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Title: Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Abstract

The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.

Authors:
 [1];  [2];  [3];  [4];  [5];  [6];  [2];  [2];  [7];  [8];  [5];  [9];  [10];  [2];  [11];  [12];  [5];  [5];  [13];  [12] more »;  [14];  [15];  [16];  [2];  [5];  [17];  [13];  [18];  [19];  [15];  [11];  [20];  [12];  [12];  [21];  [2];  [22];  [23];  [4];  [24];  [25];  [13];  [15];  [2];  [26];  [5];  [27];  [2];  [28];  [2];  [16];  [28];  [29];  [30];  [31];  [5];  [2];  [32];  [21];  [2];  [33];  [10];  [18];  [30];  [34];  [35];  [5];  [5];  [35];  [36];  [37];  [29];  [6];  [2];  [2];  [38];  [39];  [40];  [41];  [30];  [30];  [18];  [42];  [28];  [5];  [13];  [43];  [44];  [18];  [45];  [46];  [2];  [38];  [5];  [2];  [47];  [48];  [2];  [47];  [49];  [50];  [2];  [25];  [51];  [18];  [43];  [25];  [52];  [30];  [2];  [53];  [10];  [4] « less
+ Show Author Affiliations
  1. Monash Univ. Melbourne (Australia)
  2. Kyoto Univ., Kyoto (Japan)
  3. Kindai Univ., Wakayama (Japan)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); HudsonAlpha Institute of Biotechnology, Huntsville, AL (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  6. Kobe Univ., Kobe (Japan)
  7. Research Organization of Information and Systems, Mishima (Japan)
  8. Austrian Academy of Sciences, Vienna Biocenter (VBC), Vienna (Austria)
  9. Nara Institute of Science and Technology, Nara (Japan)
  10. Univ. of Osnabrück, Osnabrück (Germany)
  11. Univ. Veracruzana, Veracruz (Mexico)
  12. Monash Univ., Melbourne (Australia)
  13. Univ. of Cambridge, Cambridge (United Kingdom)
  14. National Lab. of Genomics for Biodiversity, Guanajuato (Mexico)
  15. Univ. of Oxford, Oxford (United Kingdom)
  16. Univ. of Tennessee, Knoxville, TN (United States)
  17. The New Zealand Institute for Plant & Food Research Ltd., Palmerston North (New Zealand)
  18. Nara Inst. of Science and Technology, Nara (Japan)
  19. Monash Univ., Melbourne (Australia); Univ. of Osnabrück, Osnabrück (Germany)
  20. Monash Univ., Melbourne (Australia); Uppsala Univ., Uppsala (Sweden)
  21. National Inst. of Genetics, Mishima (Japan)
  22. Vienna Biocenter Core Facilities (VBCF), Vienna (Austria)
  23. Univ. de Montpellier, Montpellier (France)
  24. Univ.of Zurich, Zürich (Switzerland)
  25. The Univ. of Tokyo, Tokyo (Japan)
  26. Monash Univ., Melbourne (Australia); Nagoya Univ., Nagoya (Japan); Gakushuin Univ., Tokyo (Japan)
  27. Okayama Univ., Okayama (Japan)
  28. Nagoya Univ., Nagoya (Japan)
  29. National Inst. for Basic Biology, Okazaki (Japan); The Univ. of Tokyo, Tokyo (Japan)
  30. Tohoku Univ., Sendai (Japan)
  31. Austrian Academy of Sciences, Vienna (Austria); Univ. of Kentucky, Lexington, KY (United States)
  32. Gakushuin Univ., Tokyo (Japan); Nagoya Univ., Chikusa, Nagoya (Japan)
  33. Tokyo Univ. of Agriculture, Tokyo (Japan)
  34. Uppsala Univ., Uppsala (Sweden)
  35. National Taiwan Univ., Taipei (Taiwan)
  36. Inst. de Ecología, Veracruz (Mexico)
  37. Cold Spring Harbor Lab., Spring Harbor, NY (United States)
  38. Univ. Autónoma de Madrid, Madrid (Spain)
  39. The Univ. of Arizona, Tucson, AZ (United States)
  40. National Institute of Genetics, Mishima (Japan); Kazusa DNA Research Inst., Chiba (Japan)
  41. RIKEN Center for Sustainable Resource Science, Yokohama (Japan); Max Planck Inst. for Plant Breeding Research, Cologne (Germany)
  42. Tokyo Metropolitan Univ., Tokyo (Japan)
  43. Univ. of Minnesota, St. Paul, MN (United States)
  44. Univ. of Zurich, Zürich (Switzerland)
  45. Kumamoto Univ., Kumamoto (Japan)
  46. Univ. of Zurich, Zurich (Switzerland)
  47. The Univ. of Tokyo, Chiba (Japan)
  48. Kyoto Univ., Gokasho (Japan)
  49. Univ. Ulm, Ulm (Germany)
  50. Saitama Univ., Saitama (Japan)
  51. National Inst. for Basic Biology, Okazaki (Japan)
  52. Kyoto Univ., Uji (Japan)
  53. RIKEN Center for Sustainable Resource Science, Yokohama (Japan)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1543518
Alternate Identifier(s):
OSTI ID: 1572782
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Cell
Additional Journal Information:
Journal Volume: 171; Journal Issue: 2; Journal ID: ISSN 0092-8674
Publisher:
Elsevier
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Biochemistry & Molecular Biology; Cell Biology; Marchantia polymorpha; land plant evolution; auxin; sex chromosome; charophycean algae

Citation Formats

Bowman, John L., Kohchi, Takayuki, Yamato, Katsuyuki T., Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A., Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R., Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M., Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E., Eklund, D. Magnus, Florent, Stevie N., Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J., Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N., Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih -Shun, Lindquist, Erika, Lipzen, Anna M., Lu, Chia -Wei, De Luna, Efraín, Martienssen, Robert A., Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W., Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, Takenaka, Mizuki, Takezawa, Daisuke, Tomogane, Hirokazu, Tsuzuki, Masayuki, Ueda, Takashi, Umeda, Masaaki, Ward, John M., Watanabe, Yuichiro, Yazaki, Kazufumi, Yokoyama, Ryusuke, Yoshitake, Yoshihiro, Yotsui, Izumi, Zachgo, Sabine, and Schmutz, Jeremy. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. United States: N. p., 2017. Web. doi:10.1016/j.cell.2017.09.030.
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Bowman, John L., Kohchi, Takayuki, Yamato, Katsuyuki T., Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A., Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R., Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M., Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E., Eklund, D. Magnus, Florent, Stevie N., Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J., Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N., Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih -Shun, Lindquist, Erika, Lipzen, Anna M., Lu, Chia -Wei, De Luna, Efraín, Martienssen, Robert A., Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W., Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, Takenaka, Mizuki, Takezawa, Daisuke, Tomogane, Hirokazu, Tsuzuki, Masayuki, Ueda, Takashi, Umeda, Masaaki, Ward, John M., Watanabe, Yuichiro, Yazaki, Kazufumi, Yokoyama, Ryusuke, Yoshitake, Yoshihiro, Yotsui, Izumi, Zachgo, Sabine, & Schmutz, Jeremy. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. United States. https://doi.org/10.1016/j.cell.2017.09.030
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Bowman, John L., Kohchi, Takayuki, Yamato, Katsuyuki T., Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A., Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R., Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M., Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E., Eklund, D. Magnus, Florent, Stevie N., Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J., Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N., Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih -Shun, Lindquist, Erika, Lipzen, Anna M., Lu, Chia -Wei, De Luna, Efraín, Martienssen, Robert A., Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W., Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, Takenaka, Mizuki, Takezawa, Daisuke, Tomogane, Hirokazu, Tsuzuki, Masayuki, Ueda, Takashi, Umeda, Masaaki, Ward, John M., Watanabe, Yuichiro, Yazaki, Kazufumi, Yokoyama, Ryusuke, Yoshitake, Yoshihiro, Yotsui, Izumi, Zachgo, Sabine, and Schmutz, Jeremy. Thu . "Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome". United States. https://doi.org/10.1016/j.cell.2017.09.030. https://www.osti.gov/servlets/purl/1543518.
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@article{osti_1543518,
title = {Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome},
author = {Bowman, John L. and Kohchi, Takayuki and Yamato, Katsuyuki T. and Jenkins, Jerry and Shu, Shengqiang and Ishizaki, Kimitsune and Yamaoka, Shohei and Nishihama, Ryuichi and Nakamura, Yasukazu and Berger, Frédéric and Adam, Catherine and Aki, Shiori Sugamata and Althoff, Felix and Araki, Takashi and Arteaga-Vazquez, Mario A. and Balasubrmanian, Sureshkumar and Barry, Kerrie and Bauer, Diane and Boehm, Christian R. and Briginshaw, Liam and Caballero-Perez, Juan and Catarino, Bruno and Chen, Feng and Chiyoda, Shota and Chovatia, Mansi and Davies, Kevin M. and Delmans, Mihails and Demura, Taku and Dierschke, Tom and Dolan, Liam and Dorantes-Acosta, Ana E. and Eklund, D. Magnus and Florent, Stevie N. and Flores-Sandoval, Eduardo and Fujiyama, Asao and Fukuzawa, Hideya and Galik, Bence and Grimanelli, Daniel and Grimwood, Jane and Grossniklaus, Ueli and Hamada, Takahiro and Haseloff, Jim and Hetherington, Alexander J. and Higo, Asuka and Hirakawa, Yuki and Hundley, Hope N. and Ikeda, Yoko and Inoue, Keisuke and Inoue, Shin-ichiro and Ishida, Sakiko and Jia, Qidong and Kakita, Mitsuru and Kanazawa, Takehiko and Kawai, Yosuke and Kawashima, Tomokazu and Kennedy, Megan and Kinose, Keita and Kinoshita, Toshinori and Kohara, Yuji and Koide, Eri and Komatsu, Kenji and Kopischke, Sarah and Kubo, Minoru and Kyozuka, Junko and Lagercrantz, Ulf and Lin, Shih -Shun and Lindquist, Erika and Lipzen, Anna M. and Lu, Chia -Wei and De Luna, Efraín and Martienssen, Robert A. and Minamino, Naoki and Mizutani, Masaharu and Mizutani, Miya and Mochizuki, Nobuyoshi and Monte, Isabel and Mosher, Rebecca and Nagasaki, Hideki and Nakagami, Hirofumi and Naramoto, Satoshi and Nishitani, Kazuhiko and Ohtani, Misato and Okamoto, Takashi and Okumura, Masaki and Phillips, Jeremy and Pollak, Bernardo and Reinders, Anke and Rövekamp, Moritz and Sano, Ryosuke and Sawa, Shinichiro and Schmid, Marc W. and Shirakawa, Makoto and Solano, Roberto and Spunde, Alexander and Suetsugu, Noriyuki and Sugano, Sumio and Sugiyama, Akifumi and Sun, Rui and Suzuki, Yutaka and Takenaka, Mizuki and Takezawa, Daisuke and Tomogane, Hirokazu and Tsuzuki, Masayuki and Ueda, Takashi and Umeda, Masaaki and Ward, John M. and Watanabe, Yuichiro and Yazaki, Kazufumi and Yokoyama, Ryusuke and Yoshitake, Yoshihiro and Yotsui, Izumi and Zachgo, Sabine and Schmutz, Jeremy},
abstractNote = {The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.},
doi = {10.1016/j.cell.2017.09.030},
journal = {Cell},
number = 2,
volume = 171,
place = {United States},
year = {Thu Oct 05 00:00:00 EDT 2017},
month = {Thu Oct 05 00:00:00 EDT 2017}
}
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    • Williams, Clara; Fernández-Calvo, Patricia; Colinas, Maite
    • Journal of Experimental Botany, Vol. 70, Issue 13
    • DOI: 10.1093/jxb/erz272

    Cloning and Molecular Characterization of CcNRT2.1/CcNAR2, a Putative Inducible High Affinity Nitrate Transport System in Capsicum chinense Jacq. Roots
    journal, January 2020

    • Lizama-Gasca, Marta G.; Estrada-Tapia, Georgina; Escalante-Magaña, Camilo A.
    • Tropical Plant Biology, Vol. 13, Issue 1
    • DOI: 10.1007/s12042-019-09248-w

    Deciphering the Evolution and Development of the Cuticle by Studying Lipid Transfer Proteins in Mosses and Liverworts
    journal, January 2018

    Structural basis for brassinosteroid response by BIL1/BZR1
    journal, October 2018

    Building new insights in plant gametogenesis from an evolutionary perspective
    journal, July 2019

    UVR8-mediated induction of flavonoid biosynthesis for UVB tolerance is conserved between the liverwort Marchantia polymorpha and flowering plants
    journal, August 2018

    • Clayton, William A.; Albert, Nick W.; Thrimawithana, Amali H.
    • The Plant Journal, Vol. 96, Issue 3
    • DOI: 10.1111/tpj.14044

    Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage.
    text, January 2018

    • Carella, Philip; Gogleva, Anna; Tomaselli, Marta
    • Apollo - University of Cambridge Repository
    • DOI: 10.17863/cam.23638

    A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha
    journal, December 2019

    • Diop, Seydina I.; Subotic, Oliver; Giraldo‐Fonseca, Alejandro
    • The Plant Journal, Vol. 101, Issue 6
    • DOI: 10.1111/tpj.14602

    Negative regulation of conserved RSL class I bHLH transcription factors evolved independently among land plants
    journal, August 2018

    • Honkanen, Suvi; Thamm, Anna; Arteaga-Vazquez, Mario A.
    • eLife, Vol. 7
    • DOI: 10.7554/elife.38529

    Improved G-AgarTrap: A highly efficient transformation method for intact gemmalings of the liverwort Marchantia polymorpha
    journal, July 2018

    DNA methylation in Marchantia polymorpha
    journal, April 2019

    • Aguilar‐Cruz, Adolfo; Grimanelli, Daniel; Haseloff, Jim
    • New Phytologist, Vol. 223, Issue 2
    • DOI: 10.1111/nph.15818

    EMS1 and BRI1 control separate biological processes via extracellular domain diversity and intracellular domain conservation
    journal, September 2019

    Ethylene Receptors in Nonplant Species
    journal, July 2019

    Jasmonate action in plant defense against insects
    journal, April 2019

    • Wang, Jiaojiao; Wu, Dewei; Wang, Youping
    • Journal of Experimental Botany, Vol. 70, Issue 13
    • DOI: 10.1093/jxb/erz174

    Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts.
    journalarticle, January 2020

    • Li, Fay-Wei; Nishiyama, Tomoaki; Waller, Manuel
    • Springer Science and Business Media LLC
    • DOI: 10.17863/cam.68772

    Neofunctionalisation of basic helix−loop−helix proteins occurred when embryophytes colonised the land
    journal, April 2019

    • Bonnot, Clémence; Hetherington, Alexander J.; Champion, Clément
    • New Phytologist, Vol. 223, Issue 2
    • DOI: 10.1111/nph.15829

    Auronidins are a previously unreported class of flavonoid pigments that challenges when anthocyanin biosynthesis evolved in plants
    journal, September 2019

    • Berland, Helge; Albert, Nick W.; Stavland, Anne
    • Proceedings of the National Academy of Sciences, Vol. 116, Issue 40
    • DOI: 10.1073/pnas.1912741116

    Mp TCP 1 controls cell proliferation and redox processes in Marchantia polymorpha
    journal, October 2019

    • Busch, Andrea; Deckena, Marek; Almeida‐Trapp, Marilia
    • New Phytologist, Vol. 224, Issue 4
    • DOI: 10.1111/nph.16132

    The role of P-type IIA and P-type IIB Ca2+-ATPases in plant development and growth
    journal, November 2019

    • García Bossi, Julián; Kumar, Krishna; Barberini, María Laura
    • Journal of Experimental Botany, Vol. 71, Issue 4
    • DOI: 10.1093/jxb/erz521

    Seasonal variation of secondary metabolites in nine different bryophytes
    journal, August 2018

    • Peters, Kristian; Gorzolka, Karin; Bruelheide, Helge
    • Ecology and Evolution, Vol. 8, Issue 17
    • DOI: 10.1002/ece3.4361

    Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants
    journal, December 2018

    The Origin and Evolution of Plant Flavonoid Metabolism
    journal, August 2019

    • Yonekura-Sakakibara, Keiko; Higashi, Yasuhiro; Nakabayashi, Ryo
    • Frontiers in Plant Science, Vol. 10
    • DOI: 10.3389/fpls.2019.00943

    A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs
    journal, December 2019

    AHK3-Mediated Cytokinin Signaling Is Required for the Delayed Leaf Senescence Induced by SSPP
    journal, April 2019

    • Wang, Yanan; Zhang, Xiyu; Cui, Yanjiao
    • International Journal of Molecular Sciences, Vol. 20, Issue 8
    • DOI: 10.3390/ijms20082043

    Genome of the tropical plant Marchantia inflexa: implications for sex chromosome evolution and dehydration tolerance
    journal, June 2019

    Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha
    journal, October 2018

    Evolution and diversification of the plant gibberellin receptor GID1
    journal, August 2018

    • Yoshida, Hideki; Tanimoto, Eiichi; Hirai, Takaaki
    • Proceedings of the National Academy of Sciences, Vol. 115, Issue 33
    • DOI: 10.1073/pnas.1806040115

    Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
    journal, January 2018

    • Schmid, Marc W.; Giraldo-Fonseca, Alejandro; Rövekamp, Moritz
    • Genome Biology, Vol. 19, Issue 1
    • DOI: 10.1186/s13059-017-1383-z

    MicroRNAs in Marchantia polymorpha
    journal, June 2018

    • Lin, Shih-Shun; Bowman, John L.
    • New Phytologist, Vol. 220, Issue 2
    • DOI: 10.1111/nph.15294

    Marchantia liverworts as a proxy to plants’ basal microbiomes
    journal, August 2018

    Mesostigma viride Genome and Transcriptome Provide Insights into the Origin and Evolution of Streptophyta
    journal, October 2019

    Physcomitrella STEMIN transcription factor induces stem cell formation with epigenetic reprogramming
    journal, July 2019

    Oxygen-dependent proteolysis regulates the stability of angiosperm polycomb repressive complex 2 subunit VERNALIZATION 2
    journal, December 2018

    • Gibbs, Daniel J.; Tedds, Hannah M.; Labandera, Anne-Marie
    • Nature Communications, Vol. 9, Issue 1
    • DOI: 10.1038/s41467-018-07875-7

    Getting to the Roots: A Developmental Genetic View of Root Anatomy and Function From Arabidopsis to Lycophytes
    journal, September 2018

    Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
    text, January 2020

    • Li, Fay-Wei; Nishiyama, Tomoaki; Waller, Manuel
    • Nature Publishing Group
    • DOI: 10.5167/uzh-186476

    ANGUSTIFOLIA contributes to the regulation of three-dimensional morphogenesis in the liverwort Marchantia polymorpha
    journal, August 2018

    • Furuya, Tomoyuki; Hattori, Koro; Kimori, Yoshitaka
    • Development, Vol. 145, Issue 18
    • DOI: 10.1242/dev.161398

    A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha
    text, January 2020

    • Diop, Seydina I.; Subotic, Oliver; Giraldo‐Fonseca, Alejandro
    • Blackwell Science
    • DOI: 10.7892/boris.137475

    The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics
    journal, March 2018

    • Strullu-Derrien, Christine; Selosse, Marc-André; Kenrick, Paul
    • New Phytologist, Vol. 220, Issue 4
    • DOI: 10.1111/nph.15076

    Evolution of fast root gravitropism in seed plants
    journal, August 2019

    Ancient plants with ancient fungi: liverworts associate with early-diverging arbuscular mycorrhizal fungi
    journal, October 2018

    • Rimington, William R.; Pressel, Silvia; Duckett, Jeffrey G.
    • Proceedings of the Royal Society B: Biological Sciences, Vol. 285, Issue 1888
    • DOI: 10.1098/rspb.2018.1600

    Evolution Analysis of the Fasciclin-Like Arabinogalactan Proteins in Plants Shows Variable Fasciclin-AGP Domain Constitutions
    journal, April 2019

    • He, Jiadai; Zhao, Hua; Cheng, Zhilu
    • International Journal of Molecular Sciences, Vol. 20, Issue 8
    • DOI: 10.3390/ijms20081945

    A cis ‐acting bidirectional transcription switch controls sexual dimorphism in the liverwort
    journal, January 2019

    • Hisanaga, Tetsuya; Okahashi, Keitaro; Yamaoka, Shohei
    • The EMBO Journal, Vol. 38, Issue 6
    • DOI: 10.15252/embj.2018100240

    The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly
    journal, December 2019

    An ancient antisense‐driven RNA switch drives plant sex determination
    journal, February 2019

    Evolution of Polycomb-group function in the green lineage
    journal, January 2019

    Cytokinin Signaling Is Essential for Organ Formation in Marchantia polymorpha
    journal, May 2019

    • Aki, Shiori S.; Mikami, Tatsuya; Naramoto, Satoshi
    • Plant and Cell Physiology, Vol. 60, Issue 8
    • DOI: 10.1093/pcp/pcz100

    Comparison and optimization of protein extraction and two-dimensional gel electrophoresis protocols for liverworts
    journal, February 2020

    • Yadav, Sandhya; Srivastava, Akanksha; Biswas, Subhankar
    • BMC Research Notes, Vol. 13, Issue 1
    • DOI: 10.1186/s13104-020-4929-1

    Evolutionary Analysis of JAZ Proteins in Plants: An Approach in Search of the Ancestral Sequence
    journal, October 2019

    • Garrido-Bigotes, Adrián; Valenzuela-Riffo, Felipe; Figueroa, Carlos
    • International Journal of Molecular Sciences, Vol. 20, Issue 20
    • DOI: 10.3390/ijms20205060

    Evolution of the Auxin Response Factors from charophyte ancestors
    journal, September 2019

    Fern genomes elucidate land plant evolution and cyanobacterial symbioses
    journal, July 2018

    A phosphorylation-based switch controls TAA1-mediated auxin biosynthesis in plants
    journal, February 2020

    The complete mitochondrial genome of Dumortiera hirsuta (Sw.) Nees (Dumortieraceae, Marchantiophyta)
    journal, January 2019

    Aux/IAA Gene Family in Plants: Molecular Structure, Regulation, and Function
    journal, January 2018

    • Luo, Jie; Zhou, Jing-Jing; Zhang, Jin-Zhi
    • International Journal of Molecular Sciences, Vol. 19, Issue 1
    • DOI: 10.3390/ijms19010259

    Minimal auxin sensing levels in vegetative moss stem cells revealed by a ratiometric reporter
    journal, June 2019

    • Thelander, Mattias; Landberg, Katarina; Sundberg, Eva
    • New Phytologist, Vol. 224, Issue 2
    • DOI: 10.1111/nph.16068

    Genomes of early-diverging streptophyte algae shed light on plant terrestrialization
    journal, December 2019

    Regulation of Photosynthetic Carbohydrate Metabolism by a Raf-Like Kinase in the Liverwort Marchantia polymorpha
    journal, December 2019

    • Koide, Eri; Suetsugu, Noriyuki; Iwano, Megumi
    • Plant and Cell Physiology, Vol. 61, Issue 3
    • DOI: 10.1093/pcp/pcz232

    Class C ARFs evolved before the origin of land plants and antagonize differentiation and developmental transitions in Marchantia polymorpha
    journal, March 2018

    • Flores-Sandoval, Eduardo; Eklund, D. Magnus; Hong, Syuan-Fei
    • New Phytologist, Vol. 218, Issue 4
    • DOI: 10.1111/nph.15090

    RAB GTPases in the Basal Land Plant Marchantia polymorpha
    journal, February 2018

    • Minamino, Naoki; Kanazawa, Takehiko; Era, Atsuko
    • Plant and Cell Physiology, Vol. 59, Issue 4
    • DOI: 10.1093/pcp/pcy027

    Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage
    journal, April 2018

    • Carella, Philip; Gogleva, Anna; Tomaselli, Marta
    • Proceedings of the National Academy of Sciences, Vol. 115, Issue 16
    • DOI: 10.1073/pnas.1717900115

    Evolutionary history and structure of nuclear matrix constituent proteins, the plant analogues of lamins
    journal, March 2019

    • Ciska, Malgorzata; Hikida, Riku; Masuda, Kiyoshi
    • Journal of Experimental Botany, Vol. 70, Issue 10
    • DOI: 10.1093/jxb/erz102

    The Roles of Auxin Biosynthesis YUCCA Gene Family in Plants
    journal, December 2019

    • Cao, Xu; Yang, Honglei; Shang, Chunqiong
    • International Journal of Molecular Sciences, Vol. 20, Issue 24
    • DOI: 10.3390/ijms20246343

    Darkness-induced effects on gene expression in Cosmarium crenatum (Zygnematophyceae) from a polar habitat
    journal, July 2019

    An Evolutionarily Conserved Receptor-like Kinases Signaling Module Controls Cell Wall Integrity During Tip Growth
    journal, December 2019

    • Westermann, Jens; Streubel, Susanna; Franck, Christina Maria
    • Current Biology, Vol. 29, Issue 23
    • DOI: 10.1016/j.cub.2019.11.010

    Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
    journal, March 2020

    Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
    text, January 2018

    • W., Schmid, Marc; Alejandro, Giraldo-Fonseca,; Moritz, Rövekamp,
    • BioMed Central
    • DOI: 10.5167/uzh-165512

    A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha
    text, January 2020

    • Diop, Seydina I.; Subotic, Oliver; Giraldo‐Fonseca, Alejandro
    • Wiley-Blackwell Publishing, Inc.
    • DOI: 10.5167/uzh-178941

    Gene gains paved the path to land
    journal, January 2020

    Protein S ‐Nitrosylation in plants: Current progresses and challenges
    journal, March 2019

    • Feng, Jian; Chen, Lichao; Zuo, Jianru
    • Journal of Integrative Plant Biology, Vol. 61, Issue 12
    • DOI: 10.1111/jipb.12780

    Evolution of the Symbiosis-Specific GRAS Regulatory Network in Bryophytes
    journal, November 2018

    • Grosche, Christopher; Genau, Anne Christina; Rensing, Stefan A.
    • Frontiers in Plant Science, Vol. 9
    • DOI: 10.3389/fpls.2018.01621

    Cytokinin signaling coordinates development of diverse organs in Marchantia polymorpha
    journal, September 2019

    Origin of Gibberellin-Dependent Transcriptional Regulation by Molecular Exploitation of a Transactivation Domain in DELLA Proteins
    journal, January 2019

    • Hernández-García, Jorge; Briones-Moreno, Asier; Dumas, Renaud
    • Molecular Biology and Evolution, Vol. 36, Issue 5
    • DOI: 10.1093/molbev/msz009

    Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha
    journal, March 2019

    Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae
    journal, December 2017

    • Wilhelmsson, Per K. I.; Mühlich, Cornelia; Ullrich, Kristian K.
    • Genome Biology and Evolution, Vol. 9, Issue 12
    • DOI: 10.1093/gbe/evx258

    Physcomitrella patens MAX2 characterization suggests an ancient role for this F-box protein in photomorphogenesis rather than strigolactone signalling
    journal, May 2018

    • Lopez-Obando, Mauricio; de Villiers, Ruan; Hoffmann, Beate
    • New Phytologist, Vol. 219, Issue 2
    • DOI: 10.1111/nph.15214

    Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin
    journal, February 2020

    Demystifying the liverwort Radula marginata, a critical review on its taxonomy, genetics, cannabinoid phytochemistry and pharmacology
    journal, June 2019

    OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice
    journal, May 2019

    • Liu, Defang; Shi, Shaopeng; Hao, Zhijun
    • International Journal of Molecular Sciences, Vol. 20, Issue 9
    • DOI: 10.3390/ijms20092360

    Gene refashioning through innovative shifting of reading frames in mosses
    journal, April 2018

    Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic)
    journal, September 2019

    • Rippin, Martin; Pichrtová, Martina; Arc, Erwann
    • Environmental Microbiology, Vol. 21, Issue 11
    • DOI: 10.1111/1462-2920.14788

    Aberrant protein phosphatase 2C leads to abscisic acid insensitivity and high transpiration in parasitic Striga
    journal, February 2019

    COP1 destabilizes DELLA proteins in Arabidopsis
    journal, May 2020

    • Blanco-Touriñán, Noel; Legris, Martina; Minguet, Eugenio G.
    • Proceedings of the National Academy of Sciences, Vol. 117, Issue 24
    • DOI: 10.1073/pnas.1907969117

    UV Chromosomes and Haploid Sexual Systems
    journal, September 2018

    • Coelho, Susana Margarida; Gueno, Josselin; Lipinska, Agnieszka Paulina
    • Trends in Plant Science, Vol. 23, Issue 9
    • DOI: 10.1016/j.tplants.2018.06.005

    Gene refashioning through innovative shifting of reading frames in mosses
    journal, April 2018

    Evolution of fast root gravitropism in seed plants
    journal, August 2019

    EMS1 and BRI1 control separate biological processes via extracellular domain diversity and intracellular domain conservation
    journal, September 2019

    The hornwort genome and early land plant evolution
    journal, February 2020

    Marchantia liverworts as a proxy to plants’ basal microbiomes
    journal, August 2018

    Genome of the tropical plant Marchantia inflexa: implications for sex chromosome evolution and dehydration tolerance
    journal, June 2019

    Darkness-induced effects on gene expression in Cosmarium crenatum (Zygnematophyceae) from a polar habitat
    journal, July 2019

    The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly
    journal, December 2019

    Plant science’s next top models
    journal, April 2020

    • Cesarino, Igor; Dello Ioio, Raffaele; Kirschner, Gwendolyn K.
    • Annals of Botany, Vol. 126, Issue 1
    • DOI: 10.1093/aob/mcaa063

    Origin and Diversity of Plant Receptor-Like Kinases
    journal, April 2020

    Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
    journal, January 2018

    • Schmid, Marc W.; Giraldo-Fonseca, Alejandro; Rövekamp, Moritz
    • Genome Biology, Vol. 19, Issue 1
    • DOI: 10.1186/s13059-017-1383-z

    Comparison and optimization of protein extraction and two-dimensional gel electrophoresis protocols for liverworts
    journal, February 2020

    • Yadav, Sandhya; Srivastava, Akanksha; Biswas, Subhankar
    • BMC Research Notes, Vol. 13, Issue 1
    • DOI: 10.1186/s13104-020-4929-1

    Evolution of Polycomb-group function in the green lineage
    journal, January 2019

    A conserved regulatory mechanism mediates the convergent evolution of plant shoot lateral organs
    journal, December 2019

    Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha
    journal, March 2019

    Evolution of the Auxin Response Factors from charophyte ancestors
    journal, September 2019

    Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes
    journal, April 2018

    Messages From the Past: New Insights in Plant Lectin Evolution
    journal, January 2019

    Evolutionary Developments in Plant Specialized Metabolism, Exemplified by Two Transferase Families
    journal, June 2019

    Marchantia polymorpha, a New Model Plant for Autophagy Studies
    journal, July 2019

    • Norizuki, Takuya; Kanazawa, Takehiko; Minamino, Naoki
    • Frontiers in Plant Science, Vol. 10
    • DOI: 10.3389/fpls.2019.00935

    The Origin and Evolution of Plant Flavonoid Metabolism
    journal, August 2019

    • Yonekura-Sakakibara, Keiko; Higashi, Yasuhiro; Nakabayashi, Ryo
    • Frontiers in Plant Science, Vol. 10
    • DOI: 10.3389/fpls.2019.00943

    A Method for Evaluating Three-Dimensional Morphological Features: A Case Study Using Marchantia polymorpha
    journal, October 2019

    • Furuya, Tomoyuki; Kimori, Yoshitaka; Tsukaya, Hirokazu
    • Frontiers in Plant Science, Vol. 10
    • DOI: 10.3389/fpls.2019.01214

    Aux/IAA Gene Family in Plants: Molecular Structure, Regulation, and Function
    journal, January 2018

    • Luo, Jie; Zhou, Jing-Jing; Zhang, Jin-Zhi
    • International Journal of Molecular Sciences, Vol. 19, Issue 1
    • DOI: 10.3390/ijms19010259

    Jasmonates: News on Occurrence, Biosynthesis, Metabolism and Action of an Ancient Group of Signaling Compounds
    journal, August 2018

    • Wasternack, Claus; Strnad, Miroslav
    • International Journal of Molecular Sciences, Vol. 19, Issue 9
    • DOI: 10.3390/ijms19092539

    AHK3-Mediated Cytokinin Signaling Is Required for the Delayed Leaf Senescence Induced by SSPP
    journal, April 2019

    • Wang, Yanan; Zhang, Xiyu; Cui, Yanjiao
    • International Journal of Molecular Sciences, Vol. 20, Issue 8
    • DOI: 10.3390/ijms20082043

    OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice
    journal, May 2019

    • Liu, Defang; Shi, Shaopeng; Hao, Zhijun
    • International Journal of Molecular Sciences, Vol. 20, Issue 9
    • DOI: 10.3390/ijms20092360

    Evolutionary and Comparative Expression Analyses of TCP Transcription Factor Gene Family in Land Plants
    journal, July 2019

    • Liu, Ming-Ming; Wang, Mang-Mang; Yang, Jin
    • International Journal of Molecular Sciences, Vol. 20, Issue 14
    • DOI: 10.3390/ijms20143591

    Evolutionary Analysis of JAZ Proteins in Plants: An Approach in Search of the Ancestral Sequence
    journal, October 2019

    • Garrido-Bigotes, Adrián; Valenzuela-Riffo, Felipe; Figueroa, Carlos
    • International Journal of Molecular Sciences, Vol. 20, Issue 20
    • DOI: 10.3390/ijms20205060

    The Roles of Auxin Biosynthesis YUCCA Gene Family in Plants
    journal, December 2019

    • Cao, Xu; Yang, Honglei; Shang, Chunqiong
    • International Journal of Molecular Sciences, Vol. 20, Issue 24
    • DOI: 10.3390/ijms20246343

    Recent Advances in Plant Chemical Biology of Jasmonates
    journal, February 2020

    Deciphering the Evolution and Development of the Cuticle by Studying Lipid Transfer Proteins in Mosses and Liverworts
    journal, January 2018

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