Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides

Garcia, Cecelia A.; Narrett, Jackson A.; Gardner, Jeffrey G.; Cameron Thrash, J.

doi:10.1128/MRA.01077-19

Title: Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides

Abstract

Cellvibrio japonicus is a saprophytic bacterium that has been studied for its substantial carbohydrate degradation capability. We announce the genome sequences of three strains with improved growth characteristics when utilizing α-diglucosides. These data provide additional insight into the metabolic flexibility of a biotechnologically relevant bacterium.

Authors:

Garcia, Cecelia A.; Narrett, Jackson A.;

; Cameron Thrash, J.

Publication Date:: 2019-10-31

Research Org.:: Univ. of Maryland Baltimore County (UMBC), Baltimore, MD (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

OSTI Identifier:: 1572430

Alternate Identifier(s):: OSTI ID: 1602748

Grant/Contract Number:: SC0014183

Resource Type:: Published Article

Journal Name:: Microbiology Resource Announcements

Additional Journal Information:: Journal Name: Microbiology Resource Announcements Journal Volume: 8 Journal Issue: 44; Journal ID: ISSN 2576-098X

Publisher:: SSPA - American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 60 APPLIED LIFE SCIENCES

Citation Formats


                    Garcia, Cecelia A., Narrett, Jackson A., Gardner, Jeffrey G., and Cameron Thrash, J. Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides.  United States: N. p., 2019. 
Web.  doi:10.1128/MRA.01077-19.

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                    Garcia, Cecelia A., Narrett, Jackson A., Gardner, Jeffrey G., & Cameron Thrash, J. Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides.  United States.  https://doi.org/10.1128/MRA.01077-19

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                    Garcia, Cecelia A., Narrett, Jackson A., Gardner, Jeffrey G., and Cameron Thrash, J. Thu .  
"Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides".  United States.  https://doi.org/10.1128/MRA.01077-19.

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@article{osti_1572430,

  title        = {Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides},

  author       = {Garcia, Cecelia A. and Narrett, Jackson A. and Gardner, Jeffrey G. and Cameron Thrash, J.},

  abstractNote = {Cellvibrio japonicus is a saprophytic bacterium that has been studied for its substantial carbohydrate degradation capability. We announce the genome sequences of three strains with improved growth characteristics when utilizing α-diglucosides. These data provide additional insight into the metabolic flexibility of a biotechnologically relevant bacterium.},

  doi          = {10.1128/MRA.01077-19},

  journal      = {Microbiology Resource Announcements},

  number       = 44,

  volume       = 8,

  place        = {United States},

  year         = {2019},

  month        = {10}

}

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Works referenced in this record:

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Nelson, Cassandra E.; Attia, Mohamed A.; Rogowski, Artur
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Blake, Andrew D.; Beri, Nina R.; Guttman, Hadassa S.
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Title: Complete Genome Sequences of Cellvibrio japonicus Strains with Improved Growth When Using α-Diglucosides

Abstract

Citation Formats

In-Frame Deletions Allow Functional Characterization of Complex Cellulose Degradation Phenotypes in Cellvibrio japonicus journal, June 2015

Quantification of massively parallel sequencing libraries – a comparative study of eight methods journal, January 2018

Comprehensive functional characterization of the glycoside hydrolase family 3 enzymes from Cellvibrio japonicus reveals unique metabolic roles in biomass saccharification : Complex glucan utilization in journal, December 2017

The complex physiology of Cellvibrio japonicus xylan degradation relies on a single cytoplasmic β-xylosidase for xylo-oligosaccharide utilization : Xylan degradation in journal, January 2018

Systems analysis in Cellvibrio japonicus resolves predicted redundancy of β-glucosidases and determines essential physiological functions : Functional analysis of journal, February 2017

NCBI prokaryotic genome annotation pipeline journal, June 2016

Reclassification of 'Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev. journal, March 2003

Systems analysis of the glycoside hydrolase family 18 enzymes from Cellvibrio japonicus characterizes essential chitin degradation functions journal, January 2018

Characterization of the cellulose-degrading bacterium NCIMB 10462 journal, September 1995

The carbohydrate-active enzymes database (CAZy) in 2013 journal, November 2013

Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus journal, June 2008

Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus journal, June 2016

In vitro and in vivo characterization of three Cellvibrio japonicus glycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions journal, February 2018

Studies on the Aerobic Mesophilic Cellulose-decomposing Bacteria [好氣性中温性纎維素醗酵菌に關する研究] journal, January 1952

In-Frame Deletions Allow Functional Characterization of Complex Cellulose Degradation Phenotypes in Cellvibrio japonicus
journal, June 2015

Quantification of massively parallel sequencing libraries – a comparative study of eight methods
journal, January 2018

Comprehensive functional characterization of the glycoside hydrolase family 3 enzymes from Cellvibrio japonicus reveals unique metabolic roles in biomass saccharification : Complex glucan utilization in
journal, December 2017

The complex physiology of Cellvibrio japonicus xylan degradation relies on a single cytoplasmic β-xylosidase for xylo-oligosaccharide utilization : Xylan degradation in
journal, January 2018

Systems analysis in Cellvibrio japonicus resolves predicted redundancy of β-glucosidases and determines essential physiological functions : Functional analysis of
journal, February 2017

NCBI prokaryotic genome annotation pipeline
journal, June 2016

Reclassification of 'Pseudomonas fluorescens subsp. cellulosa' NCIMB 10462 (Ueda et al. 1952) as Cellvibrio japonicus sp. nov. and revival of Cellvibrio vulgaris sp. nov., nom. rev. and Cellvibrio fulvus sp. nov., nom. rev.
journal, March 2003

Systems analysis of the glycoside hydrolase family 18 enzymes from Cellvibrio japonicus characterizes essential chitin degradation functions
journal, January 2018

Characterization of the cellulose-degrading bacterium NCIMB 10462
journal, September 1995

The carbohydrate-active enzymes database (CAZy) in 2013
journal, November 2013

Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus
journal, June 2008

Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus
journal, June 2016

In vitro and in vivo characterization of three Cellvibrio japonicus glycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions
journal, February 2018

Studies on the Aerobic Mesophilic Cellulose-decomposing Bacteria [好氣性中温性纎維素醗酵菌に關する研究]
journal, January 1952