
journal, November 2010
- Del Fiore, A.; Reverberi, M.; Ricelli, A.
- International Journal of Food Microbiology, Vol. 144, Issue 1
Detection and quantification of root-knot nematode (Meloidogyne javanica), lesion nematode (Pratylenchus zeae) and dagger nematode (Xiphinema elongatum) parasites of sugarcane using real-time PCR
journal, June 2008
- Berry, Shaun D.; Fargette, Mireille; Spaull, Vaughan W.
- Molecular and Cellular Probes, Vol. 22, Issue 3
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