Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost

Xue, Yaxin; Jonassen, Inge; Øvreås, Lise; Taş, Neslihan

doi:10.1128/mra.00516-19

Title: Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost

Abstract

ABSTRACT Permafrost contains one of the least known soil microbiomes, where microbial populations reside in an ice-locked environment. Here, 56 prokaryotic metagenome-assembled genome (MAG) sequences from 13 phyla are reported. These MAGs will provide information on metabolic pathways that could mediate biogeochemical cycles in Svalbard permafrost.

Authors:

Xue, Yaxin ^[1]; Jonassen, Inge ^[1]; Øvreås, Lise ^[2]; Taş, Neslihan ^[3]

Bergen Univ. (Norway)
Bergen Univ. (Norway); University Centre in Svalbard (UNIS) (Norway)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Publication Date:: 2019-07-03

Research Org.:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER); Norwegian Research Council

OSTI Identifier:: 1572795

Grant/Contract Number:: AC02-05CH11231

Resource Type:: Accepted Manuscript

Journal Name:: Microbiology Resource Announcements

Additional Journal Information:: Journal Volume: 8; Journal Issue: 27; Journal ID: ISSN 2576-098X

Publisher:: SSPA - American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES

Citation Formats


                    Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, and Taş, Neslihan. Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost.  United States: N. p., 2019. 
Web.  doi:10.1128/mra.00516-19.

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                    Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, & Taş, Neslihan. Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost.  United States.  https://doi.org/10.1128/mra.00516-19

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                    Xue, Yaxin, Jonassen, Inge, Øvreås, Lise, and Taş, Neslihan. Wed .  
"Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost".  United States.  https://doi.org/10.1128/mra.00516-19.  https://www.osti.gov/servlets/purl/1572795.

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@article{osti_1572795,

  title        = {Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost},

  author       = {Xue, Yaxin and Jonassen, Inge and Øvreås, Lise and Taş, Neslihan},

  abstractNote = {ABSTRACT Permafrost contains one of the least known soil microbiomes, where microbial populations reside in an ice-locked environment. Here, 56 prokaryotic metagenome-assembled genome (MAG) sequences from 13 phyla are reported. These MAGs will provide information on metabolic pathways that could mediate biogeochemical cycles in Svalbard permafrost.},

  doi          = {10.1128/mra.00516-19},

  journal      = {Microbiology Resource Announcements},

  number       = 27,

  volume       = 8,

  place        = {United States},

  year         = {2019},

  month        = {7}

}

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Journal Article:

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Works referenced in this record:

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Similar Records

Title: Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost

Abstract

Citation Formats

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph journal, January 2015

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy journal, May 2018

Permafrost Meta-Omics and Climate Change journal, June 2016

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities journal, January 2015

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea journal, August 2017

The microbial ecology of permafrost journal, May 2014

Landscape topography structures the soil microbiome in arctic polygonal tundra journal, February 2018

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets journal, October 2015

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal, May 2015

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland journal, October 2014

Fast and sensitive taxonomic classification for metagenomics with Kaiju journal, April 2016

Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska journal, December 2014

Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates journal, July 2018

MOCAT2: a metagenomic assembly, annotation and profiling framework journal, April 2016

Diversity and composition of the North Sikkim hot spring mycobiome using a culture-independent method journal, March 2021

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph preprint, January 2014

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
journal, January 2015

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
journal, May 2018

Permafrost Meta-Omics and Climate Change
journal, June 2016

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
journal, January 2015

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
journal, August 2017

The microbial ecology of permafrost
journal, May 2014

Landscape topography structures the soil microbiome in arctic polygonal tundra
journal, February 2018

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
journal, October 2015

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
journal, October 2014

Fast and sensitive taxonomic classification for metagenomics with Kaiju
journal, April 2016

Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
journal, December 2014

Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
journal, July 2018

MOCAT2: a metagenomic assembly, annotation and profiling framework
journal, April 2016

Diversity and composition of the North Sikkim hot spring mycobiome using a culture-independent method
journal, March 2021

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
preprint, January 2014