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Title: Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

Journal Article · · Frontiers in Microbiology
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Sponsoring Organization:
USDOE
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1564534
Journal Information:
Frontiers in Microbiology, Journal Name: Frontiers in Microbiology Vol. 10; ISSN 1664-302X
Publisher:
Frontiers Media SACopyright Statement
Country of Publication:
Switzerland
Language:
English

References (539)

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Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., Psychrophilic Bacteria Isolated from Antarctic Lacustrine and Sea Ice Habitats journal July 1997
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Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov. journal January 1998
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Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms journal April 1999
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Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of [Cytophaga] lytica to Cellulophaga lytica gen. nov., comb. nov. journal July 1999
Bacteroides acidifaciens sp. nov., isolated from the caecum of mice journal January 2000
Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland journal January 2000
Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov journal May 2000
Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3) journal November 2000
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Gram-negative anaerobic rods: Minutes of the meetings, 9 and 10 July 2000, Manchester, UK journal September 2001
Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment journal November 2001
Anaerophaga thermohalophila gen. nov., sp. nov., a moderately thermohalophilic, strictly anaerobic fermentative bacterium. journal January 2002
Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats. journal September 2002
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Hydrobacter penzbergensis gen. nov., sp. nov., isolated from purified water journal January 2015
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Ichthyenterobacterium magnum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from olive flounder (Paralichthys olivaceus) journal April 2015
Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter journal April 2015
Flavirhabdus iliipiscaria gen. nov., sp. nov., isolated from intestine of flounder (Paralichthys olivaceus) and emended descriptions of the genera Flavivirga, Algibacter, Bizionia and Formosa journal April 2015
Marivirga atlantica sp. nov., isolated from seawater and emended description of the genus Marivirga journal February 2015
Pedobacter nyackensis sp. nov., Pedobacter alluvionis sp. nov. and Pedobacter borealis sp. nov., isolated from Montana flood-plain sediment and forest soil journal June 2009
Maribacter spongiicola sp. nov. and Maribacter vaceletii sp. nov., isolated from marine sponges, and emended description of the genus Maribacter
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  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7 https://doi.org/10.1099/ijs.0.000224
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Cecembia rubra sp. nov., a thermophilic bacterium isolated from a hot spring sediment journal July 2015
Elizabethkingia endophytica sp. nov., isolated from Zea mays and emended description of Elizabethkingia anophelis Kämpfer et al. 2011
  • Glaeser, Stefanie P.; Kämpfer, Peter; Busse, Hans-Jürgen
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7 https://doi.org/10.1099/ijs.0.000236
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Chryseobacterium arachidiradicis sp. nov., isolated from the geocarposphere (soil around the peanut) of very immature peanuts (Arachis hypogaea) journal July 2015
Longimonas halophila gen. nov., sp. nov., isolated from a marine solar saltern journal July 2015
Dokdonia pacifica sp. nov., isolated from seawater journal July 2015
Gelidibacter sediminis sp. nov., isolated from a sediment sample of the Yellow Sea journal July 2015
Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp. nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca journal August 2015
Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample journal August 2015
Flavobacterium nitrogenifigens sp. nov., isolated from switchgrass (Panicum virgatum) journal September 2015
Bizionia arctica sp. nov., isolated from Arctic fjord seawater, and emended description of the genus Bizionia journal September 2015
Filimonas lacunae gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from fresh water journal April 2009
Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque journal February 2009
Deinococcus mumbaiensis Shashidhar and Bandekar 2006 is a later heterotypic synonym of Deinococcus ficus Lai et al. 2006 journal February 2009
Pedobacter composti sp. nov., isolated from compost journal February 2009
Psychroflexus sediminis sp. nov., a mesophilic bacterium isolated from salt lake sediment in China journal March 2009
Aequorivita capsosiphonis sp. nov., isolated from the green alga Capsosiphon fulvescens, and emended description of the genus Aequorivita journal April 2009
Pseudozobellia thermophila gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae, isolated from the green alga Ulva fenestrata journal April 2009
Marinoscillum gen. nov., a member of the family 'Flexibacteraceae', with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov. journal April 2009
Deinococcus gobiensis sp. nov., an extremely radiation-resistant bacterium journal June 2009
Pedobacter oryzae sp. nov., isolated from rice paddy soil journal July 2009
Planobacterium taklimakanense gen. nov., sp. nov., a member of the family Flavobacteriaceae that exhibits swimming motility, isolated from desert soil journal June 2009
Chryseobacterium piscicola sp. nov., isolated from diseased salmonid fish journal July 2009
Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family 'Porphyromonadaceae' isolated from rat faeces journal June 2009
Muricauda olearia sp. nov., isolated from crude-oil-contaminated seawater, and emended description of the genus Muricauda journal June 2009
Phocaeicola abscessus gen. nov., sp. nov., an anaerobic bacterium isolated from a human brain abscess sample journal July 2009
Pedobacter glucosidilyticus sp. nov., isolated from dry riverbed soil journal July 2009
Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium journal July 2009
Lishizhenia tianjinensis sp. nov., isolated from coastal seawater journal July 2009
Marinifilum fragile gen. nov., sp. nov., isolated from tidal flat sediment journal July 2009
Belliella pelovolcani sp. nov., isolated from a mud-volcano in Taiwan journal July 2009
Leeuwenhoekiella palythoae sp. nov., a new member of the family Flavobacteriaceae journal July 2009
Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes journal July 2009
Mucilaginibacter rigui sp. nov., isolated from wetland freshwater, and emended description of the genus Mucilaginibacter journal July 2009
Chitinophaga rupis sp. nov., isolated from soil journal July 2009
Mesonia phycicola sp. nov., isolated from seaweed, and emended description of the genus Mesonia journal August 2009
Maribacter stanieri sp. nov., a marine bacterium of the family Flavobacteriaceae journal July 2009
Lutibacter maritimus sp. nov., isolated from a tidal flat sediment journal August 2009
Rhodothermus profundi sp. nov., a thermophilic bacterium isolated from a deep-sea hydrothermal vent in the Pacific Ocean journal January 2010
Bizionia echini sp. nov., isolated from a sea urchin journal August 2009
Parapedobacter luteus sp. nov. and Parapedobacter composti sp. nov., isolated from cotton waste compost journal September 2009
Flavobacterium glycines sp. nov., a facultative methylotroph isolated from the rhizosphere of soybean journal November 2009
Flavobacterium sinopsychrotolerans sp. nov., isolated from a glacier journal January 2010
Description of Olleya aquimaris sp. nov., isolated from seawater, and emended description of the genus Olleya Mancuso Nichols et al. 2005 journal August 2009
Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces journal August 2009
Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil journal October 2009
Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla sericea' Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov. journal September 2009
Fontibacter flavus gen. nov., sp. nov., a member of the family 'Cyclobacteriaceae', isolated from a hot spring journal October 2009
Dyadobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from soil journal August 2009
Chryseobacterium treverense sp. nov., isolated from a human clinical source journal October 2009
Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater journal October 2009
Mucilaginibacter gossypii sp. nov. and Mucilaginibacter gossypiicola sp. nov., plant-growth-promoting bacteria isolated from cotton rhizosphere soils journal November 2009
Ekhidna lutea gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from the South East Pacific Ocean journal January 2010
Pedobacter bauzanensis sp. nov., isolated from soil journal December 2009
Mucilaginibacter frigoritolerans sp. nov., Mucilaginibacter lappiensis sp. nov. and Mucilaginibacter mallensis sp. nov., isolated from soil and lichen samples journal January 2010
Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil journal December 2009
Chryseobacterium culicis sp. nov., isolated from the midgut of the mosquito Culex quinquefasciatus journal November 2009
Bacteroides faecis sp. nov., isolated from human faeces journal December 2009
Chryseobacterium chaponense sp. nov., isolated from farmed Atlantic salmon (Salmo salar) journal April 2010
Bacteroides paurosaccharolyticus sp. nov., isolated from a methanogenic reactor treating waste from cattle farms journal March 2010
Kordia periserrulae sp. nov., isolated from a marine polychaete Periserrula leucophryna, and emended description of the genus Kordia journal May 2010
Hydrotalea flava gen. nov., sp. nov., a new member of the phylum Bacteroidetes and allocation of the genera Chitinophaga, Sediminibacterium, Lacibacter, Flavihumibacter, Flavisolibacter, Niabella, Niastella, Segetibacter, Parasegetibacter, Terrimonas, Ferruginibacter, Filimonas and Hydrotalea to the family Chitinophagaceae fam. nov. journal April 2010
Chitinophaga eiseniae sp. nov., isolated from vermicompost journal November 2010
Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia journal March 2010
Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios journal November 2010
Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces journal January 2003
Oceanithermus profundus gen. nov., sp. nov., a thermophilic, microaerophilic, facultatively chemolithoheterotrophic bacterium from a deep-sea hydrothermal vent journal May 2003
Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces journal May 2010
Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences journal July 2003
Myroides marinus sp. nov., a member of the family Flavobacteriaceae, isolated from seawater journal May 2010
Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite journal September 2003
Cesiribacter andamanensis gen. nov., sp. nov., isolated from a soil sample from a mud volcano journal July 2010
Ohtaekwangia koreensis gen. nov., sp. nov. and Ohtaekwangia kribbensis sp. nov., isolated from marine sand, deep-branching members of the phylum Bacteroidetes journal May 2010
Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kutz) Kornm journal November 2003
Deinococcus reticulitermitis sp. nov., isolated from a termite gut journal February 2011
Pedobacter rhizosphaerae sp. nov. and Pedobacter soli sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris) journal January 2011
Reichenbachiella faecimaris sp. nov., isolated from a tidal flat, and emended descriptions of the genus Reichenbachiella and Reichenbachiella agariperforans journal September 2010
Sunxiuqinia elliptica gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment in a sea cucumber farm journal January 2011
Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas journal July 2011
Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata journal January 2004
Aureibacter tunicatorum gen. nov., sp. nov., a marine bacterium isolated from a coral reef sea squirt, and description of Flammeovirgaceae fam. nov. journal October 2010
Formosa algae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae journal May 2004
Algoriphagus faecimaris sp. nov., isolated from coastal sediment journal January 2011
Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov. journal July 2004
Flavobacterium degerlachei sp. nov., Flavobacterium frigoris sp. nov. and Flavobacterium micromati sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes journal January 2004
Schleiferia thermophila gen. nov., sp. nov., a slightly thermophilic bacterium of the phylum 'Bacteroidetes' and the proposal of Schleiferiaceae fam. nov. journal November 2010
Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004 journal September 2004
Myroides phaeus sp. nov., isolated from human saliva, and emended descriptions of the genus Myroides and the species Myroides profundi Zhang et al. 2009 and Myroides marinus Cho et al. 2011 journal May 2011
Algibacter lectus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from green algae journal July 2004
Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes journal November 2004
Kaistella koreensis gen. nov., sp. nov., a novel member of the Chryseobacterium-Bergeyella-Riemerella branch journal November 2004
Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice journal July 2011
Tenacibaculum jejuense sp. nov., isolated from coastal seawater journal April 2011
Muricauda flavescens sp. nov. and Muricauda aquimarina sp. nov., isolated from a salt lake near Hwajinpo Beach of the East Sea in Korea, and emended description of the genus Muricauda journal May 2005
Algoriphagus aquaeductus sp. nov., isolated from a freshwater pipe journal May 2011
Flavobacterium ummariense sp. nov., isolated from hexachlorocyclohexane-contaminated soil, and emended description of Flavobacterium ceti Vela et al. 2007 journal December 2011
Pedobacter arcticus sp. nov., a facultative psychrophile isolated from Arctic soil, and emended descriptions of the genus Pedobacter, Pedobacter heparinus, Pedobacter daechungensis, Pedobacter terricola, Pedobacter glucosidilyticus and Pedobacter lentus journal October 2011
Aureitalea marina gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater journal June 2011
Salinibacter iranicus sp. nov. and Salinibacter luteus sp. nov., isolated from a salt lake, and emended descriptions of the genus Salinibacter and of Salinibacter ruber journal August 2011
Winogradskyella ulvae sp. nov., an epiphyte of a Pacific seaweed, and emended descriptions of the genus Winogradskyella and Winogradskyella thalassocola, Winogradskyella echinorum, Winogradskyella exilis and Winogradskyella eximia journal August 2011
Geofilum rubicundum gen. nov., sp. nov., isolated from deep subseafloor sediment journal June 2011
Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces journal July 2011
Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae journal October 2011
Pedobacter luteus sp. nov., isolated from soil journal July 2012
Flavobacterium chilense sp. nov. and Flavobacterium araucananum sp. nov., isolated from farmed salmonid fish journal August 2011
Flavivirga jejuensis gen. nov., sp. nov., and Flavivirga amylovorans sp. nov., new members of the family Flavobacteriaceae isolated from seawater, and emended descriptions of the genera Psychroserpens and Lacinutrix journal June 2011
Hydrotalea sandarakina sp. nov., isolated from a hot spring runoff, and emended descriptions of the genus Hydrotalea and the species Hydrotalea flava journal September 2011
Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority journal July 2011
Fulvivirga imtechensis sp. nov., a member of the phylum Bacteroidetes journal November 2011
Arcicella rigui sp. nov., isolated from water of a wetland, and emended descriptions of the genus Arcicella, Arcicella aquatica, Arcicella rosea and Arcicella aurantiaca journal February 2012
Isolates belonging to CDC group II-i belong predominantly to Sphingobacterium mizutaii Yabuuchi et al. 1983: emended descriptions of S. mizutaii and of the genus Sphingobacterium journal December 2011
Pseudarcicella hirudinis gen. nov., sp. nov., isolated from the skin of the medical leech Hirudo medicinalis journal November 2011
Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana journal March 2012
Parabacteroides chartae sp. nov., an obligately anaerobic species from wastewater of a paper mill journal December 2011
Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake journal December 2011
Thermophagus xiamenensis gen. nov., sp. nov., a moderately thermophilic and strictly anaerobic bacterium isolated from hot spring sediment journal February 2012
Sediminibacterium ginsengisoli sp. nov., isolated from soil of a ginseng field, and emended descriptions of the genus Sediminibacterium and of Sediminibacterium salmoneum journal May 2012
Reclassification of Xylanibacter oryzae Ueki et al. 2006 as Prevotella oryzae comb. nov., with an emended description of the genus Prevotella journal December 2011
Pedobacter tournemirensis sp. nov., isolated from a fault water sample of a deep Toarcian argillite layer journal March 2012
Pedobacter ruber sp. nov., a psychrophilic bacterium isolated from soil journal March 2012
Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil journal April 2012
Maribacter chungangensis sp. nov., isolated from a green seaweed, and emended descriptions of the genus Maribacter and Maribacter arcticus journal December 2012
Flavobacterium enshiense sp. nov., isolated from soil, and emended descriptions of the genus Flavobacterium and Flavobacterium cauense, Flavobacterium saliperosum and Flavobacterium suncheonense journal May 2012
Chryseobacterium taihuense sp. nov., isolated from a eutrophic lake, and emended descriptions of the genus Chryseobacterium, Chryseobacterium taiwanense, Chryseobacterium jejuense and Chryseobacterium indoltheticum journal May 2012
Flavobacterium anatoliense sp. nov., isolated from fresh water, and emended description of Flavobacterium ceti journal October 2012
Arenibacter hampyeongensis sp. nov., a marine bacterium isolated from a tidal flat journal April 2012
Bizionia hallyeonensis sp. nov., isolated from seawater in an oyster farm journal April 2012
Lacinutrix himadriensis sp. nov., a psychrophilic bacterium isolated from a marine sediment, and emended description of the genus Lacinutrix journal May 2012
Bacteroides reticulotermitis sp. nov., isolated from the gut of a subterranean termite (Reticulitermes speratus) journal April 2012
Flavobacterium tilapiae sp. nov., isolated from a freshwater pond, and emended descriptions of Flavobacterium defluvii and Flavobacterium johnsoniae journal May 2012
Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri journal July 2012
Psychroserpens damuponensis sp. nov., isolated from seawater journal April 2012
Sinomicrobium oceani gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment journal June 2012
Marinivirga aestuarii gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from marine environments, and emended descriptions of the genera Hyunsoonleella, Jejuia and Pontirhabdus and the species Hyunsoonleella jejuensis, Jejuia pallidilutea and Pontirhabdus pectinivorans journal August 2012
Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority journal March 2012
Lutibacter flavus sp. nov., a marine bacterium isolated from a tidal flat sediment journal June 2012
Mooreia alkaloidigena gen. nov., sp. nov. and Catalinimonas alkaloidigena gen. nov., sp. nov., alkaloid-producing marine bacteria in the proposed families Mooreiaceae fam. nov. and Catalimonadaceae fam. nov. in the phylum Bacteroidetes journal June 2012
Sphingobacterium psychroaquaticum sp. nov., a psychrophilic bacterium isolated from Lake Michigan water journal June 2012
Olleya namhaensis sp. nov., isolated from wood falls, and emended description of the genus Olleya Mancuso Nichols et al. 2005 emend. Lee et al. 2010 journal August 2012
Arcticibacter svalbardensis gen. nov., sp. nov., of the family Sphingobacteriaceae in the phylum Bacteroidetes, isolated from Arctic soil journal August 2012
Flavobacterium aciduliphilum sp. nov., isolated from freshwater, and emended description of the genus Flavobacterium journal August 2012
Nafulsella turpanensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil journal August 2012
Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater journal September 2012
Flavobacterium jumunjinense sp. nov., isolated from a lagoon, and emended descriptions of Flavobacterium cheniae, Flavobacterium dongtanense and Flavobacterium gelidilacus journal May 2013
Flavobacterium noncentrifugens sp. nov., a psychrotolerant bacterium isolated from glacier meltwater journal October 2012
Algibacter aquimarinus sp. nov., isolated from a marine environment, and reclassification of Pontirhabdus pectinivorans as Algibacter pectinivorans comb. nov. journal October 2012
Pontibacter ramchanderi sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment journal January 2013
Rubrivirga marina gen. nov., sp. nov., a member of the family Rhodothermaceae isolated from deep seawater journal November 2012
Flavobacterium squillarum sp. nov., isolated from a freshwater shrimp culture pond, and emended descriptions of Flavobacterium haoranii, Flavobacterium cauense, Flavobacterium terrae and Flavobacterium aquatile journal November 2012
Polaribacter sejongensis sp. nov., isolated from Antarctic soil, and emended descriptions of the genus Polaribacter, Polaribacter butkevichii and Polaribacter irgensii journal May 2013
Flavobacterium akiainvivens sp. nov., from decaying wood of Wikstroemia oahuensis, Hawai'i, and emended description of the genus Flavobacterium journal March 2013
Asinibacterium lactis gen. nov., sp. nov., a member of the family Chitinophagaceae, isolated from donkey (Equus asinus) milk journal February 2013
Lutibacter agarilyticus sp. nov., a marine bacterium isolated from shallow coastal seawater journal January 2013
Pustulibacterium marinum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the Bashi Channel journal February 2013
Flavobacterium cutihirudinis sp. nov., isolated from the skin of the medical leech Hirudo verbana journal January 2013
Flavobacterium marinum sp. nov., isolated from seawater journal April 2013
Arenitalea lutea gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from intertidal sand journal January 2013
Aquimarina amphilecti sp. nov., isolated from the sponge Amphilectus fucorum journal October 2013
Heliimonas saccharivorans gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a mineral water aquifer, and emended description of Filimonas lacunae journal May 2013
Maribacter aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Maribacter journal March 2013
Parabacteroides chinchillae sp. nov., isolated from chinchilla (Chincilla lanigera) faeces journal April 2013
Dyadobacter tibetensis sp. nov., isolated from glacial ice core journal April 2013
Niabella hirudinis and Niabella drilacis sp. nov., isolated from the medicinal leech Hirudo verbana journal March 2013
Fabibacter pacificus sp. nov., a moderately halophilic bacterium isolated from seawater journal April 2013
Algibacter agarivorans sp. nov. and Algibacter agarilyticus sp. nov., isolated from seawater, reclassification of Marinivirga aestuarii as Algibacter aestuarii comb. nov. and emended description of the genus Algibacter journal March 2013
Flavobacterium spartansii sp. nov., a pathogen of fishes, and emended descriptions of Flavobacterium aquidurense and Flavobacterium araucananum journal October 2013
Gracilimonas mengyeensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-western China journal May 2013
Coprobacter fastidiosus gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from infant faeces journal June 2013
Chryseobacterium aahli sp. nov., isolated from lake trout (Salvelinus namaycush) and brown trout (Salmo trutta), and emended descriptions of Chryseobacterium ginsenosidimutans and Chryseobacterium gregarium journal January 2014
Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium journal August 2013
Mangrovibacterium diazotrophicum gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov. journal November 2013
Carboxylicivirga gen. nov. in the family Marinilabiliaceae with two novel species, Carboxylicivirga mesophila sp. nov. and Carboxylicivirga taeanensis sp. nov., and reclassification of Cytophaga fermentans as Saccharicrinis fermentans gen. nov., comb. nov. journal January 2014
Zunongwangia mangrovi sp. nov., isolated from mangrove (Avicennia marina) rhizosphere, and emended description of the genus Zunongwangia journal October 2013
Flaviramulus ichthyoenteri sp. nov., an N-acylhomoserine lactone-degrading bacterium isolated from the intestine of a flounder (Paralichthys olivaceus), and emended descriptions of the genus Flaviramulus and Flaviramulus basaltis journal July 2013
Pseudopedobacter beijingensis gen. nov., sp. nov., isolated from coking wastewater activated sludge, and reclassification of Pedobacter saltans as Pseudopedobacter saltans comb. nov. journal February 2014
Flavobacterium longum sp. nov. and Flavobacterium urocaniciphilum sp. nov., isolated from a wastewater treatment plant, and emended descriptions of Flavobacterium caeni and Flavobacterium terrigena journal January 2014
DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov. journal August 2013
Robertkochia marina gen. nov., sp. nov., of the family Flavobacteriaceae, isolated from surface seawater, and emended descriptions of the genera Joostella and Galbibacter journal October 2013
Reclassification of Sphingobacterium antarcticum Shivaji et al. 1992 as Pedobacter antarcticus comb. nov. and Pedobacter piscium (Takeuchi and Yokota 1993) Steyn et al. 1998 as a later heterotypic synonym of Pedobacter antarcticus journal December 2013
Wenyingzhuangia marina gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a recirculating mariculture system journal October 2013
Pontibacter indicus sp. nov., isolated from hexachlorocyclohexane-contaminated soil journal September 2013
Mucilaginibacter polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Mucilaginibacter journal January 2014
Algoriphagus taeanensis sp. nov., isolated from a tidal flat, and emended description of Algoriphagus hitonicola journal September 2013
Flavobacterium tructae sp. nov. and Flavobacterium piscis sp. nov., isolated from farmed rainbow trout (Oncorhynchus mykiss) journal September 2013
Nonlabens antarcticus sp. nov., a psychrophilic bacterium isolated from glacier ice, and emended descriptions of Nonlabens marinus Park et al. 2012 and Nonlabens agnitus Yi and Chun 2012 journal September 2013
Bacteroides luti sp. nov., an anaerobic, cellulolytic and xylanolytic bacterium isolated from methanogenic sludge journal February 2014
Proposal of Vibrionimonas magnilacihabitans gen. nov., sp. nov., a curved Gram-stain-negative bacterium isolated from lake water journal October 2013
Chitinophaga jiangningensis sp. nov., a mineral-weathering bacterium journal September 2013
Myroides xuanwuensis sp. nov., a mineral-weathering bacterium isolated from forest soil journal October 2013
Hungatella effluvii gen. nov., sp. nov., an obligately anaerobic bacterium isolated from an effluent treatment plant, and reclassification of Clostridium hathewayi as Hungatella hathewayi gen. nov., comb. nov. journal November 2013
Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age journal February 2014
Thermoflavifilum aggregans gen. nov., sp. nov., a thermophilic and slightly halophilic filamentous bacterium from the phylum Bacteroidetes journal January 2014
Pedobacter jejuensis sp. nov., isolated from soil of a pine grove, and emended description of the genus Pedobacter journal February 2014
Salinimicrobium sediminis sp. nov., isolated from a deep-sea sediment journal December 2013
Crenotalea thermophila gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a hot spring journal January 2014
Pedobacter nutrimenti sp. nov., isolated from chilled food journal January 2014
Chryseobacterium gallinarum sp. nov., isolated from a chicken, and Chryseobacterium contaminans sp. nov., isolated as a contaminant from a rhizosphere sample journal January 2014
Description of Anaerobacterium chartisolvens gen. nov., sp. nov., an obligately anaerobic bacterium from Clostridium rRNA cluster III isolated from soil of a Japanese rice field, and reclassification of Bacteroides cellulosolvens Murray et al. 1984 as Pseudobacteroides cellulosolvens gen. nov., comb. nov. journal January 2014
Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen. nov., Terrisporobacter gen. nov. and Asaccharospora gen. nov. journal January 2014
Moheibacter sediminis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from sediment, and emended descriptions of Empedobacter brevis, Wautersiella falsenii and Weeksella virosa journal January 2014
Terrimicrobium sacchariphilum gen. nov., sp. nov., an anaerobic bacterium of the class 'Spartobacteria' in the phylum Verrucomicrobia, isolated from a rice paddy field journal February 2014
Mucilaginibacter auburnensis sp. nov., isolated from a plant stem journal February 2014
Mesoflavibacter aestuarii sp. nov., a zeaxanthin-producing marine bacterium isolated from seawater journal March 2014
Pedobacter huanghensis sp. nov. and Pedobacter glacialis sp. nov., isolated from Arctic glacier foreland journal April 2014
Dysgonomonas macrotermitis sp. nov., isolated from the hindgut of a fungus-growing termite journal June 2014
Parafilimonas terrae gen. nov., sp. nov., isolated from greenhouse soil journal June 2014
Saccharicrinis carchari sp. nov., isolated from a shark, and emended descriptions of the genus Saccharicrinis and Saccharicrinis fermentans journal April 2014
Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma journal June 2014
Deinococcus phoenicis sp. nov., an extreme ionizing-radiation-resistant bacterium isolated from the Phoenix Lander assembly facility journal July 2014
Phaeodactylibacter xiamenensis gen. nov., sp. nov., a member of the family Saprospiraceae isolated from the marine alga Phaeodactylum tricornutum journal July 2014
Acetobacteroides hydrogenigenes gen. nov., sp. nov., an anaerobic hydrogen-producing bacterium in the family Rikenellaceae isolated from a reed swamp journal June 2014
Sphingobacterium gobiense sp. nov., isolated from soil of the Gobi Desert journal September 2014
Maribacter thermophilus sp. nov., isolated from an algal bloom in an intertidal zone, and emended description of the genus Maribacter journal September 2014
Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas journal June 2014
Pedobacter xixiisoli sp. nov., isolated from bank soil journal August 2014
Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov. journal August 2014
Hanstruepera neustonica gen. nov., sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from estuarine water, and emendation of Sediminibacter furfurosus Khan et al. 2007 emend. Kwon et al. 2014, Mangrovimonas yunxiaonensis Li et al. 2013, Antarcticimonas flava Yang et al. 2009 and Hoppeia youngheungensis Kwon et al. 2014 journal October 2014
Tangfeifania diversioriginum gen. nov., sp. nov., a representative of the family Draconibacteriaceae journal July 2014
Mesoflavibacter sabulilitoris sp. nov., isolated from seashore sand journal August 2014
Parasegetibacter terrae sp. nov., isolated from paddy soil and emended description of the genus Parasegetibacter journal October 2014
Parapedobacter indicus sp. nov., isolated from hexachlorocyclohexane-contaminated soil journal October 2014
The status of the name Lactobacillus rogosae Holdeman and Moore 1974. Opinion 88.Judicial Commission of the International Committee on Systematics of Prokaryotes journal October 2014
Spongiibacterium pacificum sp. nov., isolated from seawater of South Pacific Gyre and emended description of the genus Spongiibacterium journal October 2014
International Committee on Systematics of Prokaryotes; Subcommittee on the taxonomy of Gram-negative anaerobic rods: Minutes of the meeting, 23 September 2007, Edinburgh, UK journal April 2008
Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces journal December 2008
Deinococcus aquatilis sp. nov., isolated from water journal December 2008
Pibocella ponti gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi journal January 2005
Gillisia mitskevichiae sp. nov., a novel bacterium of the family Flavobacteriaceae, isolated from sea water journal January 2005
Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic journal January 2005
Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum 'Bacteroidetes', isolated from the green alga Ulva fenestrata journal January 2005
Bizionia paragorgiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the soft coral Paragorgia arborea journal January 2005
Petrimonas sulfuriphila gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir journal May 2005
Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients journal January 2008
Dyadobacter crusticola sp. nov., from biological soil crusts in the Colorado Plateau, USA, and an emended description of the genus Dyadobacter Chelius and Triplett 2000 journal May 2005
Chryseobacterium taichungense sp. nov., isolated from contaminated soil journal May 2005
Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia journal July 2005
Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga journal September 2005
Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum journal May 2005
Olleya marilimosa gen. nov., sp. nov., an exopolysaccharide-producing marine bacterium from the family Flavobacteriaceae, isolated from the Southern Ocean journal July 2005
Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert journal November 2005
Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces journal September 2005
Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater journal November 2005
Nonlabens tegetincola gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a microbial mat in a subtropical estuary journal November 2005
Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum 'Bacteroidetes', and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003 journal November 2005
Polaribacter dokdonensis sp. nov., isolated from seawater journal June 2006
Chryseobacterium soldanellicola sp. nov. and Chryseobacterium taeanense sp. nov., isolated from roots of sand-dune plants journal February 2006
Formosa agariphila sp. nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa journal January 2006
Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan journal January 2006
Stenothermobacter spongiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a marine sponge in the Bahamas, and emended description of Nonlabens tegetincola journal January 2006
Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov. journal January 2006
Pedobacter roseus sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter journal August 2006
Description of Fabibacter halotolerans gen. nov., sp. nov. and Roseivirga spongicola sp. nov., and reclassification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov. journal May 2006
Aquimarina intermedia sp. nov., reclassification of Stanierella latercula (Lewin 1969) as Aquimarina latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 as Aquimarina brevivitae comb. nov. and emended description of the genus Aquimarina journal September 2006
Flavobacterium weaverense sp. nov. and Flavobacterium segetis sp. nov., novel psychrophiles isolated from the Antarctic journal June 2006
Salegentibacter agarivorans sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the sponge Artemisina sp. journal April 2006
Psychroserpens mesophilus sp. nov., a mesophilic marine bacterium belonging to the family Flavobacteriaceae isolated from a young biofilm journal May 2006
Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter journal August 2006
Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris) journal March 2007
Cloacibacterium normanense gen. nov., sp. nov., a novel bacterium in the family Flavobacteriaceae isolated from municipal wastewater journal June 2006
Transfer of [Flexibacter] sancti, [Flexibacter] filiformis, [Flexibacter] japonensis and [Cytophaga] arvensicola to the genus Chitinophaga and description of Chitinophaga skermanii sp. nov. journal September 2006
Proposal of Hymenobacter norwichensis sp. nov., classification of 'Taxeobacter ocellatus', 'Taxeobacter gelupurpurascens' and 'Taxeobacter chitinovorans' as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999 journal September 2006
Flaviramulus basaltis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from seafloor basalt journal October 2006
Flavobacterium croceum sp. nov., isolated from activated sludge journal October 2006
Isolation of aerobic, gliding, xylanolytic and laminarinolytic bacteria from acidic Sphagnum peatlands and emended description of Chitinophaga arvensicola Kampfer et al. 2006 journal December 2006
Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum journal December 2006
Olivibacter sitiensis gen. nov., sp. nov., isolated from alkaline olive-oil mill wastes in the region of Sitia, Crete journal February 2007
Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium isolated from the China No.1 glacier journal December 2006
Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome journal May 2007
Zhouia amylolytica gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from sediment of the South China Sea journal December 2006
Fulvivirga kasyanovii gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from seawater in a mussel farm journal May 2007
Parapedobacter koreensis gen. nov., sp. nov. journal June 2007
Chitinophaga ginsengisegetis sp. nov. and Chitinophaga ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea journal July 2007
Tamlana crocina gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae, isolated from beach sediment in Korea journal April 2007
Sediminitomix flava gen. nov., sp. nov., of the phylum Bacteroidetes, isolated from marine sediment journal August 2007
Dyadobacter koreensis sp. nov., isolated from fresh water journal June 2007
Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil journal July 2007
Pseudosphingobacterium domesticum gen. nov., sp. nov., isolated from home-made compost journal July 2007
Pedobacter insulae sp. nov., isolated from soil journal September 2007
Proposal of Algoriphagus vanfongensis sp. nov., transfer of members of the genera Hongiella Yi and Chun 2004 emend. Nedashkovskaya et al. 2004 and Chimaereicella Tiago et al. 2006 to the genus Algoriphagus, and emended description of the genus Algoriphagus Bowman et al. 2003 emend. Nedashkovskaya et al. 2004 journal September 2007
Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog journal October 2007
Flavobacterium ceti sp. nov., isolated from beaked whales (Ziphius cavirostris) journal November 2007
Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter journal September 2007
Pedobacter duraquae sp. nov., Pedobacter westerhofensis sp. nov., Pedobacter metabolipauper sp. nov., Pedobacter hartonius sp. nov. and Pedobacter steynii sp. nov., isolated from a hard-water rivulet journal October 2007
Maribacter polysiphoniae sp. nov., isolated from a red alga journal December 2007
Spirosoma rigui sp. nov., isolated from fresh water journal December 2007
Emended descriptions of the genus Lewinella and of Lewinella cohaerens, Lewinella nigricans and Lewinella persica, and description of Lewinella lutea sp. nov. and Lewinella marina sp. nov. journal December 2007
Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants journal January 2008
Diversity of Capnocytophaga species in children and description of Capnocytophaga leadbetteri sp. nov. and Capnocytophaga genospecies AHN8471 journal February 2008
Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter journal April 2008
Nubsella zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Sphingobacteriaceae isolated from freshwater journal March 2008
Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir journal September 2008
Flavobacterium anhuiense sp. nov., isolated from field soil journal April 2008
Flavobacterium lindanitolerans sp. nov., isolated from hexachlorocyclohexane-contaminated soil journal July 2008
Robiginitalea myxolifaciens sp. nov., a novel myxol-producing bacterium isolated from marine sediment, and emended description of the genus Robiginitalea journal July 2008
Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica journal October 2008
Reclassification of Roseivirga seohaensis (Yoon et al. 2005) Lau et al. 2006 as a later synonym of Roseivirga ehrenbergii Nedashkovskaya et al. 2005 and emendation of the species description journal May 2008
Description of Croceitalea gen. nov. in the family Flavobacteriaceae with two species, Croceitalea eckloniae sp. nov. and Croceitalea dokdonensis sp. nov., isolated from the rhizosphere of the marine alga Ecklonia kurome journal November 2008
Tamlana agarivorans sp. nov., isolated from seawater off Jeju Island in Korea journal August 2008
Mucilaginibacter kameinonensis sp., nov., isolated from garden soil journal September 2008
Pedobacter agri sp. nov., from soil journal July 2008
Lacinutrix algicola sp. nov. and Lacinutrix mariniflava sp. nov., two novel marine alga-associated bacteria and emended description of the genus Lacinutrix journal December 2008
Chryseobacterium oranimense sp. nov., a psychrotolerant, proteolytic and lipolytic bacterium isolated from raw cow's milk journal November 2008
Chryseobacterium hungaricum sp. nov., isolated from hydrocarbon-contaminated soil journal December 2008
Fabibacter misakiensis sp. nov., a marine bacterium isolated from coastal surface water journal October 2015
Spirosoma fluviale sp. nov., isolated from river water journal October 2015
Saccharicrinis marinus sp. nov., isolated from marine sediment journal October 2015
Flavobacterium endophyticum sp. nov., a nifH gene-harbouring endophytic bacterium isolated from maize root journal November 2015
Xanthomarina gelatinilytica gen. nov., sp. nov., isolated from seawater journal November 2015
Myroides indicus sp. nov., isolated from garden soil journal November 2015
Muricauda pacifica sp. nov., isolated from seawater of the South Pacific Gyre journal November 2015
Bacteroides caecigallinarum sp. nov., isolated from caecum of an Indonesian chicken journal December 2015
Chitinophaga dinghuensis sp. nov., isolated from soil journal December 2015
Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes journal November 2015
Belliella buryatensis sp. nov., isolated from alkaline lake water journal January 2016
Parasediminibacterium paludis gen. nov., sp. nov., isolated from wetland journal January 2016
Ichthyobacterium seriolicida gen. nov., sp. nov., a member of the phylum ‘Bacteroidetes’, isolated from yellowtail fish (Seriola quinqueradiata) affected by bacterial haemolytic jaundice, and proposal of a new family, Ichthyobacteriaceae fam. nov. journal February 2016
Chryseobacterium frigidum sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of Chryseobacterium bernardetii and Chryseobacterium taklimakanense journal February 2016
Confluentibacter lentus gen. nov., sp. nov., isolated from the junction between the ocean and a freshwater lake journal February 2016
Deinococcus actinosclerus sp. nov., a novel bacterium isolated from soil of a rocky hillside journal February 2016
Mongoliibacter ruber gen. nov., sp. nov., a haloalkalitolerant bacterium of the family Cyclobacteriaceae isolated from a haloalkaline lake journal February 2016
Fabivirga thermotolerans gen. nov., sp. nov., a novel marine bacterium isolated from culture broth of a marine cyanobacterium journal February 2016
Pontibacter ummariensis sp. nov., isolated from a hexachlorocyclohexane-contaminated soil journal February 2016
Leeuwenhoekiella nanhaiensis sp. nov., isolated from deep-sea water journal March 2016
Bacteroides caecicola sp. nov. and Bacteroides gallinaceum sp. nov., isolated from the caecum of an Indonesian chicken journal March 2016
Description of Proteiniphilum saccharofermentans sp. nov., Petrimonas mucosa sp. nov. and Fermentimonas caenicola gen. nov., sp. nov., isolated from mesophilic laboratory-scale biogas reactors, and emended description of the genus Proteiniphilum journal March 2016
Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium journal March 2016
Mucilaginibacter yixingensis sp. nov., isolated from vegetable soil journal April 2016
Flavobacterium aquicola sp. nov., isolated from river water journal August 2016
Lentimicrobium saccharophilum gen. nov., sp. nov., a strictly anaerobic bacterium representing a new family in the phylum Bacteroidetes, and proposal of Lentimicrobiaceae fam. nov. journal July 2016
Prevotella colorans sp. nov., isolated from a human wound journal August 2016
Cephaloticoccus gen. nov., a new genus of ‘Verrucomicrobia’ containing two novel species isolated from Cephalotes ant guts journal August 2016
Winogradskyella sediminis sp. nov., isolated from marine sediment journal August 2016
Longibacter salinarum gen. nov., sp. nov., isolated from a marine solar saltern journal September 2016
Flavisolibacter tropicus sp. nov., isolated from tropical soil journal September 2016
Oceanihabitans sediminis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the Yellow Sea journal September 2016
Vitellibacter aquimaris sp. nov., a marine bacterium isolated from seawater journal September 2016
Lacinutrix cladophorae sp. nov., a flavobacterium isolated from the green alga Cladophora stimpsonii, transfer of Flavirhabdus iliipiscaria Shakeela et al. 2015 to the genus Lacinutrix as Lacinutrix iliipiscaria comb. nov. and emended description of the genus Lacinutrix journal November 2016
Pontibacter virosus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite journal November 2016
Balneicella halophila gen. nov., sp. nov., an anaerobic bacterium, isolated from a thermal spring and description of Balneicellaceae fam. nov. journal November 2016
Maripseudobacter aurantiacus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a sedimentation basin journal April 2017
Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root, and emended description of Chryseobacterium arthrosphaerae journal March 2017
Flavobacterium cloacae sp. nov., isolated from waste water journal March 2017
Algibacter aquaticus sp. nov., a slightly alkaliphilic marine Flavobacterium isolated from coastal surface water journal July 2017
Bizionia sediminis sp. nov., isolated from coastal sediment journal July 2017
Pedobacter psychrophilus sp. nov., isolated from fragmentary rock journal August 2017
Algoriphagus marinus sp. nov., isolated from marine sediment and emended description of the genus Algoriphagus journal July 2017
Croceivirga radicis gen. nov., sp. nov., isolated from a rotten tropical mangrove root journal October 2017
Geofilum rhodophaeum sp. nov., isolated from coastal sediment journal October 2017
Confluentibacter citreus sp. nov., isolated from lake sediment, and emended description of the genus Confluentibacter journal October 2017
Williamwhitmania taraxaci gen. nov., sp. nov., a proteolytic anaerobe with a novel type of cytology from Lake Untersee in Antarctica, description of Williamwhitmaniaceae fam. nov., and emendation of the order Bacteroidales Krieg 2012 journal October 2017
Croceitalea marina sp. nov., isolated from marine particles of Yellow Sea, and emended description of the genera Croceitalea journal October 2017
Soonwooa purpurea sp. nov., isolated from a fresh water river
  • Sirra, Mercy Rose Stella; Padakandla, Shalem Raj; Chae, Jong-Chan
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 12 https://doi.org/10.1099/ijsem.0.002441
journal December 2017
Flavobacterium commune sp. nov., isolated from freshwater and emended description of Flavobacterium seoulense journal January 2018
Proposal of the suffix –ota to denote phyla. Addendum to ‘Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes’ journal March 2018
Flagellimonas aquimarina sp. nov., and transfer of Spongiibacterium flavum Yoon and Oh 2012 and S. pacificum Gao et al. 2015 to the genus Flagellimonas Bae et al. 2007 as Flagellimonas flava comb. nov. and F. pacifica comb. nov., respectively journal October 2018
Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages journal April 2018
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes journal September 2003
Initiation of the flexirubin biosynthesis in C hitinophaga pinensis : Flexirubin biosynthesis journal January 2014
A review of long-branch attraction journal April 2005
TNT, a free program for phylogenetic analysis journal October 2008
Unringing a bell: metazoan phylogenomics and the partition bootstrap journal November 2009
Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes: Xylan degradation by gut Bacteroidetes journal December 2010
Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae journal June 2004
Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited: Prokaryotic taxonomy in the sequencing era journal October 2011
Diversity and functional analysis of proteorhodopsin in marine Flavobacteria: Diversity and functional analysis of proteorhodopsin journal February 2012
Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis journal August 2009
Gliding Motility and Por Secretion System Genes Are Widespread among Members of the Phylum Bacteroidetes journal November 2012
Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria. journal February 1994
Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information journal August 2017
Phylogenetic Systematics journal January 1965
To name or not to name: Criteria to promote economy of change in Linnaean classification schemes journal April 2013
BLAST+: architecture and applications journal January 2009
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
Genome sequence-based species delimitation with confidence intervals and improved distance functions journal January 2013
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences journal July 2006
Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy journal January 2014
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals journal July 2016
High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes journal July 2015
Origin of an Alternative Genetic Code in the Extremely Small and GC–Rich Genome of a Bacterial Symbiont journal July 2009
Evidence of Selection upon Genomic GC-Content in Bacteria journal September 2010
GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands journal February 2015
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation journal December 2012
Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex journal February 2016
Formal Definitions of Paraphyly and Polyphyly journal December 1974
Phylogenetic Analysis Under Dollo's Law journal March 1977
The Retention Index and Homoplasy Excess journal December 1989
Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. nov., Sphingobacterium heparinum comb. nov., sphingobacterium thalpophilum comb. nov. and two genospecies of the genus Sphingobacterium, and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum. journal January 1992
Environmental and Gut Bacteroidetes: The Food Connection journal January 2011
Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov. journal August 2014
Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae journal June 2016
Genome-Based Taxonomic Classification of Bacteroidetes journal December 2016
Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae journal December 2017
Genome-Based Taxonomic Classification of the Phylum Actinobacteria journal August 2018
Biochemical and Molecular Characterization of Carotenogenic Flavobacterial Isolates from Marine Waters journal January 2016

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