Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol

doi:10.1016/j.ymben.2019.10.004

Title: Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol

Full Record
Other Related Research

Authors:: Nguyen, Anh Duc; Park, Joon Young; Hwang, In Yeub; Hamilton, Richard; Kalyuzhnaya, Marina G.; Kim, Donghyuk; Lee, Eun Yeol

Publication Date:: 2020-01-01

Sponsoring Org.:: USDOE

OSTI Identifier:: 1571700

Grant/Contract Number:: FOA DE-FOA-0001085

Resource Type:: Publisher's Accepted Manuscript

Journal Name:: Metabolic Engineering

Additional Journal Information:: Journal Name: Metabolic Engineering Journal Volume: 57 Journal Issue: C; Journal ID: ISSN 1096-7176

Publisher:: Elsevier

Country of Publication:: Belgium

Language:: English

Citation Formats


                    Nguyen, Anh Duc, Park, Joon Young, Hwang, In Yeub, Hamilton, Richard, Kalyuzhnaya, Marina G., Kim, Donghyuk, and Lee, Eun Yeol. Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol.  Belgium: N. p., 2020. 
        Web.  doi:10.1016/j.ymben.2019.10.004.

Copy to clipboard


                    Nguyen, Anh Duc, Park, Joon Young, Hwang, In Yeub, Hamilton, Richard, Kalyuzhnaya, Marina G., Kim, Donghyuk, & Lee, Eun Yeol. Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol.  Belgium.  doi:10.1016/j.ymben.2019.10.004.

Copy to clipboard


                    Nguyen, Anh Duc, Park, Joon Young, Hwang, In Yeub, Hamilton, Richard, Kalyuzhnaya, Marina G., Kim, Donghyuk, and Lee, Eun Yeol. Wed .  
        "Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol".  Belgium.  doi:10.1016/j.ymben.2019.10.004.

Copy to clipboard


                    
@article{osti_1571700,

  title        = {Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol},

  author       = {Nguyen, Anh Duc and Park, Joon Young and Hwang, In Yeub and Hamilton, Richard and Kalyuzhnaya, Marina G. and Kim, Donghyuk and Lee, Eun Yeol},

  abstractNote = {},

  doi          = {10.1016/j.ymben.2019.10.004},

  journal      = {Metabolic Engineering},

  number       = C,

  volume       = 57,

  place        = {Belgium},

  year         = {2020},

  month        = {1}

}

Copy to clipboard

Journal Article:

Free Publicly Available Full Text

Accepted Manuscript (Publisher)

Publisher's Version of Record
DOI: 10.1016/j.ymben.2019.10.004

Other availability

Search WorldCat to find libraries that may hold this journal

Citation Metrics:

Cited by: 6 works

Citation information provided by
Web of Science

Save / Share:

Export Metadata

Save to My Library

Similar Records in DOE PAGES and OSTI.GOV collections:

Core Metabolism Shifts during Growth on Methanol versus Methane in the Methanotroph Methylomicrobium buryatense 5GB1

Journal Article Fu, Yanfen ; He, Lian ; Reeve, Jennifer ; ... - mBio (Online)

ABSTRACT Methylomicrobium buryatense 5GB1 is an obligate methylotroph which grows on methane or methanol with similar growth rates. It has long been assumed that the core metabolic pathways must be similar on the two substrates, but recent studies of methane metabolism in this bacterium suggest that growth on methanol might have significant differences from growth on methane. In this study, both a targeted metabolomics approach and a ¹³ C tracer approach were taken to understand core carbon metabolism in M. buryatense 5GB1 during growth on methanol and to determine whether such differences occur. Our results suggest a systematic shift ofmore »« less
Cited by 4
DOI: 10.1128/mBio.00406-19
Muconic acid production from methane using rationally-engineered methanotrophic biocatalysts

Journal Article Henard, Calvin A. ; Akberdin, Ilya R. ; Kalyuzhnaya, Marina G. ; ... - Green Chemistry

Here, we demonstrate bioconversion of methane to muconic acid, a dicarboxylic acid that can be upgraded to an array of platform chemicals, by three gammaproteobacterial methanotrophs. All engineered methanotrophs expressing a heterologous dihydroxyshikimate dehydratase, protocatechuate decarboxylase, and catechol dioxygenase produced muconic acid from methane, with the highest titer (12.4 mg MA per L), yield (2.8 mg MA per g CH₄), and specific productivity (1.2 mg MA per g dcw, 48 hr) synthesized by Methylotuvimicrobium buryatense, Methylococcus capsulatus, and Methylotuvimicrobium alcaliphilium, respectively. Methylotuvimicrobium alcaliphilum genome-scale model-guided strain engineering predicted that disruption of the pyruvate dehydrogenase or shikimate dehydrogenase would significantly enhancemore »« less
DOI: 10.1039/C9GC03722E
Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album strain BG8

Journal Article Kits, K. Dimitri ; Kalyuzhnaya, Marina G. ; Klotz, Martin G ; ... - Genome Announcements

The complete genome sequence of Methylomicrobium album BG8, a methane-oxidizing gammaproteobacterium isolated from freshwater, is reported. Aside from conserved inventory for growth on single-carbon compounds, M. album BG8 encodes a range of inventory for additional carbon and nitrogen transformations, but no genes for growth on multi-carbon substrates or for N-fixation.
DOI: 10.1128/genomeA.00170-13
Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems

Journal Article Frindte, Katharina ; Kalyuzhnaya, Marina G. ; Bringel, Françoise ; ... - Genome Announcements

ABSTRACT The genomes of the aerobic methanotrophs “Methyloterricola oryzae” strain 73a^TandMethylomagnum ishizawaistrain 175 were sequenced. Both strains were isolated from rice plants.Methyloterricola oryzaestrain 73a^Trepresents the first isolate of rice paddy cluster I, and strain 175 is the second representative of the recently described genusMethylomagnum.
DOI: 10.1128/genomeA.00526-17

Full Text Available
Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Lake Washington Sediment

Journal Article Kalyuzhnaya, Marina G. ; Lamb, Andrew E. ; McTaggart, Tami L. ; ... - Genome Announcements

The genomes of Methylosarcina lacus LW14^T (=ATCC BAA-1047^T = JCM 13284^T), Methylobacter sp. strain 21/22, Methylobacter sp. strain 31/32, Methylomonas sp. strain LW13, Methylomonas sp. strain MK1, and Methylomonas sp. strain 11b were sequenced and are reported here. All the strains are obligately methanotrophic bacteria isolated from the sediment of Lake Washington.
DOI: 10.1128/genomea.00103-15

Full Text Available

Similar Records