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Title: Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost

Journal Article · · Microbiology Resource Announcements
 [1];  [1];  [2];  [3]
  1. Bergen Univ. (Norway)
  2. Bergen Univ. (Norway); University Centre in Svalbard (UNIS) (Norway)
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

ABSTRACT Permafrost contains one of the least known soil microbiomes, where microbial populations reside in an ice-locked environment. Here, 56 prokaryotic metagenome-assembled genome (MAG) sequences from 13 phyla are reported. These MAGs will provide information on metabolic pathways that could mediate biogeochemical cycles in Svalbard permafrost.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); Norwegian Research Council
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1572795
Journal Information:
Microbiology Resource Announcements, Vol. 8, Issue 27; ISSN 2576-098X
Publisher:
SSPA - American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (25)

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph journal January 2015
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy journal May 2018
Permafrost Meta-Omics and Climate Change journal June 2016
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities journal January 2015
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea journal August 2017
The microbial ecology of permafrost journal May 2014
Landscape topography structures the soil microbiome in arctic polygonal tundra journal February 2018
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets journal October 2015
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland journal October 2014
Fast and sensitive taxonomic classification for metagenomics with Kaiju journal April 2016
Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska journal December 2014
Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates journal July 2018
MOCAT2: a metagenomic assembly, annotation and profiling framework journal April 2016
Diversity and composition of the North Sikkim hot spring mycobiome using a culture-independent method journal March 2021
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph preprint January 2014
Salinimonas marina sp. nov. Isolated from Jeju Island Marine Sediment journal June 2021
The microbial ecology of permafrost journal May 2014
Landscape topography structures the soil microbiome in arctic polygonal tundra journal February 2018
Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome journal December 2020
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph journal January 2015
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets journal October 2015
MOCAT2: a metagenomic assembly, annotation and profiling framework journal April 2016
Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska journal December 2014
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities journal January 2015