Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence
Abstract
It has been rarely questioned as to whether the enrichment of specific bacterial taxa found in the rhizosphere of a given plant species changes with different soil types under field conditions and under similar climatic conditions. Understanding tree microbiome interactions is essential because, in contrast to annual plants, tree species require decades to grow and strongly depend on the nutritive resources of the soil. In this context, we tested using a natural toposequence the hypothesis that beech trees select specific taxa and functions in their rhizosphere based on the soil conditions and their nutritive requirements. Our 16S rRNA gene pyrosequencing analyses revealed that the soil type determines the taxa colonizing the beech rhizosphere. A rhizosphere effect was observed in each soil type, but a stronger effect was observed in the nutrient-poor soils. Although the communities varied significantly across the toposequence, we identified a core beech rhizosphere microbiome. Functionally, GeoChip analyses showed a functional redundancy across the toposequence, with genes related to nutrient cycling and to the bacterial immune system being significantly enriched in the rhizosphere. Altogether, the data suggest that, regardless of the soil conditions, trees enrich variable bacterial communities to maintain the functions necessary for their nutrition.
- Authors:
-
[1];
[2];
- Univ. de Lorraine, Champenoux (France)
- Univ. of Oklahoma, Norman, OK (United States)
- Univ. of Oklahoma, Norman, OK (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth Sciences Division; Tsinghua Univ., Beijing (China)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1567096
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Scientific Reports
- Additional Journal Information:
- Journal Volume: 7; Journal Issue: 1; Journal ID: ISSN 2045-2322
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Colin, Y., Nicolitch, O., Van Nostrand, J. D., Zhou, J. Z., Turpault, M. -P., and Uroz, S. Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence. United States: N. p., 2017.
Web. doi:10.1038/s41598-017-07639-1.
Colin, Y., Nicolitch, O., Van Nostrand, J. D., Zhou, J. Z., Turpault, M. -P., & Uroz, S. Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence. United States. https://doi.org/10.1038/s41598-017-07639-1
Colin, Y., Nicolitch, O., Van Nostrand, J. D., Zhou, J. Z., Turpault, M. -P., and Uroz, S. Tue .
"Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence". United States. https://doi.org/10.1038/s41598-017-07639-1. https://www.osti.gov/servlets/purl/1567096.
@article{osti_1567096,
title = {Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence},
author = {Colin, Y. and Nicolitch, O. and Van Nostrand, J. D. and Zhou, J. Z. and Turpault, M. -P. and Uroz, S.},
abstractNote = {It has been rarely questioned as to whether the enrichment of specific bacterial taxa found in the rhizosphere of a given plant species changes with different soil types under field conditions and under similar climatic conditions. Understanding tree microbiome interactions is essential because, in contrast to annual plants, tree species require decades to grow and strongly depend on the nutritive resources of the soil. In this context, we tested using a natural toposequence the hypothesis that beech trees select specific taxa and functions in their rhizosphere based on the soil conditions and their nutritive requirements. Our 16S rRNA gene pyrosequencing analyses revealed that the soil type determines the taxa colonizing the beech rhizosphere. A rhizosphere effect was observed in each soil type, but a stronger effect was observed in the nutrient-poor soils. Although the communities varied significantly across the toposequence, we identified a core beech rhizosphere microbiome. Functionally, GeoChip analyses showed a functional redundancy across the toposequence, with genes related to nutrient cycling and to the bacterial immune system being significantly enriched in the rhizosphere. Altogether, the data suggest that, regardless of the soil conditions, trees enrich variable bacterial communities to maintain the functions necessary for their nutrition.},
doi = {10.1038/s41598-017-07639-1},
journal = {Scientific Reports},
number = 1,
volume = 7,
place = {United States},
year = {2017},
month = {8}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 22 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
The ecological engineering impact of a single tree species on the soil microbial community: Tree impacts on the soil microbial community
journal, January 2010
- Mitchell, Ruth J.; Campbell, Colin D.; Chapman, Stephen J.
- Journal of Ecology, Vol. 98, Issue 1
A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
journal, June 2012
- Huse, Susan M.; Ye, Yuzhen; Zhou, Yanjiao
- PLoS ONE, Vol. 7, Issue 6
Effects of soil water content, fertilization, light, weed competition and seedbed type on natural regeneration of beech (Fagus sylvatica)
journal, April 1995
- Madsen, Palle
- Forest Ecology and Management, Vol. 72, Issue 2-3
Plant-Growth-Promoting Rhizobacteria
journal, October 2009
- Lugtenberg, Ben; Kamilova, Faina
- Annual Review of Microbiology, Vol. 63, Issue 1
Structure and function of bacterial communities in ageing soils: Insights from the Mendocino ecological staircase
journal, February 2014
- Uroz, S.; Tech, J. J.; Sawaya, N. A.
- Soil Biology and Biochemistry, Vol. 69
DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes
journal, April 2015
- Plagens, André; Richter, Hagen; Charpentier, Emmanuelle
- FEMS Microbiology Reviews, Vol. 39, Issue 3
The Structure, Distribution, and Biomass of the World's Forests
journal, November 2013
- Pan, Yude; Birdsey, Richard A.; Phillips, Oliver L.
- Annual Review of Ecology, Evolution, and Systematics, Vol. 44, Issue 1
Microbial activities related to C and N cycling and microbial community structure in the rhizospheres of Pinus sylvestris, Picea abies and Betula pendula seedlings in an organic and mineral soil
journal, October 1999
- Priha, Outi; Grayston, Susan J.; Pennanen, Taina
- FEMS Microbiology Ecology, Vol. 30, Issue 2
Functional Diversity of Culturable Bacterial Communities in the Rhizosphere in Relation to Fine-root and Soil Parameters in Alder Stands on Forest, Abandoned Agricultural, and Oil-shale Mining Areas
journal, May 2006
- Lõhmus, K.; Truu, M.; Truu, J.
- Plant and Soil, Vol. 283, Issue 1-2
Influence of Forest Trees on the Distribution of Mineral Weathering-Associated Bacterial Communities of the Scleroderma citrinum Mycorrhizosphere
journal, May 2010
- Calvaruso, C.; Turpault, M. -P.; Leclerc, E.
- Applied and Environmental Microbiology, Vol. 76, Issue 14
Antibiotic-producing ability by representatives of a newly discovered lineage of actinomycetes
journal, March 2006
- Busti, E.
- Microbiology, Vol. 152, Issue 3
Biological costs and benefits to plant–microbe interactions in the rhizosphere
journal, May 2005
- Morgan, J. A. W.; Bending, G. D.; White, P. J.
- Journal of Experimental Botany, Vol. 56, Issue 417
Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests
journal, September 2016
- Kaiser, Kristin; Wemheuer, Bernd; Korolkow, Vera
- Scientific Reports, Vol. 6, Issue 1
454 Pyrosequencing Analysis of Fungal Assemblages from Geographically Distant, Disparate Soils Reveals Spatial Patterning and a Core Mycobiome
journal, February 2013
- Orgiazzi, Alberto; Bianciotto, Valeria; Bonfante, Paola
- Diversity, Vol. 5, Issue 1
Beyond the Venn diagram: the hunt for a core microbiome: The hunt for a core microbiome
journal, October 2011
- Shade, Ashley; Handelsman, Jo
- Environmental Microbiology, Vol. 14, Issue 1
Selective progressive response of soil microbial community to wild oat roots
journal, November 2008
- DeAngelis, Kristen M.; Brodie, Eoin L.; DeSantis, Todd Z.
- The ISME Journal, Vol. 3, Issue 2
Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition
journal, February 2005
- de Ridder-Duine, Annelies S.; Kowalchuk, George A.; Klein Gunnewiek, Paulien J. A.
- Soil Biology and Biochemistry, Vol. 37, Issue 2
The Human Microbiome Project
journal, October 2007
- Turnbaugh, Peter J.; Ley, Ruth E.; Hamady, Micah
- Nature, Vol. 449, Issue 7164
Soil acidity affects fine root turnover of European beech
journal, November 2012
- Richter, A. K.; Hajdas, I.; Frossard, E.
- Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology, Vol. 147, Issue 1
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
journal, June 2009
- Lauber, C. L.; Hamady, M.; Knight, R.
- Applied and Environmental Microbiology, Vol. 75, Issue 15
Influence of chronic ozone stress on carbon translocation pattern into rhizosphere microbial communities of beech trees (Fagus sylvatica L.) during a growing season
journal, July 2009
- Esperschütz, Jürgen; Pritsch, Karin; Gattinger, Andreas
- Plant and Soil, Vol. 323, Issue 1-2
Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands
journal, October 2011
- Collignon, C.; Uroz, S.; Turpault, M-P.
- Soil Biology and Biochemistry, Vol. 43, Issue 10
Influence of mature Douglas fir roots on the solid soil phase of the rhizosphere and its solution chemistry
journal, August 2005
- Turpault, M. -P.; Utérano, C.; Boudot, J. -P.
- Plant and Soil, Vol. 275, Issue 1-2
Soil properties and tree species drive ß-diversity of soil bacterial communities
journal, September 2014
- Landesman, William J.; Nelson, David M.; Fitzpatrick, Matthew C.
- Soil Biology and Biochemistry, Vol. 76
Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes: Research review
journal, August 2005
- Hinsinger, Philippe; Gobran, George R.; Gregory, Peter J.
- New Phytologist, Vol. 168, Issue 2
Rhizosphere Microbial Community Structure in Relation to Root Location and Plant Iron Nutritional Status
journal, January 2000
- Yang, C. -H.; Crowley, D. E.
- Applied and Environmental Microbiology, Vol. 66, Issue 1
Defining the core Arabidopsis thaliana root microbiome
journal, August 2012
- Lundberg, Derek S.; Lebeis, Sarah L.; Paredes, Sur Herrera
- Nature, Vol. 488, Issue 7409
Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil
journal, April 2010
- Uroz, Stéphane; Buée, Marc; Murat, Claude
- Environmental Microbiology Reports, Vol. 2, Issue 2
The Mineral Nutrition of Wild Plants
journal, November 1980
- Chapin, F. S.
- Annual Review of Ecology and Systematics, Vol. 11, Issue 1
Fine Root Biomass, Production, Turnover Rates, and Nutrient Contents in Boreal Forest Ecosystems in Relation to Species, Climate, Fertility, and Stand Age: Literature Review and Meta-Analyses
journal, July 2010
- Yuan, Z. Y.; Chen, Han Y. H.
- Critical Reviews in Plant Sciences, Vol. 29, Issue 4
Impact of flooding on soil bacterial communities associated with poplar (Populus sp.) trees
journal, August 2005
- Graff, Andrea; Conrad, Ralf
- FEMS Microbiology Ecology, Vol. 53, Issue 3
Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce
journal, April 2014
- Schreiter, Susanne; Ding, Guo-Chun; Heuer, Holger
- Frontiers in Microbiology, Vol. 5
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
journal, February 2001
- Chelius, M. K.; Triplett, E. W.
- Microbial Ecology, Vol. 41, Issue 3
Plants impact structure and function of bacterial communities in Arctic soils
journal, October 2015
- Kumar, Manoj; Männistö, Minna K.; van Elsas, Jan Dirk
- Plant and Soil, Vol. 399, Issue 1-2
Influence of Different Cultivars on Populations of Ammonia-Oxidizing Bacteria in the Root Environment of Rice
journal, June 2002
- Briones, A. M.; Okabe, S.; Umemiya, Y.
- Applied and Environmental Microbiology, Vol. 68, Issue 6
Plant-driven selection of microbes
journal, November 2008
- Hartmann, Anton; Schmid, Michael; Tuinen, Diederik van
- Plant and Soil, Vol. 321, Issue 1-2
A core gut microbiome in obese and lean twins
journal, November 2008
- Turnbaugh, Peter J.; Hamady, Micah; Yatsunenko, Tanya
- Nature, Vol. 457, Issue 7228
Distribution of above-ground and below-ground carbohydrate reserves in adult trees of two contrasting broad-leaved species (Quercus petraea and Fagus sylvatica)
journal, March 2003
- Barbaroux, C.; Breda, N.; Dufrene, E.
- New Phytologist, Vol. 157, Issue 3
Does natural regeneration determine the limit of European beech distribution under climatic stress?
journal, February 2012
- E. Silva, D.; Rezende Mazzella, P.; Legay, M.
- Forest Ecology and Management, Vol. 266
Bacterial communities in Arctic fjelds of Finnish Lapland are stable but highly pH-dependent: Bacterial communities in Arctic fjelds of Finnish Lapland
journal, February 2007
- Männistö, Minna K.; Tiirola, Marja; Häggblom, Max M.
- FEMS Microbiology Ecology, Vol. 59, Issue 2
A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013
- Shakya, Migun; Gottel, Neil; Castro, Hector
- PLoS ONE, Vol. 8, Issue 10
Viruses in soils: morphological diversity and abundance in the rhizosphere
journal, August 2009
- Swanson, M. M.; Fraser, G.; Daniell, T. J.
- Annals of Applied Biology, Vol. 155, Issue 1
Moving pictures of the human microbiome
journal, January 2011
- Caporaso, J. Gregory; Lauber, Christian L.; Costello, Elizabeth K.
- Genome Biology, Vol. 12, Issue 5
Acidophilic actinomycetes from rhizosphere soil: diversity and properties beneficial to plants
journal, August 2014
- Poomthongdee, Nalin; Duangmal, Kannika; Pathom-aree, Wasu
- The Journal of Antibiotics, Vol. 68, Issue 2
Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences
journal, September 2015
- Jeanbille, M.; Buée, M.; Bach, C.
- Microbial Ecology, Vol. 71, Issue 2
Going back to the roots: the microbial ecology of the rhizosphere
journal, September 2013
- Philippot, Laurent; Raaijmakers, Jos M.; Lemanceau, Philippe
- Nature Reviews Microbiology, Vol. 11, Issue 11
Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield
journal, January 2015
- Rime, Thomas; Hartmann, Martin; Brunner, Ivano
- Molecular Ecology, Vol. 24, Issue 5
Soil bacterial and fungal communities across a pH gradient in an arable soil
journal, May 2010
- Rousk, Johannes; Bååth, Erland; Brookes, Philip C.
- The ISME Journal, Vol. 4, Issue 10
Rhizospheric P and K in forest soil manipulated with ammonium sulfate and water
journal, November 1997
- Clegg, Stephen; Gobran, George R.
- Canadian Journal of Soil Science, Vol. 77, Issue 4
Soil pH controls the environmental availability of phosphorus: Experimental and mechanistic modelling approaches
journal, November 2009
- Devau, Nicolas; Cadre, Edith Le; Hinsinger, Philippe
- Applied Geochemistry, Vol. 24, Issue 11
Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees
journal, December 2016
- Nicolitch, O.; Colin, Y.; Turpault, M. -P.
- Soil Biology and Biochemistry, Vol. 103
Soil and plant effects on microbial community structure
journal, November 2002
- Buyer, Jeffrey S.; Roberts, Daniel P.; Russek-Cohen, Estelle
- Canadian Journal of Microbiology, Vol. 48, Issue 11
Carbon flow in the rhizosphere: carbon trading at the soil–root interface
journal, February 2009
- Jones, D. L.; Nguyen, C.; Finlay, R. D.
- Plant and Soil, Vol. 321, Issue 1-2
The influence of soil properties on the structure of bacterial and fungal communities across land-use types
journal, September 2008
- Lauber, Christian L.; Strickland, Michael S.; Bradford, Mark A.
- Soil Biology and Biochemistry, Vol. 40, Issue 9
Enrichment of specific bacterial and eukaryotic microbes in the rhizosphere of switchgrass ( P anicum virgatum L.) through root exudates : Root exudate-utilizing microbes in switchgrass rhizosphere
journal, March 2014
- Mao, Yuejian; Li, Xiangzhen; Smyth, Eoghan M.
- Environmental Microbiology Reports, Vol. 6, Issue 3
Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
journal, March 2015
- Bulgarelli, Davide; Garrido-Oter, Ruben; Münch, Philipp C.
- Cell Host & Microbe, Vol. 17, Issue 3
Saliva microbiomes distinguish caries-active from healthy human populations
journal, June 2011
- Yang, Fang; Zeng, Xiaowei; Ning, Kang
- The ISME Journal, Vol. 6, Issue 1
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
journal, October 2009
- Schloss, P. D.; Westcott, S. L.; Ryabin, T.
- Applied and Environmental Microbiology, Vol. 75, Issue 23, p. 7537-7541
Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization
journal, January 2009
- Rousk, J.; Brookes, P. C.; Baath, E.
- Applied and Environmental Microbiology, Vol. 75, Issue 6
Changes in water extractable metals, pH and organic carbon concentrations at the soil-root interface of forested soils
journal, March 2004
- Séguin, Véronique; Gagnon, Christian; Courchesne, François
- Plant and Soil, Vol. 260, Issue 1/2
Bacterial diversity promotes community stability and functional resilience after perturbation
journal, March 2005
- Girvan, M. S.; Campbell, C. D.; Killham, K.
- Environmental Microbiology, Vol. 7, Issue 3
The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts
journal, April 2015
- D. Ainsworth, Tracy; Krause, Lutz; Bridge, Thomas
- The ISME Journal, Vol. 9, Issue 10
Manipulating the soil microbiome to increase soil health and plant fertility
journal, May 2012
- Chaparro, Jacqueline M.; Sheflin, Amy M.; Manter, Daniel K.
- Biology and Fertility of Soils, Vol. 48, Issue 5
Effect of the Mycorrhizosphere on the Genotypic and Metabolic Diversity of the Bacterial Communities Involved in Mineral Weathering in a Forest Soil
journal, March 2007
- Uroz, S.; Calvaruso, C.; Turpault, M. P.
- Applied and Environmental Microbiology, Vol. 73, Issue 9
Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems
journal, November 2011
- Uroz, Stéphane; Oger, Phil; Lepleux, Cendrella
- Research in Microbiology, Vol. 162, Issue 9
Role of root derived organic acids in the mobilization of nutrients from the rhizosphere
journal, October 1994
- Jones, David L.; Darrah, Peter R.
- Plant and Soil, Vol. 166, Issue 2
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere: Plant species, soil type and rhizosphere communities
journal, April 2009
- Berg, Gabriele; Smalla, Kornelia
- FEMS Microbiology Ecology, Vol. 68, Issue 1
A global analysis of root distributions for terrestrial biomes
journal, November 1996
- Jackson, R. B.; Canadell, J.; Ehleringer, J. R.
- Oecologia, Vol. 108, Issue 3
Plant host habitat and root exudates shape soil bacterial community structure
journal, August 2008
- Haichar, Feth el Zahar; Marol, Christine; Berge, Odile
- The ISME Journal, Vol. 2, Issue 12
Modeling wave-like dynamics of oligotrophic and copiotrophic bacteria along wheat roots in response to nutrient input from a growing root tip
journal, November 2005
- Zelenev, V. V.; van Bruggen, A. H. C.; Semenov, A. M.
- Ecological Modelling, Vol. 188, Issue 2-4
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
journal, August 2012
- Bulgarelli, Davide; Rott, Matthias; Schlaeppi, Klaus
- Nature, Vol. 488, Issue 7409
The diversity and biogeography of soil bacterial communities
journal, January 2006
- Fierer, N.; Jackson, R. B.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 3
Development of a Common Oligonucleotide Reference Standard for Microarray Data Normalization and Comparison across Different Microbial Communities
journal, December 2009
- Liang, Y.; He, Z.; Wu, L.
- Applied and Environmental Microbiology, Vol. 76, Issue 4
Low-molecular organic acids in the rhizosphere soil solution of beech forest (Fagus sylvatica L.) cambisols determined by ion chromatography using supported liquid membrane enrichment technique
journal, September 1996
- Shen, Yin; Ström, Lena; Jönsson, Jan-Åke
- Soil Biology and Biochemistry, Vol. 28, Issue 9
The CRISPR-Cas immune system: Biology, mechanisms and applications
journal, October 2015
- Rath, Devashish; Amlinger, Lina; Rath, Archana
- Biochimie, Vol. 117
Bioactive Microbial Metabolites: A Personal View
journal, January 2005
- Bérdy, János
- The Journal of Antibiotics, Vol. 58, Issue 1
Species distributions in response to individual soil nutrients and seasonal drought across a community of tropical trees
journal, February 2013
- Condit, R.; Engelbrecht, B. M. J.; Pino, D.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 13
Root exudation and root development of lettuce (Lactuca sativa L. cv. Tizian) as affected by different soils
journal, January 2014
- Neumann, G.; Bott, S.; Ohler, M. A.
- Frontiers in Microbiology, Vol. 5
Impact of forest tree species on feldspar weathering rates
journal, June 2000
- Augusto, Laurent; Turpault, Marie-Pierre; Ranger, Jacques
- Geoderma, Vol. 96, Issue 3
Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification
journal, July 2006
- Wu, L.; Liu, X.; Schadt, C. W.
- Applied and Environmental Microbiology, Vol. 72, Issue 7
On the niche breadth of Fagus sylvatica : soil nutrient status in 50 Central European beech stands on a broad range of bedrock types
journal, May 2006
- Leuschner, Christoph; Meier, Ina C.; Hertel, Dietrich
- Annals of Forest Science, Vol. 63, Issue 4
Vertical distribution and radial growth of coarse roots in pure and mixed stands of Fagus sylvatica and Picea abies
journal, March 2001
- Schmid, Iris; Kazda, Marian
- Canadian Journal of Forest Research, Vol. 31, Issue 3
Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities
journal, June 2014
- Paula, Fabiana S.; Rodrigues, Jorge L. M.; Zhou, Jizhong
- Molecular Ecology, Vol. 23, Issue 12
Distribution of Root-Associated Bacterial Communities Along a Salt-Marsh Primary Succession
journal, January 2016
- Wang, Miao; Yang, Pu; Falcão Salles, Joana
- Frontiers in Plant Science, Vol. 6
Toward an Ecological Classification of soil Bacteria
journal, June 2007
- Fierer, Noah; Bradford, Mark A.; Jackson, Robert B.
- Ecology, Vol. 88, Issue 6
Defining the core Arabidopsis thaliana root microbiome
text, January 2012
- E., Ley, Ruth; Julien, Tremblay,; L., Dangl, Jeffery
- The University of North Carolina at Chapel Hill University Libraries
Vertical distribution and radial growth of coarse roots in pure and mixed stands of Fagus sylvatica and Picea abies
journal, January 2001
- Schmid, Iris; Kazda, Marian
- Canadian Journal of Forest Research, Vol. 31, Issue 3
Works referencing / citing this record:
Ecological Processes Shaping Bulk Soil and Rhizosphere Microbiome Assembly in a Long-Term Amazon Forest-to-Agriculture Conversion
journal, June 2019
- Goss-Souza, Dennis; Mendes, Lucas William; Rodrigues, Jorge Luiz Mazza
- Microbial Ecology, Vol. 79, Issue 1
Drivers of microbial community structure in forest soils
journal, March 2018
- Lladó, Salvador; López-Mondéjar, Rubén; Baldrian, Petr
- Applied Microbiology and Biotechnology, Vol. 102, Issue 10
A microcosm approach highlights the response of soil mineral weathering bacterial communities to an increase of K and Mg availability
journal, October 2019
- Nicolitch, O.; Feucherolles, M.; Churin, J. -L.
- Scientific Reports, Vol. 9, Issue 1
Host species identity in annual Brassicaceae has a limited effect on the assembly of root-endophytic fungal communities
journal, September 2018
- Glynou, Kyriaki; Thines, Marco; Maciá-Vicente, Jose G.
- Plant Ecology & Diversity, Vol. 11, Issue 5-6
Amazon forest-to-agriculture conversion alters rhizosphere microbiome composition while functions are kept
journal, February 2019
- Goss-Souza, Dennis; Mendes, Lucas William; Borges, Clovis Daniel
- FEMS Microbiology Ecology, Vol. 95, Issue 3
Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies: Microbiome structure and function in fungal fruiting-bodies
journal, March 2018
- Pent, Mari; Hiltunen, Markus; Põldmaa, Kadri
- Environmental Microbiology, Vol. 20, Issue 5
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
journal, May 2019
- Veach, Allison M.; Morris, Reese; Yip, Daniel Z.
- Microbiome, Vol. 7, Issue 1
Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum
journal, June 2019
- Splivallo, Richard; Vahdatzadeh, Maryam; Maciá-Vicente, Jose G.
- Frontiers in Microbiology, Vol. 10
Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests
journal, July 2019
- Dukunde, Amélie; Schneider, Dominik; Schmidt, Marcus
- Frontiers in Microbiology, Vol. 10
Microbiome Dynamics Associated With the Atacama Flowering Desert
journal, January 2020
- Araya, Juan Pablo; González, Máximo; Cardinale, Massimiliano
- Frontiers in Microbiology, Vol. 10
Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect
journal, January 2019
- Plassart, Pierre; Prévost-Bouré, Nicolas Chemidlin; Uroz, Stéphane
- Scientific Reports, Vol. 9, Issue 1