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Title: Advances and Challenges in Metatranscriptomic Analysis

Journal Article · · Frontiers in Genetics

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Sponsoring Organization:
USDOE National Nuclear Security Administration (NNSA); Defense Threat Reduction Agency (DTRA); USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI ID:
1566265
Journal Information:
Frontiers in Genetics, Journal Name: Frontiers in Genetics Vol. 10; ISSN 1664-8021
Publisher:
FrontiersCopyright Statement
Country of Publication:
Switzerland
Language:
English

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Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation journal January 2014
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Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination journal March 2018
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling journal August 2018
Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle journal January 2019
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes journal August 2009
BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data journal February 2016
Metagenome and Metatranscriptome Analyses Using Protein Family Profiles journal July 2016
Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities journal August 2008
Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils journal January 2012
Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma journal June 2015
Dissection of Microbial Community Functions during a Cyanobacterial Bloom in the Baltic Sea via Metatranscriptomics journal February 2018
Strand-specific community RNA-seq reveals prevalent and dynamic antisense transcription in human gut microbiota journal September 2015
Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur journal December 2017
Metatranscriptome Sequencing Reveals Insights into the Gene Expression and Functional Potential of Rumen Wall Bacteria journal January 2018
Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes journal March 2018
Comparative Metatranscriptomics of Wheat Rhizosphere Microbiomes in Disease Suppressive and Non-suppressive Soils for Rhizoctonia solani AG8 journal May 2018
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Metagenomic and Metatranscriptomic Analyses of Diverse Watermelon Cultivars Reveal the Role of Fruit Associated Microbiome in Carbohydrate Metabolism and Ripening of Mature Fruits journal January 2018
Use of Metatranscriptomics in Microbiome Research journal January 2016
How to normalize metatranscriptomic count data for differential expression analysis journal January 2017