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Title: Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost

Abstract

ABSTRACT Permafrost contains one of the least known soil microbiomes, where microbial populations reside in an ice-locked environment. Here, 56 prokaryotic metagenome-assembled genome (MAG) sequences from 13 phyla are reported. These MAGs will provide information on metabolic pathways that could mediate biogeochemical cycles in Svalbard permafrost.

Authors:
 [1];  [1];  [2];  [3]
+ Show Author Affiliations
  1. Bergen Univ. (Norway)
  2. Bergen Univ. (Norway); University Centre in Svalbard (UNIS) (Norway)
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); Norwegian Research Council
OSTI Identifier:
1572795
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Microbiology Resource Announcements
Additional Journal Information:
Journal Volume: 8; Journal Issue: 27; Journal ID: ISSN 2576-098X
Publisher:
SSPA - American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, and Taş, Neslihan. Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost. United States: N. p., 2019. Web. doi:10.1128/mra.00516-19.
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Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, & Taş, Neslihan. Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost. United States. doi:https://doi.org/10.1128/mra.00516-19
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Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, and Taş, Neslihan. Wed . "Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost". United States. doi:https://doi.org/10.1128/mra.00516-19. https://www.osti.gov/servlets/purl/1572795.
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@article{osti_1572795,
title = {Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost},
author = {Xue, Yaxin and Jonassen, Inge and Øvreås, Lise and Taş, Neslihan},
abstractNote = {ABSTRACT Permafrost contains one of the least known soil microbiomes, where microbial populations reside in an ice-locked environment. Here, 56 prokaryotic metagenome-assembled genome (MAG) sequences from 13 phyla are reported. These MAGs will provide information on metabolic pathways that could mediate biogeochemical cycles in Svalbard permafrost.},
doi = {10.1128/mra.00516-19},
journal = {Microbiology Resource Announcements},
number = 27,
volume = 8,
place = {United States},
year = {2019},
month = {7}
}
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Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI:  https://doi.org/10.1128/mra.00516-19
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Works referenced in this record:

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
journal, January 2015

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
journal, May 2018

  • Sieber, Christian M. K.; Probst, Alexander J.; Sharrar, Allison
  • Nature Microbiology, Vol. 3, Issue 7
  • DOI: 10.1038/s41564-018-0171-1

Permafrost Meta-Omics and Climate Change
journal, June 2016

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
journal, January 2015

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
journal, August 2017

  • Bowers, Robert M.; Kyrpides, Nikos C.; Stepanauskas, Ramunas
  • Nature Biotechnology, Vol. 35, Issue 8
  • DOI: 10.1038/nbt.3893

The microbial ecology of permafrost
journal, May 2014

  • Jansson, Janet K.; Taş, Neslihan
  • Nature Reviews Microbiology, Vol. 12, Issue 6
  • DOI: 10.1038/nrmicro3262

Landscape topography structures the soil microbiome in arctic polygonal tundra
journal, February 2018

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
journal, October 2015

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015

  • Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T.
  • Genome Research, Vol. 25, Issue 7
  • DOI: 10.1101/gr.186072.114

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
journal, October 2014

  • Gittel, Antje; Bárta, Jiří; Kohoutová, Iva
  • Frontiers in Microbiology, Vol. 5
  • DOI: 10.3389/fmicb.2014.00541

Fast and sensitive taxonomic classification for metagenomics with Kaiju
journal, April 2016

  • Menzel, Peter; Ng, Kim Lee; Krogh, Anders
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms11257

Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
journal, December 2014

  • Deng, Jie; Gu, Yunfu; Zhang, Jin
  • Molecular Ecology, Vol. 24, Issue 1
  • DOI: 10.1111/mec.13015

Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
journal, July 2018

  • Müller, Oliver; Bang‐Andreasen, Toke; White, Richard Allen
  • Environmental Microbiology, Vol. 20, Issue 12
  • DOI: 10.1111/1462-2920.14348

MOCAT2: a metagenomic assembly, annotation and profiling framework
journal, April 2016

    [ × clear filter / sort ]

    Works referencing / citing this record:

    Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
    journal, August 2017

    • Bowers, Robert M.; Kyrpides, Nikos C.; Stepanauskas, Ramunas
    • Nature Biotechnology, Vol. 35, Issue 8
    • DOI: 10.1038/nbt.3893

    Fast and sensitive taxonomic classification for metagenomics with Kaiju
    journal, April 2016

    • Menzel, Peter; Ng, Kim Lee; Krogh, Anders
    • Nature Communications, Vol. 7, Issue 1
    • DOI: 10.1038/ncomms11257

    The microbial ecology of permafrost
    journal, May 2014

    • Jansson, Janet K.; Taş, Neslihan
    • Nature Reviews Microbiology, Vol. 12, Issue 6
    • DOI: 10.1038/nrmicro3262

    Landscape topography structures the soil microbiome in arctic polygonal tundra
    journal, February 2018

    Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
    journal, May 2018

    • Sieber, Christian M. K.; Probst, Alexander J.; Sharrar, Allison
    • Nature Microbiology, Vol. 3, Issue 7
    • DOI: 10.1038/s41564-018-0171-1

    MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
    journal, January 2015

    MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
    journal, October 2015

    MOCAT2: a metagenomic assembly, annotation and profiling framework
    journal, April 2016

    CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    journal, May 2015

    • Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T.
    • Genome Research, Vol. 25, Issue 7
    • DOI: 10.1101/gr.186072.114

    Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
    journal, July 2018

    • Müller, Oliver; Bang‐Andreasen, Toke; White, Richard Allen
    • Environmental Microbiology, Vol. 20, Issue 12
    • DOI: 10.1111/1462-2920.14348

    Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
    journal, December 2014

    • Deng, Jie; Gu, Yunfu; Zhang, Jin
    • Molecular Ecology, Vol. 24, Issue 1
    • DOI: 10.1111/mec.13015

    Permafrost Meta-Omics and Climate Change
    journal, June 2016

    Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
    journal, October 2014

    • Gittel, Antje; Bárta, Jiří; Kohoutová, Iva
    • Frontiers in Microbiology, Vol. 5
    • DOI: 10.3389/fmicb.2014.00541

    MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
    journal, January 2015

      [ × clear filter / sort ]

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