Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost
Abstract
ABSTRACT Permafrost contains one of the least known soil microbiomes, where microbial populations reside in an ice-locked environment. Here, 56 prokaryotic metagenome-assembled genome (MAG) sequences from 13 phyla are reported. These MAGs will provide information on metabolic pathways that could mediate biogeochemical cycles in Svalbard permafrost.
- Authors:
-
- Bergen Univ. (Norway)
- Bergen Univ. (Norway); University Centre in Svalbard (UNIS) (Norway)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); Norwegian Research Council
- OSTI Identifier:
- 1572795
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Microbiology Resource Announcements
- Additional Journal Information:
- Journal Volume: 8; Journal Issue: 27; Journal ID: ISSN 2576-098X
- Publisher:
- SSPA - American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, and Taş, Neslihan. Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost. United States: N. p., 2019.
Web. doi:10.1128/mra.00516-19.
Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, & Taş, Neslihan. Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost. United States. doi:https://doi.org/10.1128/mra.00516-19
Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, and Taş, Neslihan. Wed .
"Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost". United States. doi:https://doi.org/10.1128/mra.00516-19. https://www.osti.gov/servlets/purl/1572795.
@article{osti_1572795,
title = {Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost},
author = {Xue, Yaxin and Jonassen, Inge and Øvreås, Lise and Taş, Neslihan},
abstractNote = {ABSTRACT Permafrost contains one of the least known soil microbiomes, where microbial populations reside in an ice-locked environment. Here, 56 prokaryotic metagenome-assembled genome (MAG) sequences from 13 phyla are reported. These MAGs will provide information on metabolic pathways that could mediate biogeochemical cycles in Svalbard permafrost.},
doi = {10.1128/mra.00516-19},
journal = {Microbiology Resource Announcements},
number = 27,
volume = 8,
place = {United States},
year = {2019},
month = {7}
}
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Works referenced in this record:
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journal, October 2014
- Gittel, Antje; Bárta, JiÅ™Ã; Kohoutová, Iva
- Frontiers in Microbiology, Vol. 5
Fast and sensitive taxonomic classification for metagenomics with Kaiju
journal, April 2016
- Menzel, Peter; Ng, Kim Lee; Krogh, Anders
- Nature Communications, Vol. 7, Issue 1
Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
journal, December 2014
- Deng, Jie; Gu, Yunfu; Zhang, Jin
- Molecular Ecology, Vol. 24, Issue 1
Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
journal, July 2018
- Müller, Oliver; Bang‐Andreasen, Toke; White, Richard Allen
- Environmental Microbiology, Vol. 20, Issue 12
MOCAT2: a metagenomic assembly, annotation and profiling framework
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Works referencing / citing this record:
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
journal, August 2017
- Bowers, Robert M.; Kyrpides, Nikos C.; Stepanauskas, Ramunas
- Nature Biotechnology, Vol. 35, Issue 8
Fast and sensitive taxonomic classification for metagenomics with Kaiju
journal, April 2016
- Menzel, Peter; Ng, Kim Lee; Krogh, Anders
- Nature Communications, Vol. 7, Issue 1
The microbial ecology of permafrost
journal, May 2014
- Jansson, Janet K.; Taş, Neslihan
- Nature Reviews Microbiology, Vol. 12, Issue 6
Landscape topography structures the soil microbiome in arctic polygonal tundra
journal, February 2018
- Taş, Neslihan; Prestat, Emmanuel; Wang, Shi
- Nature Communications, Vol. 9, Issue 1
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
journal, May 2018
- Sieber, Christian M. K.; Probst, Alexander J.; Sharrar, Allison
- Nature Microbiology, Vol. 3, Issue 7
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
journal, January 2015
- Li, Dinghua; Liu, Chi-Man; Luo, Ruibang
- Bioinformatics, Vol. 31, Issue 10
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
journal, October 2015
- Wu, Yu-Wei; Simmons, Blake A.; Singer, Steven W.
- Bioinformatics, Vol. 32, Issue 4
MOCAT2: a metagenomic assembly, annotation and profiling framework
journal, April 2016
- Kultima, Jens Roat; Coelho, Luis Pedro; Forslund, Kristoffer
- Bioinformatics, Vol. 32, Issue 16
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015
- Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T.
- Genome Research, Vol. 25, Issue 7
Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
journal, July 2018
- Müller, Oliver; Bang‐Andreasen, Toke; White, Richard Allen
- Environmental Microbiology, Vol. 20, Issue 12
Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
journal, December 2014
- Deng, Jie; Gu, Yunfu; Zhang, Jin
- Molecular Ecology, Vol. 24, Issue 1
Permafrost Meta-Omics and Climate Change
journal, June 2016
- Mackelprang, Rachel; Saleska, Scott R.; Jacobsen, Carsten Suhr
- Annual Review of Earth and Planetary Sciences, Vol. 44, Issue 1
Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
journal, October 2014
- Gittel, Antje; Bárta, JiÅ™Ã; Kohoutová, Iva
- Frontiers in Microbiology, Vol. 5
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
journal, January 2015
- Kang, Dongwan D.; Froula, Jeff; Egan, Rob
- PeerJ, Vol. 3