Two-dimensional UV spectroscopy: a new insight into the structure and dynamics of biomolecules

Borrego-Varillas, R.; Nenov, A.; Ganzer, L.; Oriana, A.; Manzoni, C.; Tolomelli, A.; Rivalta, I.; Mukamel, S.; Garavelli, M.; Cerullo, G.

doi:10.1039/C9SC03871J

Title: Two-dimensional UV spectroscopy: a new insight into the structure and dynamics of biomolecules

Journal Article · 05 November 2019 · Chemical Science

DOI: https://doi.org/10.1039/C9SC03871J · OSTI ID:1570484

Borrego-Varillas, R. ^[1];

^[2]; Ganzer, L. ^[1]; Oriana, A. ^[1]; Manzoni, C. ^[1];

^[3];

^[2];

^[4];

^[2];

^[1]

IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, I-20133 Milano, Italy
Dipartimento di Chimica Industriale, Universitá degli Studi di Bologna, I-40136 Bologna, Italy
Dipartimento di Chimica, Universitá degli Studi di Bologna, I-40126 Bologna, Italy
Department of Chemistry, Department of Physics and Astronomy, University of California, Irvine, USA

Two-dimensional ultraviolet spectroscopy has the potential to deliver rich structural and dynamical information on biomolecules such as DNA and proteins.

View Journal Article

Cite

Export

Save

Research Organization:: Bologna University (Italy); Univ. of California, Irvine, CA (United States)

Sponsoring Organization:: European Research Council (ERC); National Science Foundation (NSF); USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division

Grant/Contract Number:: SC0019484

OSTI ID:: 1570484

Journal Information:: Chemical Science, Journal Name: Chemical Science Journal Issue: 43 Vol. 10; ISSN 2041-6520; ISSN CSHCBM

Publisher:: Royal Society of ChemistryCopyright Statement

Country of Publication:: United Kingdom

Language:: English

References (112)

Two-Dimensional Ultraviolet (2DUV) Spectroscopic Tools for Identifying Fibrillation Propensity of Protein Residue Sequences Jiang, Jun; Mukamel, Shaul Angewandte Chemie International Edition, Vol. 49, Issue 50 https://doi.org/10.1002/anie.201005093	journal	November 2010
Multiple Decay Mechanisms and 2D-UV Spectroscopic Fingerprints of Singlet Excited Solvated Adenine-Uracil Monophosphate Li, Quansong; Giussani, Angelo; Segarra-Martí, Javier Chemistry - A European Journal, Vol. 22, Issue 22 https://doi.org/10.1002/chem.201505086	journal	April 2016
Tracking Conformational Dynamics of Polypeptides by Nonlinear Electronic Spectroscopy of Aromatic Residues: A First-Principles Simulation Study Nenov, Artur; a. Beccara, Silvio; Rivalta, Ivan ChemPhysChem, Vol. 15, Issue 15 https://doi.org/10.1002/cphc.201402374	journal	August 2014
Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table : Molcas 8 Aquilante, Francesco; Autschbach, Jochen; Carlson, Rebecca K. Journal of Computational Chemistry, Vol. 37, Issue 5 https://doi.org/10.1002/jcc.24221	journal	November 2015
Ab initio simulations of two-dimensional electronic spectra: The SOS//QM/MM approach Rivalta, Ivan; Nenov, Artur; Cerullo, Giulio International Journal of Quantum Chemistry, Vol. 114, Issue 2 https://doi.org/10.1002/qua.24511	journal	July 2013
Spectroscopic fingerprints of DNA/RNA pyrimidine nucleobases in third-order nonlinear electronic spectra Giussani, Angelo; Segarra-Martí, Javier; Nenov, Artur Theoretical Chemistry Accounts, Vol. 135, Issue 5 https://doi.org/10.1007/s00214-016-1867-z	journal	April 2016
The highly excited-state manifold of guanine: calibration for nonlinear electronic spectroscopy simulations Segarra-Martí, Javier; Pepino, Ana J.; Nenov, Artur Theoretical Chemistry Accounts, Vol. 137, Issue 3 https://doi.org/10.1007/s00214-018-2225-0	journal	March 2018
COBRAMM 2.0 — A software interface for tailoring molecular electronic structure calculations and running nanoscale (QM/MM) simulations Weingart, Oliver; Nenov, Artur; Altoè, Piero Journal of Molecular Modeling, Vol. 24, Issue 9 https://doi.org/10.1007/s00894-018-3769-6	journal	September 2018
Ultrafast UV photon echo peak shift and fluorescence up conversion studies of non-polar solvation dynamics Oskouei, A. Ajdarzadeh; Bräm, O.; Cannizzo, A. Chemical Physics, Vol. 350, Issue 1-3 https://doi.org/10.1016/j.chemphys.2008.01.029	journal	June 2008
Ultraviolet transient absorption, transient grating and photon echo studies of aqueous tryptophan Ajdarzadeh, Ahmad; Consani, Cristina; Bräm, Olivier Chemical Physics, Vol. 422 https://doi.org/10.1016/j.chemphys.2013.01.036	journal	August 2013
Bidimensional electronic spectroscopy on indole in gas phase and in water from first principles Nenov, Artur; Rivalta, Ivan; Mukamel, Shaul Computational and Theoretical Chemistry, Vol. 1040-1041 https://doi.org/10.1016/j.comptc.2014.03.031	journal	July 2014
Two-dimensional spectroscopy using diffractive optics based phased-locked photon echoes Cowan, M. L.; Ogilvie, J. P.; Miller, R. J. D. Chemical Physics Letters, Vol. 386, Issue 1-3 https://doi.org/10.1016/j.cplett.2004.01.027	journal	March 2004
Quantum Mechanical Studies on the Photophysics and the Photochemistry of Nucleic Acids and Nucleobases Improta, Roberto; Santoro, Fabrizio; Blancafort, Lluís Chemical Reviews, Vol. 116, Issue 6 https://doi.org/10.1021/acs.chemrev.5b00444	journal	March 2016
Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy Ghosh, Ayanjeet; Ostrander, Joshua S.; Zanni, Martin T. Chemical Reviews, Vol. 117, Issue 16 https://doi.org/10.1021/acs.chemrev.6b00582	journal	January 2017
Systematic Expansion of Active Spaces beyond the CASSCF Limit: A GASSCF/SplitGAS Benchmark Study Vogiatzis, Konstantinos D.; Li Manni, Giovanni; Stoneburner, Samuel J. Journal of Chemical Theory and Computation, Vol. 11, Issue 7 https://doi.org/10.1021/acs.jctc.5b00191	journal	June 2015
Two-Dimensional Electronic Spectroscopy of Benzene, Phenol, and Their Dimer: An Efficient First-Principles Simulation Protocol Nenov, Artur; Mukamel, Shaul; Garavelli, Marco Journal of Chemical Theory and Computation, Vol. 11, Issue 8 https://doi.org/10.1021/acs.jctc.5b00443	journal	July 2015
Simulation of Multi-Dimensional Signals in the Optical Domain: Quantum-Classical Feedback in Nonlinear Exciton Propagation Richter, Martin; Fingerhut, Benjamin P. Journal of Chemical Theory and Computation, Vol. 12, Issue 7 https://doi.org/10.1021/acs.jctc.6b00371	journal	June 2016
Resolving the Singlet Excited State Manifold of Benzophenone by First-Principles Simulations and Ultrafast Spectroscopy Segarra-Martí, Javier; Zvereva, Elena; Marazzi, Marco Journal of Chemical Theory and Computation, Vol. 14, Issue 5 https://doi.org/10.1021/acs.jctc.7b01208	journal	March 2018
Center Line Slope Analysis in Two-Dimensional Electronic Spectroscopy Šanda, František; Perlík, Václav; Lincoln, Craig N. The Journal of Physical Chemistry A, Vol. 119, Issue 44 https://doi.org/10.1021/acs.jpca.5b08909	journal	October 2015
New Insights into the Photophysics of DNA Nucleobases Prokhorenko, Valentyn I.; Picchiotti, Alessandra; Pola, Martina The Journal of Physical Chemistry Letters, Vol. 7, Issue 22 https://doi.org/10.1021/acs.jpclett.6b02085	journal	October 2016
UV-Light-Induced Vibrational Coherences: The Key to Understand Kasha Rule Violation in trans -Azobenzene Nenov, Artur; Borrego-Varillas, Rocio; Oriana, Aurelio The Journal of Physical Chemistry Letters, Vol. 9, Issue 7 https://doi.org/10.1021/acs.jpclett.8b00152	journal	March 2018
Exciton Trapping Dynamics in DNA Multimers Borrego-Varillas, Rocio; Cerullo, Giulio; Markovitsi, Dimitra The Journal of Physical Chemistry Letters, Vol. 10, Issue 7 https://doi.org/10.1021/acs.jpclett.9b00450	journal	March 2019
Broad-Band Ultraviolet CD Spectroscopy of Ultrafast Peptide Backbone Conformational Dynamics Oppermann, Malte; Spekowius, Jasmin; Bauer, Benjamin The Journal of Physical Chemistry Letters, Vol. 10, Issue 11 https://doi.org/10.1021/acs.jpclett.9b01253	journal	May 2019
Pyrene, a Test Case for Deep-Ultraviolet Molecular Photophysics Picchiotti, Alessandra; Nenov, Artur; Giussani, Angelo The Journal of Physical Chemistry Letters, Vol. 10, Issue 12 https://doi.org/10.1021/acs.jpclett.9b01325	journal	May 2019
Two-Dimensional Electronic Spectroscopy of Molecular Excitons Milota, Franz; Sperling, Jaroslaw; Nemeth, Alexandra Accounts of Chemical Research, Vol. 42, Issue 9 https://doi.org/10.1021/ar800282e	journal	September 2009
Fluorescence decay kinetics of the tryptophyl residues of myoglobin: effect of heme ligation and evidence for discrete lifetime components Willis, K. J.; Szabo, A. G.; Zuker, M. Biochemistry, Vol. 29, Issue 22 https://doi.org/10.1021/bi00474a008	journal	June 1990
Ultrafast Excited-State Dynamics in Nucleic Acids Crespo-Hernández, Carlos E.; Cohen, Boiko; Hare, Patrick M. Chemical Reviews, Vol. 104, Issue 4 https://doi.org/10.1021/cr0206770	journal	April 2004
Coherent Two-Dimensional Optical Spectroscopy Cho, Minhaeng Chemical Reviews, Vol. 108, Issue 4 https://doi.org/10.1021/cr078377b	journal	April 2008
Coherent Multidimensional Optical Spectroscopy of Excitons in Molecular Aggregates; Quasiparticle versus Supermolecule Perspectives Abramavicius, Darius; Palmieri, Benoit; Voronine, Dmitri V. Chemical Reviews, Vol. 109, Issue 6 https://doi.org/10.1021/cr800268n	journal	June 2009
The restricted active space self-consistent-field method, implemented with a split graph unitary group approach Malmqvist, Per Aake.; Rendell, Alistair.; Roos, Bjoern O. The Journal of Physical Chemistry, Vol. 94, Issue 14 https://doi.org/10.1021/j100377a011	journal	July 1990
Second-order perturbation theory with a CASSCF reference function Andersson, Kerstin.; Malmqvist, Per Aake.; Roos, Bjoern O. The Journal of Physical Chemistry, Vol. 94, Issue 14 https://doi.org/10.1021/j100377a012	journal	July 1990
Ultrafast Internal Conversion of Electronically Excited RNA and DNA Nucleosides in Water Pecourt, Jean-Marc L.; Peon, Jorge; Kohler, Bern Journal of the American Chemical Society, Vol. 122, Issue 38 https://doi.org/10.1021/ja0021520	journal	September 2000
DNA Excited-State Dynamics: Ultrafast Internal Conversion and Vibrational Cooling in a Series of Nucleosides Pecourt, Jean-Marc L.; Peon, Jorge; Kohler, Bern Journal of the American Chemical Society, Vol. 123, Issue 42 https://doi.org/10.1021/ja0161453	journal	October 2001
Collective Behavior of Franck−Condon Excited States and Energy Transfer in DNA Double Helices Markovitsi, Dimitra; Onidas, Delphine; Gustavsson, Thomas Journal of the American Chemical Society, Vol. 127, Issue 49 https://doi.org/10.1021/ja054955z	journal	December 2005
Simulation Study of Chiral Two-Dimensional Ultraviolet Spectroscopy of the Protein Backbone Abramavicius, Darius; Jiang, Jun; Bulheller, Benjamin M. Journal of the American Chemical Society, Vol. 132, Issue 22 https://doi.org/10.1021/ja101968g	journal	June 2010
Tracking Fiber Formation in Human Islet Amyloid Polypeptide with Automated 2D-IR Spectroscopy Strasfeld, David B.; Ling, Yun L.; Shim, Sang-Hee Journal of the American Chemical Society, Vol. 130, Issue 21 https://doi.org/10.1021/ja801483n	journal	May 2008
Triplet Separation Drives Singlet Fission after Femtosecond Correlated Triplet Pair Production in Rubrene Breen, Ilana; Tempelaar, Roel; Bizimana, Laurie A. Journal of the American Chemical Society, Vol. 139, Issue 34 https://doi.org/10.1021/jacs.7b02621	journal	August 2017
Observation of the Sub-100 Femtosecond Population of a Dark State in a Thiobase Mediating Intersystem Crossing Borrego-Varillas, Rocío; Teles-Ferreira, Danielle C.; Nenov, Artur Journal of the American Chemical Society, Vol. 140, Issue 47 https://doi.org/10.1021/jacs.8b07057	journal	October 2018
Fluorescence Properties of DNA Nucleosides and Nucleotides: A Refined Steady-State and Femtosecond Investigation Onidas, D.; Markovitsi, D.; Marguet, S. The Journal of Physical Chemistry B, Vol. 106, Issue 43 https://doi.org/10.1021/jp026063g	journal	October 2002
Simulation of Two-Dimensional Ultraviolet Spectroscopy of Amyloid Fibrils Jiang, Jun; Abramavicius, Darius; Falvo, Cyril The Journal of Physical Chemistry B, Vol. 114, Issue 37 https://doi.org/10.1021/jp1046968	journal	September 2010
Probing Amyloid Fibril Growth by Two-Dimensional Near-Ultraviolet Spectroscopy Jiang, Jun; Mukamel, Shaul The Journal of Physical Chemistry B, Vol. 115, Issue 19 https://doi.org/10.1021/jp201164u	journal	May 2011
Probing Ultrafast Dynamics in Adenine With Mid-UV Four-Wave Mixing Spectroscopies West, Brantley A.; Womick, Jordan M.; Moran, Andrew M. The Journal of Physical Chemistry A, Vol. 115, Issue 31 https://doi.org/10.1021/jp204416m	journal	August 2011
Two-Dimensional Fourier Transform Spectroscopy of Adenine and Uracil Using Shaped Ultrafast Laser Pulses in the Deep UV Tseng, Chien-hung; Sándor, Péter; Kotur, Marija The Journal of Physical Chemistry A, Vol. 116, Issue 11 https://doi.org/10.1021/jp207228b	journal	December 2011
Modelling Time-Resolved Two-Dimensional Electronic Spectroscopy of the Primary Photoisomerization Event in Rhodopsin Rivalta, Ivan; Nenov, Artur; Weingart, Oliver The Journal of Physical Chemistry B, Vol. 118, Issue 28 https://doi.org/10.1021/jp502538m	journal	May 2014
Structure of the Amide I Band of Peptides Measured by Femtosecond Nonlinear-Infrared Spectroscopy Hamm, Peter; Lim, Manho; Hochstrasser, Robin M. The Journal of Physical Chemistry B, Vol. 102, Issue 31 https://doi.org/10.1021/jp9813286	journal	July 1998
Nonradiative Decay Mechanisms in DNA Model Systems Kohler, Bern The Journal of Physical Chemistry Letters, Vol. 1, Issue 13 https://doi.org/10.1021/jz100491x	journal	June 2010
Two-Dimensional Electronic Spectroscopy in the Ultraviolet Wavelength Range West, Brantley A.; Moran, Andrew M. The Journal of Physical Chemistry Letters, Vol. 3, Issue 18 https://doi.org/10.1021/jz301048n	journal	August 2012
Signatures of the Protein Folding Pathway in Two-Dimensional Ultraviolet Spectroscopy Jiang, Jun; Lai, Zaizhi; Wang, Jin The Journal of Physical Chemistry Letters, Vol. 5, Issue 8 https://doi.org/10.1021/jz5002264	journal	March 2014
Disentangling Peptide Configurations via Two-Dimensional Electronic Spectroscopy: Ab Initio Simulations Beyond the Frenkel Exciton Hamiltonian Nenov, Artur; Rivalta, Ivan; Cerullo, Giulio The Journal of Physical Chemistry Letters, Vol. 5, Issue 4 https://doi.org/10.1021/jz5002314	journal	January 2014
Protein folding and misfolding Dobson, Christopher M. Nature, Vol. 426, Issue 6968 https://doi.org/10.1038/nature02261	journal	December 2003
Two-dimensional spectroscopy of electronic couplings in photosynthesis Brixner, Tobias; Stenger, Jens; Vaswani, Harsha M. Nature, Vol. 434, Issue 7033 https://doi.org/10.1038/nature03429	journal	March 2005
Base stacking controls excited-state dynamics in A·T DNA Crespo-Hernández, Carlos E.; Cohen, Boiko; Kohler, Bern Nature, Vol. 436, Issue 7054 https://doi.org/10.1038/nature03933	journal	August 2005
Watching hydrogen-bond dynamics in a β-turn by transient two-dimensional infrared spectroscopy Kolano, Christoph; Helbing, Jan; Kozinski, Mariusz Nature, Vol. 444, Issue 7118 https://doi.org/10.1038/nature05352	journal	November 2006
Coherent measurements of high-order electronic correlations in quantum wells Turner, Daniel B.; Nelson, Keith A. Nature, Vol. 466, Issue 7310 https://doi.org/10.1038/nature09286	journal	August 2010
Four-wave mixing experiments with extreme ultraviolet transient gratings Bencivenga, F.; Cucini, R.; Capotondi, F. Nature, Vol. 520, Issue 7546 https://doi.org/10.1038/nature14341	journal	April 2015
Identification and characterization of diverse coherences in the Fenna–Matthews–Olson complex Thyrhaug, Erling; Tempelaar, Roel; Alcocer, Marcelo J. P. Nature Chemistry, Vol. 10, Issue 7 https://doi.org/10.1038/s41557-018-0060-5	journal	May 2018
How to turn your pump–probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopiesvia pulse shaping Shim, Sang-Hee; Zanni, Martin T. Phys. Chem. Chem. Phys., Vol. 11, Issue 5 https://doi.org/10.1039/B813817F	journal	January 2009
Two-dimensional near-ultraviolet spectroscopy of aromatic residues in amyloid fibrils: a first principles study Jiang, Jun; Mukamel, Shaul Phys. Chem. Chem. Phys., Vol. 13, Issue 6 https://doi.org/10.1039/C0CP02047H	journal	January 2011
Probing deactivation pathways of DNA nucleobases by two-dimensional electronic spectroscopy: first principles simulations Nenov, Artur; Segarra-Martí, Javier; Giussani, Angelo Faraday Discussions, Vol. 177 https://doi.org/10.1039/C4FD00175C	journal	January 2015
Spectral lineshapes in nonlinear electronic spectroscopy Nenov, Artur; Giussani, Angelo; Fingerhut, Benjamin P. Physical Chemistry Chemical Physics, Vol. 17, Issue 46 https://doi.org/10.1039/C5CP01167A	journal	January 2015
Two-dimensional electronic spectroscopy as a tool for tracking molecular conformations in DNA/RNA aggregates Segarra-Martí, Javier; Jaiswal, Vishal K.; Pepino, Ana Julieta Faraday Discussions, Vol. 207 https://doi.org/10.1039/C7FD00201G	journal	January 2018
The origin of absorptive features in the two-dimensional electronic spectra of rhodopsin Farag, Marwa H.; Jansen, Thomas L. C.; Knoester, Jasper Physical Chemistry Chemical Physics, Vol. 20, Issue 18 https://doi.org/10.1039/C8CP00638E	journal	January 2018
Ultrafast UV spectroscopy: from a local to a global view of dynamical processes in macromolecules Cannizzo, Andrea Physical Chemistry Chemical Physics, Vol. 14, Issue 32 https://doi.org/10.1039/c2cp40567a	journal	January 2012
Modeling multidimensional spectral lineshapes from first principles: application to water-solvated adenine Segarra-Martí, Javier; Segatta, Francesco; Mackenzie, Tristan A. Faraday Discussions https://doi.org/10.1039/c9fd00072k	journal	January 2020
Two-dimensional Fourier transform electronic spectroscopy Hybl, John D.; Albrecht Ferro, Allison; Jonas, David M. The Journal of Chemical Physics, Vol. 115, Issue 14, p. 6606-6622 https://doi.org/10.1063/1.1398579	journal	October 2001
Unbiased auxiliary basis sets for accurate two-electron integral approximations Aquilante, Francesco; Lindh, Roland; Bondo Pedersen, Thomas The Journal of Chemical Physics, Vol. 127, Issue 11 https://doi.org/10.1063/1.2777146	journal	September 2007
Three pulse UV photon echo studies of molecules in solution: Effect of the chirp Oskouei, A. Ajdarzadeh; Tortschanoff, A.; Bräm, O. The Journal of Chemical Physics, Vol. 133, Issue 6 https://doi.org/10.1063/1.3463448	journal	August 2010
Influence of temperature on thymine-to-solvent vibrational energy transfer West, Brantley A.; Womick, Jordan M.; Moran, Andrew M. The Journal of Chemical Physics, Vol. 135, Issue 11 https://doi.org/10.1063/1.3628451	journal	September 2011
Molecular dynamics with electronic transitions Tully, John C. The Journal of Chemical Physics, Vol. 93, Issue 2 https://doi.org/10.1063/1.459170	journal	July 1990
Two-dimensional electronic spectroscopy with birefringent wedges Réhault, Julien; Maiuri, Margherita; Oriana, Aurelio Review of Scientific Instruments, Vol. 85, Issue 12 https://doi.org/10.1063/1.4902938	journal	December 2014
Modeling the high-energy electronic state manifold of adenine: Calibration for nonlinear electronic spectroscopy Nenov, Artur; Giussani, Angelo; Segarra-Martí, Javier The Journal of Chemical Physics, Vol. 142, Issue 21 https://doi.org/10.1063/1.4921016	journal	June 2015
Ultrafast molecular photophysics in the deep-ultraviolet Chergui, Majed The Journal of Chemical Physics, Vol. 150, Issue 7 https://doi.org/10.1063/1.5082644	journal	February 2019
Tautomeric selectivity of the excited-state lifetime of guanine/cytosine base pairs: The role of electron-driven proton-transfer processes Sobolewski, A. L.; Domcke, W.; Hattig, C. Proceedings of the National Academy of Sciences, Vol. 102, Issue 50 https://doi.org/10.1073/pnas.0504087102	journal	December 2005
Electronic energy delocalization and dissipation in single- and double-stranded DNA Buchvarov, I.; Wang, Q.; Raytchev, M. Proceedings of the National Academy of Sciences, Vol. 104, Issue 12 https://doi.org/10.1073/pnas.0606757104	journal	March 2007
Internal conversion to the electronic ground state occurs via two distinct pathways for pyrimidine bases in aqueous solution Hare, P. M.; Crespo-Hernandez, C. E.; Kohler, B. Proceedings of the National Academy of Sciences, Vol. 104, Issue 2 https://doi.org/10.1073/pnas.0608055104	journal	December 2006
Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide Shim, S.-H.; Strasfeld, D. B.; Ling, Y. L. Proceedings of the National Academy of Sciences, Vol. 104, Issue 36, p. 14197-14202 https://doi.org/10.1073/pnas.0700804104	journal	May 2007
Two-dimensional spectroscopy at infrared and optical frequencies Hochstrasser, R. M. Proceedings of the National Academy of Sciences, Vol. 104, Issue 36 https://doi.org/10.1073/pnas.0704079104	journal	July 2007
UV excitation of single DNA and RNA strands produces high yields of exciplex states between two stacked bases Takaya, T.; Su, C.; de La Harpe, K. Proceedings of the National Academy of Sciences, Vol. 105, Issue 30 https://doi.org/10.1073/pnas.0802079105	journal	July 2008
Two-dimensional infrared spectra of isotopically diluted amyloid fibrils from A 40 Kim, Y. S.; Liu, L.; Axelsen, P. H. Proceedings of the National Academy of Sciences, Vol. 105, Issue 22 https://doi.org/10.1073/pnas.0802993105	journal	May 2008
Picosecond fluorescence decay of tryptophans in myoglobin. Hochstrasser, R. M.; Negus, D. K. Proceedings of the National Academy of Sciences, Vol. 81, Issue 14 https://doi.org/10.1073/pnas.81.14.4399	journal	July 1984
Two-dimensional Fourier transform spectroscopy in the ultraviolet with sub-20 fs pump pulses and 250–720 nm supercontinuum probe Krebs, N.; Pugliesi, I.; Hauer, J. New Journal of Physics, Vol. 15, Issue 8 https://doi.org/10.1088/1367-2630/15/8/085016	journal	August 2013
Double-quantum-coherence attosecond x-ray spectroscopy of spatially separated, spectrally overlapping core-electron transitions Schweigert, Igor V.; Mukamel, Shaul Physical Review A, Vol. 78, Issue 5 https://doi.org/10.1103/PhysRevA.78.052509	journal	November 2008
Coherent Ultrafast Core-Hole Correlation Spectroscopy: X-Ray Analogues of Multidimensional NMR Schweigert, Igor V.; Mukamel, Shaul Physical Review Letters, Vol. 99, Issue 16 https://doi.org/10.1103/PhysRevLett.99.163001	journal	October 2007
UV-induced DNA Damage: The Role of Electronic Excited States Markovitsi, Dimitra Photochemistry and Photobiology, Vol. 92, Issue 1 https://doi.org/10.1111/php.12533	journal	December 2015
On the Simulation of Two-dimensional Electronic Spectroscopy of Indole-containing Peptides Giussani, Angelo; Marcheselli, Jacopo; Mukamel, Shaul Photochemistry and Photobiology, Vol. 93, Issue 6 https://doi.org/10.1111/php.12770	journal	July 2017
Multidimensional spectroscopy with attosecond extreme ultraviolet and shaped near-infrared pulses Marroux, Hugo J. B.; Fidler, Ashley P.; Neumark, Daniel M. Science Advances, Vol. 4, Issue 9 https://doi.org/10.1126/sciadv.aau3783	journal	September 2018
Two-Quantum 2D FT Electronic Spectroscopy of Biexcitons in GaAs Quantum Wells Stone, K. W.; Gundogdu, K.; Turner, D. B. Science, Vol. 324, Issue 5931 https://doi.org/10.1126/science.1170274	journal	May 2009
Ultrafast Tryptophan-to-Heme Electron Transfer in Myoglobins Revealed by UV 2D Spectroscopy Consani, C.; Aubock, G.; van Mourik, F. Science, Vol. 339, Issue 6127 https://doi.org/10.1126/science.1230758	journal	February 2013
Early Events of DNA Photodamage Schreier, Wolfgang J.; Gilch, Peter; Zinth, Wolfgang Annual Review of Physical Chemistry, Vol. 66, Issue 1 https://doi.org/10.1146/annurev-physchem-040214-121821	journal	April 2015
Semiclassical Path Integral Dynamics: Photosynthetic Energy Transfer with Realistic Environment Interactions Lee, Mi Kyung; Huo, Pengfei; Coker, David F. Annual Review of Physical Chemistry, Vol. 67, Issue 1 https://doi.org/10.1146/annurev-physchem-040215-112252	journal	May 2016
Protein Misfolding, Functional Amyloid, and Human Disease Chiti, Fabrizio; Dobson, Christopher M. Annual Review of Biochemistry, Vol. 75, Issue 1 https://doi.org/10.1146/annurev.biochem.75.101304.123901	journal	June 2006
M ULTIDIMENSIONAL F EMTOSECOND C ORRELATION S PECTROSCOPIES OF E LECTRONIC AND V IBRATIONAL E XCITATIONS Mukamel, Shaul Annual Review of Physical Chemistry, Vol. 51, Issue 1 https://doi.org/10.1146/annurev.physchem.51.1.691	journal	October 2000
T WO -D IMENSIONAL F EMTOSECOND S PECTROSCOPY Jonas, David M. Annual Review of Physical Chemistry, Vol. 54, Issue 1 https://doi.org/10.1146/annurev.physchem.54.011002.103907	journal	October 2003
DNA Excited-State Dynamics: From Single Bases to the Double Helix Middleton, Chris T.; de La Harpe, Kimberly; Su, Charlene Annual Review of Physical Chemistry, Vol. 60, Issue 1 https://doi.org/10.1146/annurev.physchem.59.032607.093719	journal	May 2009
Linear techniques of phase measurement by femtosecond spectral interferometry for applications in spectroscopy Lepetit, L.; Chériaux, G.; Joffre, M. Journal of the Optical Society of America B, Vol. 12, Issue 12, p. 2467-2474 https://doi.org/10.1364/JOSAB.12.002467	journal	January 1995
Compact implementation of Fourier transform two-dimensional IR spectroscopy without phase ambiguity Helbing, Jan; Hamm, Peter Journal of the Optical Society of America B, Vol. 28, Issue 1 https://doi.org/10.1364/JOSAB.28.000171	journal	December 2010
Facile collection of two-dimensional electronic spectra using femtosecond pulse-shaping Technology Grumstrup, Erik M.; Shim, Sang-Hee; Montgomery, Matthew A. Optics Express, Vol. 15, Issue 25 https://doi.org/10.1364/OE.15.016681	journal	January 2007
Two-color two-dimensional Fourier transform electronic spectroscopy with a pulse-shaper Myers, Jeffrey A.; Lewis, Kristin L.; Tekavec, Patrick F. Optics Express, Vol. 16, Issue 22 https://doi.org/10.1364/OE.16.017420	journal	January 2008
Two-Dimensional Ultrafast Fourier Transform Spectroscopy in the Deep Ultraviolet Tseng, Chien-hung; Matsika, Spiridoula; Weinacht, Thomas C. Optics Express, Vol. 17, Issue 21 https://doi.org/10.1364/OE.17.018788	journal	January 2009
Two-dimensional electronic spectroscopy in the ultraviolet by a birefringent delay line Borrego-Varillas, Rocio; Oriana, Aurelio; Ganzer, Lucia Optics Express, Vol. 24, Issue 25 https://doi.org/10.1364/OE.24.028491	journal	January 2016
Tunable two-dimensional femtosecond spectroscopy Brixner, T.; Stiopkin, I. V.; Fleming, G. R. Optics Letters, Vol. 29, Issue 8 https://doi.org/10.1364/OL.29.000884	journal	January 2004
Two-dimensional Fourier transform spectroscopy in the pump-probe geometry DeFlores, Lauren P.; Nicodemus, Rebecca A.; Tokmakoff, Andrei Optics Letters, Vol. 32, Issue 20 https://doi.org/10.1364/OL.32.002966	journal	January 2007
Inherently phase-stable coherent two-dimensional spectroscopy using only conventional optics Selig, Ulrike; Langhojer, Florian; Dimler, Frank Optics Letters, Vol. 33, Issue 23 https://doi.org/10.1364/OL.33.002851	journal	January 2008
Compact phase-stable design for single- and double-quantum two-dimensional electronic spectroscopy Nemeth, Alexandra; Sperling, Jaroslaw; Hauer, Jürgen Optics Letters, Vol. 34, Issue 21 https://doi.org/10.1364/OL.34.003301	journal	January 2009
Coherent two-dimensional ultraviolet spectroscopy in fully noncollinear geometry Selig, Ulrike; Schleussner, Carl-Friedrich; Foerster, Michael Optics Letters, Vol. 35, Issue 24 https://doi.org/10.1364/OL.35.004178	journal	January 2010
Ultrabroadband femtosecond two-dimensional ultraviolet transient absorption Auböck, Gerald; Consani, Cristina; van Mourik, Frank Optics Letters, Vol. 37, Issue 12 https://doi.org/10.1364/OL.37.002337	journal	January 2012
Phase-locked pulses for two-dimensional spectroscopy by a birefringent delay line Brida, Daniele; Manzoni, Cristian; Cerullo, Giulio Optics Letters, Vol. 37, Issue 15 https://doi.org/10.1364/OL.37.003027	journal	January 2012
Towards X-ray transient grating spectroscopy Svetina, C.; Mankowsky, R.; Knopp, G. Optics Letters, Vol. 44, Issue 3 https://doi.org/10.1364/OL.44.000574	journal	January 2019
Optical two-dimensional Fourier transform spectroscopy with active interferometric stabilization Zhang, Tianhao; Borca, Camelia N.; Li, Xiaoqin Optics Express, Vol. 13, Issue 19 https://doi.org/10.1364/OPEX.13.007432	journal	January 2005
Ultrafast broadband circular dichroism in the deep ultraviolet Oppermann, Malte; Bauer, Benjamin; Rossi, Thomas Optica, Vol. 6, Issue 1 https://doi.org/10.1364/OPTICA.6.000056	journal	January 2019
Time-Resolved Visible and Infrared Study of the Cyano Complexes of Myoglobin and of Hemoglobin I from Lucina pectinata Helbing, Jan; Bonacina, Luigi; Pietri, Ruth Biophysical Journal, Vol. 87, Issue 3 https://doi.org/10.1529/biophysj.103.036236	journal	September 2004
Ultraviolet Transient Absorption Spectrometer with Sub-20-fs Time Resolution Borrego-Varillas, Rocío; Ganzer, Lucia; Cerullo, Giulio Applied Sciences, Vol. 8, Issue 6 https://doi.org/10.3390/app8060989	journal	June 2018

Similar Records

Protein Dynamics by Two-Dimensional Infrared Spectroscopy

Journal Article · 2021 · Annual Review of Analytical Chemistry · OSTI ID:1852738

Tumbic, Goran W.; Hossan, Md Yeathad; Thielges, Megan C.

Understanding interactions between biomolecules and two-dimensional nanomaterials using in silico microscopes

Journal Article · 2022 · Advanced Drug Delivery Reviews · OSTI ID:1871101

Chen, Serena H.; Bell, David R.; Luan, Binquan

Role of methyl groups in dynamics and evolution of biomolecules

Journal Article · 2011 · Journal of Biological Physics · OSTI ID:1096331

Nickels, Jonathan D; Curtis, J. E.; Oneill, Hugh; +1 more

Related Subjects

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Title: Two-dimensional UV spectroscopy: a new insight into the structure and dynamics of biomolecules

Citation Formats

References (112)

Similar Records

Related Subjects