Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors
Abstract
Background and aims: Forest tree microbiomes are vital to forest dynamics, diversity, and ecosystem processes. Mature limber pines (Pinus flexilis) host a core microbiome of acetic acid bacteria in their foliage, but the bacterial endophyte community structure, variation, and assembly across tree ontogeny is unknown. The aims of this research were to test if the core microbiome observed in adult P. flexilis is established at the seedling stage, if seedlings host different endophyte communities in root and shoot tissues, and how environmental factors structure seedling endophyte communities. Methods: The 16S rRNA gene was sequenced to characterize the bacterial endophyte communities in roots and shoots of P. flexilis seedlings grown in plots at three elevations at Niwot Ridge, Colorado, subjected to experimental treatments (watering and heating). The data was compared to previously sequenced endophyte communities from adult tree foliage sampled in the same year and location. Results: Seedling shoots hosted a different core microbiome than adult tree foliage and were dominated by a few OTUs in the family Oxalobacteraceae, identical or closely related to strains with antifungal activity. Shoot and root communities significantly differed from each other but shared major OTUs. Watering but not warming restructured the seedling endophyte communities. Conclusions:more »
- Authors:
-
- Univ. of California Merced, CA (United States)
- Univ. of California Merced, CA (United States); Univ. of Tennessee, Knoxville, TN (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Univ. of California Merced, CA (United States); Univ. of California, Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF); National Institutes of Health (NIH)
- OSTI Identifier:
- 1567127
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Plant and Soil
- Additional Journal Information:
- Journal Volume: 428; Journal Issue: 1-2; Journal ID: ISSN 0032-079X
- Publisher:
- Springer
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 16S rRNA; Endophytic bacteria; Pinus flexilis; Climate change; Conifers
Citation Formats
Carper, Dana L., Carrell, Alyssa A., Kueppers, Lara M., and Frank, A. Carolin. Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors. United States: N. p., 2018.
Web. doi:10.1007/s11104-018-3682-x.
Carper, Dana L., Carrell, Alyssa A., Kueppers, Lara M., & Frank, A. Carolin. Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors. United States. https://doi.org/10.1007/s11104-018-3682-x
Carper, Dana L., Carrell, Alyssa A., Kueppers, Lara M., and Frank, A. Carolin. Wed .
"Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors". United States. https://doi.org/10.1007/s11104-018-3682-x. https://www.osti.gov/servlets/purl/1567127.
@article{osti_1567127,
title = {Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors},
author = {Carper, Dana L. and Carrell, Alyssa A. and Kueppers, Lara M. and Frank, A. Carolin},
abstractNote = {Background and aims: Forest tree microbiomes are vital to forest dynamics, diversity, and ecosystem processes. Mature limber pines (Pinus flexilis) host a core microbiome of acetic acid bacteria in their foliage, but the bacterial endophyte community structure, variation, and assembly across tree ontogeny is unknown. The aims of this research were to test if the core microbiome observed in adult P. flexilis is established at the seedling stage, if seedlings host different endophyte communities in root and shoot tissues, and how environmental factors structure seedling endophyte communities. Methods: The 16S rRNA gene was sequenced to characterize the bacterial endophyte communities in roots and shoots of P. flexilis seedlings grown in plots at three elevations at Niwot Ridge, Colorado, subjected to experimental treatments (watering and heating). The data was compared to previously sequenced endophyte communities from adult tree foliage sampled in the same year and location. Results: Seedling shoots hosted a different core microbiome than adult tree foliage and were dominated by a few OTUs in the family Oxalobacteraceae, identical or closely related to strains with antifungal activity. Shoot and root communities significantly differed from each other but shared major OTUs. Watering but not warming restructured the seedling endophyte communities. Conclusions: The results indicate differences in assembly and ecological function across conifer life stages. Seedlings may recruit endophytes to protect against fungi under increased soil moisture.},
doi = {10.1007/s11104-018-3682-x},
journal = {Plant and Soil},
number = 1-2,
volume = 428,
place = {United States},
year = {2018},
month = {5}
}
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Figures / Tables:
Figure 1: Principal coordinate analysis showing differentiation between tissue age, shoot and root communities. (a) unweighted and (b) weighted UniFrac distance matrix. Points that are closer together have more similar communities. Each point corresponds to a sample with the tissue type of each sample indicated by color (blue = shoots/needles,more »
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- Mina, Diogo; Pereira, José Alberto; Lino-Neto, Teresa
- Microbial Ecology, Vol. 80, Issue 1
Assembly of root-associated microbial community of typical rice cultivars in different soil types
journal, December 2019
- Xu, Yan; Ge, Yi; Song, Jianxiao
- Biology and Fertility of Soils, Vol. 56, Issue 2
Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.