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Title: Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

Abstract

Although considerable progress has been made in recent years regarding the classification of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify taxonomic relationships within a diverse assemblage that includes organisms of clinical, piscicultural, and ecological importance. Bacteroidetes classification has proved to be difficult, not least when taxonomic decisions rested heavily on interpretation of poorly resolved 16S rRNA gene trees and a limited number of phenotypic features. Here, draft genome sequences of a greatly enlarged collection of genomes of more than 1,000 Bacteroidetes and outgroup type strains were used to infer phylogenetic trees from genome-scale data using the principles drawn from phylogenetic systematics. The majority of taxa were found to be monophyletic but several orders, families and genera, including taxa proposed long ago such as Bacteroides, Cytophaga, and Flavobacterium but also quite recent taxa, as well as a few species were shown to be in need of revision. According proposals are made for the recognition of new orders, families and genera, as well as the transfer of a variety of species to other genera. In addition, emended descriptions are given for many species mainly involving information on DNA G+C content and (approximate) genome size, both ofmore » which can be considered valuable taxonomic markers. We detected many incongruities when comparing the results of the present study with existing classifications, which appear to be caused by insufficiently resolved 16S rRNA gene trees or incomplete taxon sampling. The few significant incongruities found between 16S rRNA gene and whole genome trees underline the pitfalls inherent in phylogenies based upon single gene sequences and the impediment in using ordinary bootstrapping in phylogenomic studies, particularly when combined with too narrow gene selections. While a significant degree of phylogenetic conservation was detected in all phenotypic characters investigated, the overall fit to the tree varied considerably, which is one of the probable causes of misclassifications in the past, much like the use of plesiomorphic character states as diagnostic features.« less

Authors:
; ; ; ; ; ; ;
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1564534
Alternate Identifier(s):
OSTI ID: 1580865
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Published Article
Journal Name:
Frontiers in Microbiology
Additional Journal Information:
Journal Name: Frontiers in Microbiology Journal Volume: 10; Journal ID: ISSN 1664-302X
Publisher:
Frontiers Media SA
Country of Publication:
Switzerland
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; G+C content; genome size; genome BLAST distance phylogeny; chemotaxonomy; morphology; phylogenetic systematics; phylogenomics

Citation Formats

García-López, Marina, Meier-Kolthoff, Jan P., Tindall, Brian J., Gronow, Sabine, Woyke, Tanja, Kyrpides, Nikos C., Hahnke, Richard L., and Göker, Markus. Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Switzerland: N. p., 2019. Web. doi:10.3389/fmicb.2019.02083.
García-López, Marina, Meier-Kolthoff, Jan P., Tindall, Brian J., Gronow, Sabine, Woyke, Tanja, Kyrpides, Nikos C., Hahnke, Richard L., & Göker, Markus. Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Switzerland. doi:10.3389/fmicb.2019.02083.
García-López, Marina, Meier-Kolthoff, Jan P., Tindall, Brian J., Gronow, Sabine, Woyke, Tanja, Kyrpides, Nikos C., Hahnke, Richard L., and Göker, Markus. Mon . "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Switzerland. doi:10.3389/fmicb.2019.02083.
@article{osti_1564534,
title = {Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes},
author = {García-López, Marina and Meier-Kolthoff, Jan P. and Tindall, Brian J. and Gronow, Sabine and Woyke, Tanja and Kyrpides, Nikos C. and Hahnke, Richard L. and Göker, Markus},
abstractNote = {Although considerable progress has been made in recent years regarding the classification of bacteria assigned to the phylum Bacteroidetes, there remains a need to further clarify taxonomic relationships within a diverse assemblage that includes organisms of clinical, piscicultural, and ecological importance. Bacteroidetes classification has proved to be difficult, not least when taxonomic decisions rested heavily on interpretation of poorly resolved 16S rRNA gene trees and a limited number of phenotypic features. Here, draft genome sequences of a greatly enlarged collection of genomes of more than 1,000 Bacteroidetes and outgroup type strains were used to infer phylogenetic trees from genome-scale data using the principles drawn from phylogenetic systematics. The majority of taxa were found to be monophyletic but several orders, families and genera, including taxa proposed long ago such as Bacteroides, Cytophaga, and Flavobacterium but also quite recent taxa, as well as a few species were shown to be in need of revision. According proposals are made for the recognition of new orders, families and genera, as well as the transfer of a variety of species to other genera. In addition, emended descriptions are given for many species mainly involving information on DNA G+C content and (approximate) genome size, both of which can be considered valuable taxonomic markers. We detected many incongruities when comparing the results of the present study with existing classifications, which appear to be caused by insufficiently resolved 16S rRNA gene trees or incomplete taxon sampling. The few significant incongruities found between 16S rRNA gene and whole genome trees underline the pitfalls inherent in phylogenies based upon single gene sequences and the impediment in using ordinary bootstrapping in phylogenomic studies, particularly when combined with too narrow gene selections. While a significant degree of phylogenetic conservation was detected in all phenotypic characters investigated, the overall fit to the tree varied considerably, which is one of the probable causes of misclassifications in the past, much like the use of plesiomorphic character states as diagnostic features.},
doi = {10.3389/fmicb.2019.02083},
journal = {Frontiers in Microbiology},
number = ,
volume = 10,
place = {Switzerland},
year = {2019},
month = {9}
}

Journal Article:
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DOI: 10.3389/fmicb.2019.02083

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Pedobacter nyackensis sp. nov., Pedobacter alluvionis sp. nov. and Pedobacter borealis sp. nov., isolated from Montana flood-plain sediment and forest soil
journal, June 2009

  • Gordon, N. S.; Valenzuela, A.; Adams, S. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 7
  • DOI: 10.1099/ijs.0.000158-0

Bizionia sediminis sp. nov., isolated from coastal sediment
journal, July 2017

  • Zhang, Hui; Shi, Ming-Jing; Xia, Hai-Feng
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 7
  • DOI: 10.1099/ijsem.0.001936

Parapedobacter koreensis gen. nov., sp. nov.
journal, June 2007

  • Kim, M. K.; Na, J. -R.; Cho, D. H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 6
  • DOI: 10.1099/ijs.0.64677-0

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
journal, January 2018


Flexirubin-type pigments in Flavobacterium
journal, July 1980

  • Reichenbach, H.; Kohl, W.; B�ttger-Vetter, Angelika
  • Archives of Microbiology, Vol. 126, Issue 3
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Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter
journal, August 2006

  • Gallego, V.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 8
  • DOI: 10.1099/ijs.0.64176-0

Pustulibacterium marinum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the Bashi Channel
journal, February 2013

  • Wang, G.; Zhou, D.; Dai, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 8
  • DOI: 10.1099/ijs.0.048413-0

Chitinophaga rupis sp. nov., isolated from soil
journal, July 2009

  • Lee, D. W.; Lee, J. -E.; Lee, S. D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 11
  • DOI: 10.1099/ijs.0.011163-0

Moheibacter sediminis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from sediment, and emended descriptions of Empedobacter brevis, Wautersiella falsenii and Weeksella virosa
journal, January 2014

  • Zhang, R. -G.; Tan, X.; Zhao, X. -M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 5
  • DOI: 10.1099/ijs.0.060178-0

Pedobacter luteus sp. nov., isolated from soil
journal, July 2012

  • Oh, H. -W.; Kim, B. -C.; Park, D. -S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 4
  • DOI: 10.1099/ijs.0.033134-0

Pedobacter roseus sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter
journal, August 2006

  • Hwang, C. Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 8
  • DOI: 10.1099/ijs.0.64045-0

Novel ultramicrobacterial isolates from a deep Greenland ice core represent a proposed new species, Chryseobacterium greenlandense sp. nov.
journal, November 2009


Parabacteroides chartae sp. nov., an obligately anaerobic species from wastewater of a paper mill
journal, December 2011

  • Tan, H. -Q.; Li, T. -T.; Zhu, C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 11
  • DOI: 10.1099/ijs.0.038000-0

Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil
journal, December 2009

  • Lee, M.; Woo, S. -G.; Park, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 11
  • DOI: 10.1099/ijs.0.019653-0

Proposal for the recognition of two species in the genus Chlamydia Jones, Rake, and Stearns, 1945
journal, January 1968


A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium,Nitrospira moscoviensis sp. nov. and its phylogenetic relationship
journal, July 1995

  • Ehrich, Silke; Behrens, Doris; Lebedeva, Elena
  • Archives of Microbiology, Vol. 164, Issue 1
  • DOI: 10.1007/BF02568729

Geofilum rubicundum gen. nov., sp. nov., isolated from deep subseafloor sediment
journal, June 2011

  • Miyazaki, M.; Koide, O.; Kobayashi, T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 5
  • DOI: 10.1099/ijs.0.032326-0

Pontibacter ummariensis sp. nov., isolated from a hexachlorocyclohexane-contaminated soil
journal, February 2016

  • Mahato, N. K.; Tripathi, C.; Nayyar, N.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 2
  • DOI: 10.1099/ijsem.0.000840

Proposal of Vibrionimonas magnilacihabitans gen. nov., sp. nov., a curved Gram-stain-negative bacterium isolated from lake water
journal, October 2013

  • Albert, R. A.; Zitomer, D.; Dollhopf, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.056663-0

Reclassification of Xylanibacter oryzae Ueki et al. 2006 as Prevotella oryzae comb. nov., with an emended description of the genus Prevotella
journal, December 2011

  • Sakamoto, M.; Ohkuma, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 11
  • DOI: 10.1099/ijs.0.038638-0

Leeuwenhoekiella palythoae sp. nov., a new member of the family Flavobacteriaceae
journal, July 2009

  • Nedashkovskaya, O. I.; Vancanneyt, M.; Kim, S. B.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 12
  • DOI: 10.1099/ijs.0.010371-0

Chitinophaga ginsengisegetis sp. nov. and Chitinophaga ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea
journal, July 2007

  • Lee, H. -G.; An, D. -S.; Im, W. -T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 7
  • DOI: 10.1099/ijs.0.64688-0

International Committee on Systematics of Prokaryotes; Subcommittee on the taxonomy of Gram-negative anaerobic rods: Minutes of the meeting, 23 September 2007, Edinburgh, UK
journal, April 2008

  • Olsen, I.; Shah, H. N.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 4
  • DOI: 10.1099/ijs.0.2008/000661-0

Bacteroides tectum sp. nov. and Characteristics of Other Nonpigmented Bacteroides Isolates from Soft-Tissue Infections from Cats and Dogs
journal, April 1986

  • Love, D. N.; Johnson, J. L.; Jones, R. F.
  • International Journal of Systematic Bacteriology, Vol. 36, Issue 2
  • DOI: 10.1099/00207713-36-2-123

Pedobacter ruber sp. nov., a psychrophilic bacterium isolated from soil
journal, March 2012

  • Margesin, R.; Zhang, D. -C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 1
  • DOI: 10.1099/ijs.0.039107-0

Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana
journal, March 2012

  • Jeong, S. H.; Park, M. S.; Jin, H. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 1
  • DOI: 10.1099/ijs.0.037846-0

Lacinutrix algicola sp. nov. and Lacinutrix mariniflava sp. nov., two novel marine alga-associated bacteria and emended description of the genus Lacinutrix
journal, December 2008

  • Nedashkovskaya, O. I.; Kwon, K. K.; Yang, S. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 12
  • DOI: 10.1099/ijs.0.65799-0

Muricauda olearia sp. nov., isolated from crude-oil-contaminated seawater, and emended description of the genus Muricauda
journal, June 2009

  • Hwang, C. Y.; Kim, M. H.; Bae, G. D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 8
  • DOI: 10.1099/ijs.0.007708-0

When should a DDH experiment be mandatory in microbial taxonomy?
journal, April 2013

  • Meier-Kolthoff, Jan P.; Göker, Markus; Spröer, Cathrin
  • Archives of Microbiology, Vol. 195, Issue 6
  • DOI: 10.1007/s00203-013-0888-4

Bacteroides heparinolyticus sp. nov. Isolated from Humans with Periodontitis
journal, October 1985

  • Okuda, K.; Kato, T.; Shiozu, J.
  • International Journal of Systematic Bacteriology, Vol. 35, Issue 4
  • DOI: 10.1099/00207713-35-4-438

Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter
journal, April 2008

  • Barbeyron, T.; Carpentier, F.; L'Haridon, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 4
  • DOI: 10.1099/ijs.0.65469-0

Gliding Motility and Por Secretion System Genes Are Widespread among Members of the Phylum Bacteroidetes
journal, November 2012

  • McBride, Mark J.; Zhu, Yongtao
  • Journal of Bacteriology, Vol. 195, Issue 2
  • DOI: 10.1128/JB.01962-12

Bacteroides luti sp. nov., an anaerobic, cellulolytic and xylanolytic bacterium isolated from methanogenic sludge
journal, February 2014

  • Hatamoto, M.; Kaneshige, M.; Nakamura, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 5
  • DOI: 10.1099/ijs.0.056630-0

Nonlabens tegetincola gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a microbial mat in a subtropical estuary
journal, November 2005

  • Lau, S. C. K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 6
  • DOI: 10.1099/ijs.0.63810-0

Tenacibaculum jejuense sp. nov., isolated from coastal seawater
journal, April 2011

  • Oh, Y. -S.; Kahng, H. -Y.; Lee, D. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue 2
  • DOI: 10.1099/ijs.0.030114-0

Spirosoma rigui sp. nov., isolated from fresh water
journal, December 2007

  • Baik, K. S.; Kim, M. S.; Park, S. C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 12
  • DOI: 10.1099/ijs.0.65302-0

Pibocella ponti gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi
journal, January 2005

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 1
  • DOI: 10.1099/ijs.0.63251-0

Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family 'Porphyromonadaceae' isolated from rat faeces
journal, June 2009

  • Sakamoto, M.; Takagaki, A.; Matsumoto, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 7
  • DOI: 10.1099/ijs.0.007674-0

Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats.
journal, September 2002

  • Bowman, John P.; Nichols, David S.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 52, Issue 5
  • DOI: 10.1099/00207713-52-5-1533

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
journal, April 2011

  • Letunic, I.; Bork, P.
  • Nucleic Acids Research, Vol. 39, Issue suppl
  • DOI: 10.1093/nar/gkr201

Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma
journal, June 2014

  • Ahn, J. -H.; Weon, H. -Y.; Kim, S. -J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 9
  • DOI: 10.1099/ijs.0.062901-0

Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter
journal, April 2015

  • Singh, Hina; Kim, Ki-Young; Yi, Tae-Hoo
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 4
  • DOI: 10.1099/ijs.0.000087

Fabibacter pacificus sp. nov., a moderately halophilic bacterium isolated from seawater
journal, April 2013

  • Huo, Y. -Y.; Xu, L.; Wang, C. -S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 10
  • DOI: 10.1099/ijs.0.051276-0

Fulvivirga kasyanovii gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from seawater in a mussel farm
journal, May 2007

  • Nedashkovskaya, O. I.; Kim, S. B.; Shin, D. S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 5
  • DOI: 10.1099/ijs.0.64641-0

Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla sericea' Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov.
journal, September 2009

  • Nedashkovskaya, O. I.; Vancanneyt, M.; Kim, S. B.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 8
  • DOI: 10.1099/ijs.0.016121-0

VICTOR: genome-based phylogeny and classification of prokaryotic viruses
journal, July 2017


Salegentibacter agarivorans sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the sponge Artemisina sp.
journal, April 2006

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 4
  • DOI: 10.1099/ijs.0.64167-0

Salinimicrobium sediminis sp. nov., isolated from a deep-sea sediment
journal, December 2013

  • Subhash, Y.; Sasikala, C.; Ramana, C. V.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 3
  • DOI: 10.1099/ijs.0.058149-0

Mucilaginibacter kameinonensis sp., nov., isolated from garden soil
journal, September 2008

  • Urai, M.; Aizawa, T.; Nakagawa, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 9
  • DOI: 10.1099/ijs.0.65777-0

Mucilaginibacter rigui sp. nov., isolated from wetland freshwater, and emended description of the genus Mucilaginibacter
journal, July 2009

  • Baik, K. S.; Park, S. C.; Kim, E. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 1
  • DOI: 10.1099/ijs.0.011130-0

Deinococcus soli sp. nov., a Gamma-Radiation-Resistant Bacterium Isolated from Rice Field Soil
journal, February 2014


Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kutz) Kornm
journal, November 2003

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 53, Issue 6
  • DOI: 10.1099/ijs.0.02626-0

Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., Psychrophilic Bacteria Isolated from Antarctic Lacustrine and Sea Ice Habitats
journal, July 1997

  • Bowman, J. P.; McCammon, S. A.; Brown, J. L.
  • International Journal of Systematic Bacteriology, Vol. 47, Issue 3
  • DOI: 10.1099/00207713-47-3-670

Phaeodactylibacter xiamenensis gen. nov., sp. nov., a member of the family Saprospiraceae isolated from the marine alga Phaeodactylum tricornutum
journal, July 2014

  • Chen, Z.; Lei, X.; Lai, Q.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 10
  • DOI: 10.1099/ijs.0.063909-0

Pedobacter psychrophilus sp. nov., isolated from fragmentary rock
journal, August 2017

  • Švec, Pavel; Králová, Stanislava; Busse, Hans-Jürgen
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 8
  • DOI: 10.1099/ijsem.0.001962

Flavobacterium endophyticum sp. nov., a nifH gene-harbouring endophytic bacterium isolated from maize root
journal, November 2015

  • Gao, Jun-lian; Lv, Fan-yang; Wang, Xu-ming
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 11
  • DOI: 10.1099/ijsem.0.000513

Approved Lists of Bacterial Names
journal, January 1980

  • Sneath, P. H. A.; McGOWAN, Vicki; Skerman, V. B. D.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 30, Issue 1
  • DOI: 10.1099/00207713-30-1-225

The status of the name Lactobacillus rogosae Holdeman and Moore 1974. Opinion 88.Judicial Commission of the International Committee on Systematics of Prokaryotes
journal, October 2014

  • Tindall, B. J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 10
  • DOI: 10.1099/ijs.0.069146-0

Phylogenetic Diversity of the Deinococci as Determined by 16S Ribosomal DNA Sequence Comparison
journal, April 1997

  • Rainey, F. A.; Nobre, M. F.; Schumann, P.
  • International Journal of Systematic Bacteriology, Vol. 47, Issue 2
  • DOI: 10.1099/00207713-47-2-510

Xanthomarina gelatinilytica gen. nov., sp. nov., isolated from seawater
journal, November 2015

  • Vaidya, Bhumika; Kumar, Ravinder; Sharma, Gunjan
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 11
  • DOI: 10.1099/ijsem.0.000515

Kordia periserrulae sp. nov., isolated from a marine polychaete Periserrula leucophryna, and emended description of the genus Kordia
journal, May 2010

  • Choi, A.; Oh, H. -M.; Yang, S. -J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 4
  • DOI: 10.1099/ijs.0.022764-0

Chryseobacterium rhizoplanae sp. nov., isolated from the rhizoplane environment
journal, December 2014

  • Kämpfer, Peter; McInroy, John A.; Glaeser, Stefanie P.
  • Antonie van Leeuwenhoek, Vol. 107, Issue 2
  • DOI: 10.1007/s10482-014-0349-3

Flavobacterium anhuiense sp. nov., isolated from field soil
journal, April 2008

  • Liu, H.; Liu, R.; Yang, S. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 4
  • DOI: 10.1099/ijs.0.65536-0

Multilocus sequence analysis (MLSA) in prokaryotic taxonomy
journal, June 2015


Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic
journal, January 2005

  • Yi, H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 1
  • DOI: 10.1099/ijs.0.63273-0

Psychroflexus sediminis sp. nov., a mesophilic bacterium isolated from salt lake sediment in China
journal, March 2009

  • Chen, Y. -G.; Cui, X. -L.; Wang, Y. -X.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 3
  • DOI: 10.1099/ijs.0.003269-0

Porphyromonas gingivicanis sp. nov. and Porphyromonas crevioricanis sp. nov., Isolated from Beagles
journal, October 1994


NOTES: Prevotella, a New Genus To Include Bacteroides melaninogenicus and Related Species Formerly Classified in the Genus Bacteroides
journal, April 1990

  • Shah, H. N.; Collins, D. M.
  • International Journal of Systematic Bacteriology, Vol. 40, Issue 2
  • DOI: 10.1099/00207713-40-2-205

Pedobacter bauzanensis sp. nov., isolated from soil
journal, December 2009

  • Zhang, D. -C.; Schinner, F.; Margesin, R.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 11
  • DOI: 10.1099/ijs.0.018903-0

Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces
journal, August 2009

  • Nagai, F.; Morotomi, M.; Watanabe, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 6
  • DOI: 10.1099/ijs.0.014571-0

Pseudozobellia thermophila gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae, isolated from the green alga Ulva fenestrata
journal, April 2009

  • Nedashkovskaya, O. I.; Suzuki, M.; Lee, J. -S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 4
  • DOI: 10.1099/ijs.0.004143-0

Leeuwenhoekiella nanhaiensis sp. nov., isolated from deep-sea water
journal, March 2016

  • Liu, Qianfeng; Li, Jiangtao; Wei, Bingbing
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 3
  • DOI: 10.1099/ijsem.0.000883

Algoriphagus marinus sp. nov., isolated from marine sediment and emended description of the genus Algoriphagus
journal, July 2017

  • Han, Ji-Ru; Geng, Qing-Li; Wang, Feng-Qing
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 7
  • DOI: 10.1099/ijsem.0.001971

Chryseobacterium frigidum sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of Chryseobacterium bernardetii and Chryseobacterium taklimakanense
journal, February 2016

  • Kim, TongRyul; Kim, MyongChol; Kang, OkChol
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 2
  • DOI: 10.1099/ijsem.0.000761

Fabibacter misakiensis sp. nov., a marine bacterium isolated from coastal surface water
journal, October 2015

  • Lee, Jung-Sook; Hamasaki, Koji; Park, Sanghwa
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 10
  • DOI: 10.1099/ijsem.0.000405

NOTES: Spirosomaceae, a New Family to Contain the Genera Spirosoma Migula 1894, Flectobacillus Larkin et al. 1977, and Runella Larkin and Williams 1978
journal, October 1978

  • Larkin, J. M.; Borrall, R.
  • International Journal of Systematic Bacteriology, Vol. 28, Issue 4
  • DOI: 10.1099/00207713-28-4-595

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
journal, January 2014


Chryseobacterium polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Chryseobacterium
journal, December 2014


Petrimonas sulfuriphila gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir
journal, May 2005

  • Grabowski, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 3
  • DOI: 10.1099/ijs.0.63426-0

Biochemical and Molecular Characterization of Carotenogenic Flavobacterial Isolates from Marine Waters
journal, January 2016


Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum
journal, May 2005

  • Vanparys, B.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 3
  • DOI: 10.1099/ijs.0.63635-0

Victivallis vadensis gen. nov., sp. nov., a sugar-fermenting anaerobe from human faeces
journal, January 2003

  • Zoetendal, E. G.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 53, Issue 1
  • DOI: 10.1099/ijs.0.02362-0

Belliella pelovolcani sp. nov., isolated from a mud-volcano in Taiwan
journal, July 2009

  • Arun, A. B.; Young, C. -C.; Chen, W. -M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 10
  • DOI: 10.1099/ijs.0.009753-0

Flavobacterium anatoliense sp. nov., isolated from fresh water, and emended description of Flavobacterium ceti
journal, October 2012

  • Kacagan, M.; Inan, K.; Belduz, A. O.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 6
  • DOI: 10.1099/ijs.0.040394-0

Chryseolinea serpens gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil
journal, April 2012

  • Kim, J. -J.; Alkawally, M.; Brady, A. L.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
  • DOI: 10.1099/ijs.0.039404-0

Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome
journal, May 2007

  • Bae, S. S.; Kwon, K. K.; Yang, S. H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 5
  • DOI: 10.1099/ijs.0.64565-0

Mangrovibacterium diazotrophicum gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov.
journal, November 2013

  • Huang, X. -F.; Liu, Y. J.; Dong, J. -D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 3
  • DOI: 10.1099/ijs.0.052779-0

Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment
journal, November 2001

  • Bruns, A.; Rohde, M.; Berthe-Corti, L.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 51, Issue 6
  • DOI: 10.1099/00207713-51-6-1997

Bizionia paragorgiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the soft coral Paragorgia arborea
journal, January 2005

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 1
  • DOI: 10.1099/ijs.0.63381-0

Myroides indicus sp. nov., isolated from garden soil
journal, November 2015

  • Ram, Hari; Kumar, Alok; Thomas, Lebin
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 11
  • DOI: 10.1099/ijsem.0.000530

Chryseobacterium taichungense sp. nov., isolated from contaminated soil
journal, May 2005

  • Shen, F. -T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 3
  • DOI: 10.1099/ijs.0.63514-0

Thermus oshimai sp. nov., Isolated from Hot Springs in Portugal, Iceland, and the Azores, and Comment on the Concept of a Limited Geographical Distribution of Thermus Species
journal, April 1996

  • Williams, R. A. D.; Smith, K. E.; Welch, S. G.
  • International Journal of Systematic Bacteriology, Vol. 46, Issue 2
  • DOI: 10.1099/00207713-46-2-403

Chitinophaga dinghuensis sp. nov., isolated from soil
journal, December 2015

  • Lv, Ying-ying; You, Jia; Wang, Jia
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 12
  • DOI: 10.1099/ijsem.0.000653

Bacteroides caecicola sp. nov. and Bacteroides gallinaceum sp. nov., isolated from the caecum of an Indonesian chicken
journal, March 2016

  • Irisawa, Tomohiro; Saputra, Sugiyono; Kitahara, Maki
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 3
  • DOI: 10.1099/ijsem.0.000899

Reclassification of Bacteroides microfusus (Kaneuchi and Mitsuoka) in a New Genus Rikenella, as Rikenella microfusus comb. nov.
journal, June 1985

  • Collins, Matthew D.; Shah, Haroun N.; Mitsuoka, Tomotari
  • Systematic and Applied Microbiology, Vol. 6, Issue 1
  • DOI: 10.1016/S0723-2020(85)80015-1

Thermus filiformis sp. nov., a Filamentous Caldoactive Bacterium
journal, October 1987

  • Hudson, J. A.; Morgan, H. W.; Daniel, R. M.
  • International Journal of Systematic Bacteriology, Vol. 37, Issue 4
  • DOI: 10.1099/00207713-37-4-431

The pigments of Flexibacter elegans: Novel and chemosystematically useful compounds
journal, January 1974

  • Reichenbach, Hans; Kleinig, Hans; Achenbach, Hans
  • Archives of Microbiology, Vol. 101, Issue 1
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Aureitalea marina gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater
journal, June 2011

  • Park, S.; Yoshizawa, S.; Inomata, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 4
  • DOI: 10.1099/ijs.0.031450-0

Lutibacter maritimus sp. nov., isolated from a tidal flat sediment
journal, August 2009

  • Park, S.; Kang, S. -J.; Oh, T. -K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 3
  • DOI: 10.1099/ijs.0.012401-0

Muricauda pacifica sp. nov., isolated from seawater of the South Pacific Gyre
journal, November 2015

  • Zhang, Zenghu; Gao, Xin; Qiao, Yanlu
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 11
  • DOI: 10.1099/ijsem.0.000542

Highly parallelized inference of large genome-based phylogenies: GENOME-BASED PHYLOGENIES
journal, August 2013

  • Meier-Kolthoff, Jan P.; Auch, Alexander F.; Klenk, Hans-Peter
  • Concurrency and Computation: Practice and Experience, Vol. 26, Issue 10
  • DOI: 10.1002/cpe.3112

Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes
journal, November 2015

  • Oren, Aharon; da Costa, Milton S.; Garrity, George M.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 11
  • DOI: 10.1099/ijsem.0.000664

Initiation of the flexirubin biosynthesis in C hitinophaga pinensis : Flexirubin biosynthesis
journal, January 2014

  • Schöner, Tim A.; Fuchs, Sebastian W.; Schönau, Christian
  • Microbial Biotechnology, Vol. 7, Issue 3
  • DOI: 10.1111/1751-7915.12110

Formal Definitions of Paraphyly and Polyphyly
journal, December 1974

  • Farris, James S.
  • Systematic Zoology, Vol. 23, Issue 4
  • DOI: 10.2307/2412474

Myroides xuanwuensis sp. nov., a mineral-weathering bacterium isolated from forest soil
journal, October 2013

  • Zhang, Z. -D.; He, L. -Y.; Huang, Z.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.056739-0

Algoriphagus taeanensis sp. nov., isolated from a tidal flat, and emended description of Algoriphagus hitonicola
journal, September 2013

  • Kim, H.; Joung, Y.; Joh, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 1
  • DOI: 10.1099/ijs.0.055434-0

Description of Gabonibacter massiliensis gen. nov., sp. nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota
journal, September 2016

  • Mourembou, Gaël; Rathored, Jaishriram; Lekana-Douki, Jean Bernard
  • Current Microbiology, Vol. 73, Issue 6
  • DOI: 10.1007/s00284-016-1137-2

Ekhidna lutea gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from the South East Pacific Ocean
journal, January 2010

  • Alain, K.; Tindall, B. J.; Catala, P.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 12
  • DOI: 10.1099/ijs.0.018804-0

Flavobacterium noncentrifugens sp. nov., a psychrotolerant bacterium isolated from glacier meltwater
journal, October 2012

  • Zhu, L.; Liu, Q.; Liu, H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 6
  • DOI: 10.1099/ijs.0.045534-0

Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium isolated from the China No.1 glacier
journal, December 2006

  • Zhang, D. -C.; Wang, H. -X.; Liu, H. -C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 12
  • DOI: 10.1099/ijs.0.64564-0

Flavobacterium akiainvivens sp. nov., from decaying wood of Wikstroemia oahuensis, Hawai'i, and emended description of the genus Flavobacterium
journal, March 2013

  • Kuo, I.; Saw, J.; Kapan, D. D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 9
  • DOI: 10.1099/ijs.0.047217-0

Zhouia amylolytica gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from sediment of the South China Sea
journal, December 2006

  • Liu, Z. -P.; Wang, B. -J.; Dai, X.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 12
  • DOI: 10.1099/ijs.0.64587-0

Gracilimonas mengyeensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-western China
journal, May 2013

  • Wang, Y. -X.; Li, Y. -P.; Liu, J. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 11
  • DOI: 10.1099/ijs.0.052043-0

Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia
journal, March 2010

  • Yoon, B. -J.; Oh, D. -C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 2
  • DOI: 10.1099/ijs.0.023499-0

Isolation of aerobic, gliding, xylanolytic and laminarinolytic bacteria from acidic Sphagnum peatlands and emended description of Chitinophaga arvensicola Kampfer et al. 2006
journal, December 2006

  • Pankratov, T. A.; Kulichevskaya, I. S.; Liesack, W.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 12
  • DOI: 10.1099/ijs.0.64451-0

Spirosoma fluviale sp. nov., isolated from river water
journal, October 2015

  • Hatayama, Kouta; Kuno, Teruaki
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 10
  • DOI: 10.1099/ijsem.0.000433

Saccharicrinis marinus sp. nov., isolated from marine sediment
journal, October 2015

  • Chen, Guan-Jun; Li, Juan; Lu, Jin-Xing
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 10
  • DOI: 10.1099/ijsem.0.000436

Chryseobacterium zeae sp. nov., Chryseobacterium arachidis sp. nov., and Chryseobacterium geocarposphaerae sp. nov. isolated from the rhizosphere environment
journal, December 2013

  • Kämpfer, Peter; McInroy, John A.; Glaeser, Stefanie P.
  • Antonie van Leeuwenhoek, Vol. 105, Issue 3
  • DOI: 10.1007/s10482-013-0101-4

Kaistella koreensis gen. nov., sp. nov., a novel member of the Chryseobacterium-Bergeyella-Riemerella branch
journal, November 2004

  • Kim, M. K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 6
  • DOI: 10.1099/ijs.0.02998-0

Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations
journal, June 2010


Nubsella zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Sphingobacteriaceae isolated from freshwater
journal, March 2008

  • Asker, D.; Beppu, T.; Ueda, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 3
  • DOI: 10.1099/ijs.0.65493-0

Marinifilum flexuosum sp. nov., a new Bacteroidetes isolated from coastal Mediterranean Sea water and emended description of the genus Marinifilum Na et al., 2009
journal, May 2013

  • Ruvira, María A.; Lucena, Teresa; Pujalte, María J.
  • Systematic and Applied Microbiology, Vol. 36, Issue 3
  • DOI: 10.1016/j.syapm.2012.12.003

Chryseobacterium treverense sp. nov., isolated from a human clinical source
journal, October 2009

  • Yassin, A. F.; Hupfer, H.; Siering, C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 9
  • DOI: 10.1099/ijs.0.017327-0

Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri
journal, July 2012

  • Yu, T.; Yin, Q.; Song, X.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 4
  • DOI: 10.1099/ijs.0.041509-0

Nonlabens antarcticus sp. nov., a psychrophilic bacterium isolated from glacier ice, and emended descriptions of Nonlabens marinus Park et al. 2012 and Nonlabens agnitus Yi and Chun 2012
journal, September 2013

  • Kwon, Y. M.; Yang, S. -H.; Kwon, K. K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.056606-0

Chitinophaga eiseniae sp. nov., isolated from vermicompost
journal, November 2010

  • Yasir, M.; Chung, E. J.; Song, G. C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 10
  • DOI: 10.1099/ijs.0.023028-0

Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex
journal, February 2016


Phylogenetic Analysis of Members of the Genus Porphyromonas and Description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov.
journal, October 1994

  • Collins, M. D.; Love, D. N.; Karjalainen, J.
  • International Journal of Systematic Bacteriology, Vol. 44, Issue 4
  • DOI: 10.1099/00207713-44-4-674

Flavobacterium chilense sp. nov. and Flavobacterium araucananum sp. nov., isolated from farmed salmonid fish
journal, August 2011

  • Kampfer, P.; Lodders, N.; Martin, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 6
  • DOI: 10.1099/ijs.0.033431-0

Belliella buryatensis sp. nov., isolated from alkaline lake water
journal, January 2016

  • Plotnikova, Elena; Anan'ina, Lyudmila; Egorova, Darya
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 1
  • DOI: 10.1099/ijsem.0.000682

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
journal, September 2003


Ohtaekwangia koreensis gen. nov., sp. nov. and Ohtaekwangia kribbensis sp. nov., isolated from marine sand, deep-branching members of the phylum Bacteroidetes
journal, May 2010

  • Yoon, J. -H.; Kang, S. -J.; Lee, S. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 5
  • DOI: 10.1099/ijs.0.025874-0

Proposal To Restrict the Genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and Closely Related Species
journal, January 1989

  • Shah, H. N.; Collins, M. D.
  • International Journal of Systematic Bacteriology, Vol. 39, Issue 1
  • DOI: 10.1099/00207713-39-1-85

Balneicella halophila gen. nov., sp. nov., an anaerobic bacterium, isolated from a thermal spring and description of Balneicellaceae fam. nov.
journal, November 2016

  • Fadhlaoui, Khaled; Ben Hania, Wajdi; Postec, Anne
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 11
  • DOI: 10.1099/ijsem.0.001412

Proposal of Chlamydia Pecorum sp. nov. for Chlamydia Strains Derived from Ruminants
journal, April 1992


opm: an R package for analysing OmniLog(R) phenotype microarray data
journal, June 2013


Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)
journal, June 2008

  • Gonzalez, J. M.; Fernandez-Gomez, B.; Fernandez-Guerra, A.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 25
  • DOI: 10.1073/pnas.0712027105

Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics
journal, October 1987

  • Moore, W. E. C.; Stackebrandt, E.; Kandler, O.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 37, Issue 4
  • DOI: 10.1099/00207713-37-4-463

Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov.
journal, July 2016

  • Munoz, Raul; Rosselló-Móra, Ramon; Amann, Rudolf
  • Systematic and Applied Microbiology, Vol. 39, Issue 5
  • DOI: 10.1016/j.syapm.2016.04.004

Bacteroides caccae sp. nov., Bacteroides merdae sp. nov., and Bacteroides stercoris sp. nov. Isolated from Human Feces
journal, October 1986

  • Johnson, J. L.; Moore, W. E. C.; Moore, L. V. H.
  • International Journal of Systematic Bacteriology, Vol. 36, Issue 4
  • DOI: 10.1099/00207713-36-4-499

Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil
journal, October 2009

  • Wang, W.; Mao, J.; Zhang, Z.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 9
  • DOI: 10.1099/ijs.0.015917-0

Bacteroides caecigallinarum sp. nov., isolated from caecum of an Indonesian chicken
journal, December 2015

  • Ohkuma, Moriya; Saputra, Sugiyono
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 12
  • DOI: 10.1099/ijsem.0.000573

Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces
journal, September 2005

  • Kitahara, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 5
  • DOI: 10.1099/ijs.0.63788-0

Robertkochia marina gen. nov., sp. nov., of the family Flavobacteriaceae, isolated from surface seawater, and emended descriptions of the genera Joostella and Galbibacter
journal, October 2013

  • Hameed, A.; Shahina, M.; Lin, S. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.054627-0

Bacteria that Glide with Helical Tracks
journal, February 2014


Flavobacterium gliding motility and the type IX secretion system
journal, December 2015


Tangfeifania diversioriginum gen. nov., sp. nov., a representative of the family Draconibacteriaceae
journal, July 2014

  • Liu, Q. -Q.; Li, X. -L.; Rooney, A. P.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 10
  • DOI: 10.1099/ijs.0.066902-0

Dyadobacter koreensis sp. nov., isolated from fresh water
journal, June 2007

  • Baik, K. S.; Kim, M. S.; Kim, E. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 6
  • DOI: 10.1099/ijs.0.64902-0

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
journal, May 2019


Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata
journal, January 2004

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 1
  • DOI: 10.1099/ijs.0.02757-0

Sediminibacterium salmoneum gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment of a eutrophic reservoir
journal, September 2008

  • Qu, J. -H.; Yuan, H. -L.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 9
  • DOI: 10.1099/ijs.0.65514-0

Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae
journal, May 2018


Olleya namhaensis sp. nov., isolated from wood falls, and emended description of the genus Olleya Mancuso Nichols et al. 2005 emend. Lee et al. 2010
journal, August 2012

  • Lee, M. -H.; Jung, Y. -T.; Park, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 5
  • DOI: 10.1099/ijs.0.044131-0

Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga
journal, September 2005

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 5
  • DOI: 10.1099/ijs.0.63621-0

Winogradskyella ulvae sp. nov., an epiphyte of a Pacific seaweed, and emended descriptions of the genus Winogradskyella and Winogradskyella thalassocola, Winogradskyella echinorum, Winogradskyella exilis and Winogradskyella eximia
journal, August 2011

  • Nedashkovskaya, O. I.; Kukhlevskiy, A. D.; Zhukova, N. V.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 7
  • DOI: 10.1099/ijs.0.032219-0

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
journal, October 2018

  • Chen, I-Min A.; Chu, Ken; Palaniappan, Krishna
  • Nucleic Acids Research, Vol. 47, Issue D1
  • DOI: 10.1093/nar/gky901

Formosa agariphila sp. nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa
journal, January 2006

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 1
  • DOI: 10.1099/ijs.0.63875-0

Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root, and emended description of Chryseobacterium arthrosphaerae
journal, March 2017

  • Jeong, Jin-Ju; Lee, Dong Wan; Park, Byeonghyeok
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 3
  • DOI: 10.1099/ijsem.0.001670

Flavobacterium aciduliphilum sp. nov., isolated from freshwater, and emended description of the genus Flavobacterium
journal, August 2012

  • Kang, J. Y.; Chun, J.; Jahng, K. Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 5
  • DOI: 10.1099/ijs.0.044495-0

Mesoflavibacter zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae
journal, June 2007


En route to a genome-based classification of Archaea and Bacteria?
journal, June 2010


An alternative polysaccharide uptake mechanism of marine bacteria
journal, March 2017

  • Reintjes, Greta; Arnosti, Carol; Fuchs, Bernhard M.
  • The ISME Journal, Vol. 11, Issue 7
  • DOI: 10.1038/ismej.2017.26

New Genus, Coprococcus, Twelve New Species, and Emended Descriptions of Four Previously Described Species of Bacteria from Human Feces
journal, April 1974

  • Holdeman, L. V.; Moore, W. E. C.
  • International Journal of Systematic Bacteriology, Vol. 24, Issue 2
  • DOI: 10.1099/00207713-24-2-260

Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil
journal, July 2007

  • Weon, H. -Y.; Song, M. -H.; Son, J. -A
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 7
  • DOI: 10.1099/ijs.0.64935-0

An Assessment of Accuracy, Error, and Conflict with Support Values from Genome-Scale Phylogenetic Data
journal, February 2004


Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes
journal, July 2009

  • Vaisman, N.; Oren, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 10
  • DOI: 10.1099/ijs.0.010892-0

Maribacter chungangensis sp. nov., isolated from a green seaweed, and emended descriptions of the genus Maribacter and Maribacter arcticus
journal, December 2012

  • Weerawongwiwat, V.; Kang, H.; Jung, M. Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 7
  • DOI: 10.1099/ijs.0.039628-0

Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater
journal, November 2005

  • Chen, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 6
  • DOI: 10.1099/ijs.0.63807-0

Hymenobacter sedentarius sp. nov., isolated from a soil
journal, April 2016


Description of Olleya aquimaris sp. nov., isolated from seawater, and emended description of the genus Olleya Mancuso Nichols et al. 2005
journal, August 2009

  • Lee, S. Y.; Park, S.; Oh, T. K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 4
  • DOI: 10.1099/ijs.0.014563-0

Flavobacterium spartansii sp. nov., a pathogen of fishes, and emended descriptions of Flavobacterium aquidurense and Flavobacterium araucananum
journal, October 2013

  • Loch, T. P.; Faisal, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.051433-0

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
journal, June 2017

  • Mukherjee, Supratim; Seshadri, Rekha; Varghese, Neha J.
  • Nature Biotechnology, Vol. 35, Issue 7
  • DOI: 10.1038/nbt.3886

Flavobacterium tructae sp. nov. and Flavobacterium piscis sp. nov., isolated from farmed rainbow trout (Oncorhynchus mykiss)
journal, September 2013

  • Zamora, L.; Vela, A. I.; Sanchez-Porro, C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.056341-0

Oceanithermus profundus gen. nov., sp. nov., a thermophilic, microaerophilic, facultatively chemolithoheterotrophic bacterium from a deep-sea hydrothermal vent
journal, May 2003

  • Miroshnichenko, M. L.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 53, Issue 3
  • DOI: 10.1099/ijs.0.02367-0

Flavobacterium cloacae sp. nov., isolated from waste water
journal, March 2017

  • Liu, Hongming; Lu, Peng; Zhu, Guoping
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 3
  • DOI: 10.1099/ijsem.0.001684

Prosthecobacter fusiformis gen. and sp. nov., nom. rev.
journal, July 1980

  • Staley, J. T.; de BONT, J. A. M.; de JONGE, K.
  • International Journal of Systematic Bacteriology, Vol. 30, Issue 3
  • DOI: 10.1099/00207713-30-3-595

Dyadobacter tibetensis sp. nov., isolated from glacial ice core
journal, April 2013

  • Shen, L.; Liu, Y.; Yao, T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 10
  • DOI: 10.1099/ijs.0.050328-0

Oceanihabitans sediminis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the Yellow Sea
journal, September 2016

  • Zhang, De-Chao; Liu, Yan-Xia; Huang, Hai-Jun
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 9
  • DOI: 10.1099/ijsem.0.001208

Flavisolibacter tropicus sp. nov., isolated from tropical soil
journal, September 2016

  • Lee, Jae-Jin; Kang, Myung-Suk; Kim, Gyung Soon
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 9
  • DOI: 10.1099/ijsem.0.001207

Sinomicrobium oceani gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment
journal, June 2012

  • Xu, Y.; Tian, X. -P.; Liu, Y. -J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 3
  • DOI: 10.1099/ijs.0.041889-0

Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria.
journal, February 1994


Deinococcus gobiensis sp. nov., an extremely radiation-resistant bacterium
journal, June 2009

  • Yuan, M.; Zhang, W.; Dai, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 6
  • DOI: 10.1099/ijs.0.004523-0

Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios
journal, November 2010

  • Moreira, A. P. B.; Pereira, N.; Thompson, F. L.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 10
  • DOI: 10.1099/ijs.0.023606-0

Maribacter aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Maribacter
journal, March 2013

  • Lo, N.; Jin, H. M.; Jeon, C. O.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 9
  • DOI: 10.1099/ijs.0.050054-0

Verrucomicrobium spinosum gen. nov., sp. nov.: a Fimbriated Prosthecate Bacterium
journal, November 1987


Cyclobacterium sediminis sp. nov. isolated from a sea cucumber aquaculture farm and emended description of the genus Cyclobacterium
journal, January 2017


Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010


Pedobacter nutrimenti sp. nov., isolated from chilled food
journal, January 2014

  • Derichs, J.; Kampfer, P.; Lipski, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 4
  • DOI: 10.1099/ijs.0.058677-0

Pedobacter duraquae sp. nov., Pedobacter westerhofensis sp. nov., Pedobacter metabolipauper sp. nov., Pedobacter hartonius sp. nov. and Pedobacter steynii sp. nov., isolated from a hard-water rivulet
journal, October 2007

  • Muurholm, S.; Cousin, S.; Pauker, O.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 10
  • DOI: 10.1099/ijs.0.65166-0

Myroides marinus sp. nov., a member of the family Flavobacteriaceae, isolated from seawater
journal, May 2010

  • Cho, S. -H.; Chae, S. -H.; Im, W. -T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 4
  • DOI: 10.1099/ijs.0.024067-0

Marinoscillum gen. nov., a member of the family 'Flexibacteraceae', with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov.
journal, April 2009

  • Seo, H. -S.; Kwon, K. K.; Yang, S. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 5
  • DOI: 10.1099/ijs.0.004317-0

Myroides phaeus sp. nov., isolated from human saliva, and emended descriptions of the genus Myroides and the species Myroides profundi Zhang et al. 2009 and Myroides marinus Cho et al. 2011
journal, May 2011

  • Yan, S.; Zhao, N.; Zhang, X. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 4
  • DOI: 10.1099/ijs.0.029215-0

Alignment-Free Genome Tree Inference by Learning Group-Specific Distance Metrics
journal, July 2013

  • Patil, Kaustubh R.; McHardy, Alice C.
  • Genome Biology and Evolution, Vol. 5, Issue 8
  • DOI: 10.1093/gbe/evt105

Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants
journal, January 2008

  • Herzog, P.; Winkler, I.; Wolking, D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 1
  • DOI: 10.1099/ijs.0.65362-0

Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes: Xylan degradation by gut Bacteroidetes
journal, December 2010


Acetobacteroides hydrogenigenes gen. nov., sp. nov., an anaerobic hydrogen-producing bacterium in the family Rikenellaceae isolated from a reed swamp
journal, June 2014

  • Su, X. -L.; Tian, Q.; Zhang, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 9
  • DOI: 10.1099/ijs.0.063917-0

International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Gram-negative anaerobic rods: Minutes of the meetings, 9 and 10 July 2000, Manchester, UK
journal, September 2001

  • Olsen, I.; Shah, H. N.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 51, Issue 5
  • DOI: 10.1099/00207713-51-5-1943

Dysgonomonas hofstadii sp. nov., isolated from a human clinical source
journal, April 2010


Pedobacter rhizosphaerae sp. nov. and Pedobacter soli sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris)
journal, January 2011

  • Kwon, S. -W.; Son, J. -A.; Kim, S. -J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 12
  • DOI: 10.1099/ijs.0.026781-0

Flavobacterium cutihirudinis sp. nov., isolated from the skin of the medical leech Hirudo verbana
journal, January 2013

  • Glaeser, S. P.; Galatis, H.; Martin, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 8
  • DOI: 10.1099/ijs.0.048736-0

Reichenbachiella faecimaris sp. nov., isolated from a tidal flat, and emended descriptions of the genus Reichenbachiella and Reichenbachiella agariperforans
journal, September 2010

  • Cha, I. -T.; Oh, Y. -S.; Park, S. -J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 8
  • DOI: 10.1099/ijs.0.026849-0

Sediminibacterium ginsengisoli sp. nov., isolated from soil of a ginseng field, and emended descriptions of the genus Sediminibacterium and of Sediminibacterium salmoneum
journal, May 2012

  • Kim, Y. -J.; Nguyen, N. -L.; Weon, H. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 3
  • DOI: 10.1099/ijs.0.038554-0

Olivibacter sitiensis gen. nov., sp. nov., isolated from alkaline olive-oil mill wastes in the region of Sitia, Crete
journal, February 2007

  • Ntougias, S.; Fasseas, C.; Zervakis, G. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 2
  • DOI: 10.1099/ijs.0.64561-0

NOTES: New Perspectives in the Classification of the Flavobacteria: Description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev.
journal, October 1994

  • Vandamme, P.; Bernardet, J. -F.; Segers, P.
  • International Journal of Systematic Bacteriology, Vol. 44, Issue 4
  • DOI: 10.1099/00207713-44-4-827

Deinococcus phoenicis sp. nov., an extreme ionizing-radiation-resistant bacterium isolated from the Phoenix Lander assembly facility
journal, July 2014

  • Vaishampayan, P.; Roberts, A. H.; Augustus, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 10
  • DOI: 10.1099/ijs.0.063107-0

Halotolerant Thermus Strains from Marine and Terrestrial Hot Springs Belong to Thermus thermophilus (ex Oshima and Imahori, 1974) nom. rev. emend.
journal, February 1995


Maripseudobacter aurantiacus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a sedimentation basin
journal, April 2017

  • Chen, Can; Su, Yue; Tao, Tianyi
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 4
  • DOI: 10.1099/ijsem.0.001580

Diversity of Capnocytophaga species in children and description of Capnocytophaga leadbetteri sp. nov. and Capnocytophaga genospecies AHN8471
journal, February 2008

  • Frandsen, E. V. G.; Poulsen, K.; Kononen, E.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 2
  • DOI: 10.1099/ijs.0.65373-0

Mucilaginibacter polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Mucilaginibacter
journal, January 2014

  • Chen, X. Y.; Zhao, R.; Tian, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 4
  • DOI: 10.1099/ijs.0.055335-0

Lentimicrobium saccharophilum gen. nov., sp. nov., a strictly anaerobic bacterium representing a new family in the phylum Bacteroidetes, and proposal of Lentimicrobiaceae fam. nov.
journal, July 2016

  • Sun, Liwei; Toyonaga, Mayu; Ohashi, Akiko
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 7
  • DOI: 10.1099/ijsem.0.001103

Algoriphagus aquaeductus sp. nov., isolated from a freshwater pipe
journal, May 2011

  • Rau, J. E.; Blotevogel, K. -H.; Fischer, U.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 3
  • DOI: 10.1099/ijs.0.030809-0

Chryseobacterium piscicola sp. nov., isolated from diseased salmonid fish
journal, July 2009

  • Ilardi, P.; Fernandez, J.; Avendano-Herrera, R.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 12
  • DOI: 10.1099/ijs.0.007021-0

Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals
journal, July 2016


Pseudarcicella hirudinis gen. nov., sp. nov., isolated from the skin of the medical leech Hirudo medicinalis
journal, November 2011

  • Kampfer, P.; Busse, H. -J.; Longaric, I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 9
  • DOI: 10.1099/ijs.0.037390-0

The Phylogeny of the Genus Clostridium: Proposal of Five New Genera and Eleven New Species Combinations
journal, October 1994

  • Collins, M. D.; Lawson, P. A.; Willems, A.
  • International Journal of Systematic Bacteriology, Vol. 44, Issue 4
  • DOI: 10.1099/00207713-44-4-812

Flavobacterium jumunjinense sp. nov., isolated from a lagoon, and emended descriptions of Flavobacterium cheniae, Flavobacterium dongtanense and Flavobacterium gelidilacus
journal, May 2013

  • Joung, Y.; Kim, H.; Joh, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 11
  • DOI: 10.1099/ijs.0.045286-0

Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter
journal, September 2007

  • Nedashkovskaya, O. I.; Vancanneyt, M.; Kim, S. B.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 9
  • DOI: 10.1099/ijs.0.65165-0

An efficient algorithm for large-scale detection of protein families
journal, April 2002


TNT, a free program for phylogenetic analysis
journal, October 2008


Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
journal, December 2017

  • Montero-Calasanz, Maria del Carmen; Meier-Kolthoff, Jan P.; Zhang, Dao-Feng
  • Frontiers in Microbiology, Vol. 8
  • DOI: 10.3389/fmicb.2017.02501

Monophyly and Comparisons Between Trees
journal, December 1994


Emended descriptions of the genus Lewinella and of Lewinella cohaerens, Lewinella nigricans and Lewinella persica, and description of Lewinella lutea sp. nov. and Lewinella marina sp. nov.
journal, December 2007

  • Khan, S. T.; Fukunaga, Y.; Nakagawa, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 12
  • DOI: 10.1099/ijs.0.65308-0

Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae
journal, October 2011

  • Kim, J. -J.; Kanaya, E.; Weon, H. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 8
  • DOI: 10.1099/ijs.0.032920-0

Parasegetibacter terrae sp. nov., isolated from paddy soil and emended description of the genus Parasegetibacter
journal, October 2014

  • Kim, S. -J.; Ahn, J. -H.; Weon, H. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 65, Issue Pt 1
  • DOI: 10.1099/ijs.0.068692-0

Olleya marilimosa gen. nov., sp. nov., an exopolysaccharide-producing marine bacterium from the family Flavobacteriaceae, isolated from the Southern Ocean
journal, July 2005

  • Nichols, C. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 4
  • DOI: 10.1099/ijs.0.63642-0

Deinococcus mumbaiensis Shashidhar and Bandekar 2006 is a later heterotypic synonym of Deinococcus ficus Lai et al. 2006
journal, February 2009

  • Kampfer, P.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 2
  • DOI: 10.1099/ijs.0.002824-0

Schleiferia thermophila gen. nov., sp. nov., a slightly thermophilic bacterium of the phylum 'Bacteroidetes' and the proposal of Schleiferiaceae fam. nov.
journal, November 2010

  • Albuquerque, L.; Rainey, F. A.; Nobre, M. F.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 10
  • DOI: 10.1099/ijs.0.028852-0

Lutibacter agarilyticus sp. nov., a marine bacterium isolated from shallow coastal seawater
journal, January 2013

  • Park, S. C.; Choe, H. N.; Hwang, Y. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 7
  • DOI: 10.1099/ijs.0.047670-0

Soonwooa purpurea sp. nov., isolated from a fresh water river
journal, December 2017

  • Sirra, Mercy Rose Stella; Padakandla, Shalem Raj; Chae, Jong-Chan
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 12
  • DOI: 10.1099/ijsem.0.002441

Dyadobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from soil
journal, August 2009

  • Zhang, D. -C.; Liu, H. -C.; Xin, Y. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 7
  • DOI: 10.1099/ijs.0.017236-0

Anaerophaga thermohalophila gen. nov., sp. nov., a moderately thermohalophilic, strictly anaerobic fermentative bacterium.
journal, January 2002

  • Denger, Karin; Ludwig, Wolfgang; Warthmann, Rolf
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 52, Issue 1
  • DOI: 10.1099/00207713-52-1-173

Bacteroides reticulotermitis sp. nov., isolated from the gut of a subterranean termite (Reticulitermes speratus)
journal, April 2012

  • Sakamoto, M.; Ohkuma, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
  • DOI: 10.1099/ijs.0.040931-0

Aequorivita capsosiphonis sp. nov., isolated from the green alga Capsosiphon fulvescens, and emended description of the genus Aequorivita
journal, April 2009

  • Park, S. C.; Baik, K. S.; Kim, M. S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 4
  • DOI: 10.1099/ijs.0.004119-0

Heliimonas saccharivorans gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a mineral water aquifer, and emended description of Filimonas lacunae
journal, May 2013

  • Leandro, T.; Franca, L.; Nobre, M. F.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 10
  • DOI: 10.1099/ijs.0.050021-0

Diversity and functional analysis of proteorhodopsin in marine Flavobacteria: Diversity and functional analysis of proteorhodopsin
journal, February 2012


Mucilaginibacter auburnensis sp. nov., isolated from a plant stem
journal, February 2014

  • Kampfer, P.; Busse, H. -J.; McInroy, J. A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 5
  • DOI: 10.1099/ijs.0.060848-0

Roseimaritima ulvae gen. nov., sp. nov. and Rubripirellula obstinata gen. nov., sp. nov. two novel planctomycetes isolated from the epiphytic community of macroalgae
journal, February 2015

  • Bondoso, Joana; Albuquerque, Luciana; Nobre, M. Fernanda
  • Systematic and Applied Microbiology, Vol. 38, Issue 1
  • DOI: 10.1016/j.syapm.2014.10.004

Pontibacter virosus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite
journal, November 2016

  • Kohli, Puneet; Nayyar, Namita; Sharma, Anukriti
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 11
  • DOI: 10.1099/ijsem.0.001363

Planobacterium taklimakanense gen. nov., sp. nov., a member of the family Flavobacteriaceae that exhibits swimming motility, isolated from desert soil
journal, June 2009

  • Peng, F.; Liu, M.; Zhang, L.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 7
  • DOI: 10.1099/ijs.0.006619-0

Isolates belonging to CDC group II-i belong predominantly to Sphingobacterium mizutaii Yabuuchi et al. 1983: emended descriptions of S. mizutaii and of the genus Sphingobacterium
journal, December 2011

  • Wauters, G.; Janssens, M.; De Baere, T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 11
  • DOI: 10.1099/ijs.0.037325-0

Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis
journal, August 2009

  • McBride, M. J.; Xie, G.; Martens, E. C.
  • Applied and Environmental Microbiology, Vol. 75, Issue 21
  • DOI: 10.1128/AEM.01495-09

Vitellibacter aquimaris sp. nov., a marine bacterium isolated from seawater
journal, September 2016

  • Thevarajoo, Suganthi; Selvaratnam, Chitra; Goh, Kian Mau
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 9
  • DOI: 10.1099/ijsem.0.001248

Mucilaginibacter frigoritolerans sp. nov., Mucilaginibacter lappiensis sp. nov. and Mucilaginibacter mallensis sp. nov., isolated from soil and lichen samples
journal, January 2010

  • Mannisto, M. K.; Tiirola, M.; McConnell, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 12
  • DOI: 10.1099/ijs.0.019364-0

Flavobacterium glycines sp. nov., a facultative methylotroph isolated from the rhizosphere of soybean
journal, November 2009

  • Madhaiyan, M.; Poonguzhali, S.; Lee, J. -S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 9
  • DOI: 10.1099/ijs.0.014019-0

Asinibacterium lactis gen. nov., sp. nov., a member of the family Chitinophagaceae, isolated from donkey (Equus asinus) milk
journal, February 2013

  • Lee, D. -G.; Park, J. -M.; Kang, H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 9
  • DOI: 10.1099/ijs.0.047639-0

Runella slithyformis gen. nov., sp. nov., a Curved, Nonflexible, Pink Bacterium
journal, January 1978

  • Larkin, J. M.; Williams, P. M.
  • International Journal of Systematic Bacteriology, Vol. 28, Issue 1
  • DOI: 10.1099/00207713-28-1-32

Capnocytophaga: New genus of gram-negative gliding bacteria I. General characteristics, taxonomic considerations and significance
journal, January 1979

  • Leadbetter, E. R.; Holt, S. C.; Socransky, S. S.
  • Archives of Microbiology, Vol. 122, Issue 1
  • DOI: 10.1007/BF00408040

Flavobacterium tilapiae sp. nov., isolated from a freshwater pond, and emended descriptions of Flavobacterium defluvii and Flavobacterium johnsoniae
journal, May 2012

  • Chen, W. -M.; Huang, W. -C.; Young, C. -C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 3
  • DOI: 10.1099/ijs.0.041178-0

Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater
journal, October 2009

  • Joung, Y.; Song, J.; Lee, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 9
  • DOI: 10.1099/ijs.0.017707-0

Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas
journal, June 2014

  • Sakamoto, M.; Tanaka, Y.; Benno, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 9
  • DOI: 10.1099/ijs.0.065318-0

Description of Lacinutrix venerupis sp. nov.: A novel bacterium associated with reared clams
journal, March 2015

  • Lasa, Aide; Diéguez, Ana L.; Romalde, Jesús L.
  • Systematic and Applied Microbiology, Vol. 38, Issue 2
  • DOI: 10.1016/j.syapm.2014.10.012

Flavobacterium ceti sp. nov., isolated from beaked whales (Ziphius cavirostris)
journal, November 2007

  • Vela, A. I.; Fernandez, A.; Sanchez-Porro, C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 11
  • DOI: 10.1099/ijs.0.65154-0

Geofilum rhodophaeum sp. nov., isolated from coastal sediment
journal, October 2017

  • Mu, Xin; Xu, Zhen-Xing; Mu, Da-Shuai
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 10
  • DOI: 10.1099/ijsem.0.002223

Prevotella colorans sp. nov., isolated from a human wound
journal, August 2016

  • Buhl, Michael; Willmann, Matthias; Liese, Jan
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 8
  • DOI: 10.1099/ijsem.0.001134

Evidence of Selection upon Genomic GC-Content in Bacteria
journal, September 2010


Parafilimonas terrae gen. nov., sp. nov., isolated from greenhouse soil
journal, June 2014

  • Kim, S. -J.; Park, J. -H.; Lim, J. -M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 9
  • DOI: 10.1099/ijs.0.061945-0

Flavobacterium commune sp. nov., isolated from freshwater and emended description of Flavobacterium seoulense
journal, January 2018

  • Ekwe, Adaeze Precious; Kim, Seung Bum
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 1
  • DOI: 10.1099/ijsem.0.002463

Phylogenomics: the beginning of incongruence?
journal, April 2006


Eating For Two: How Metabolism Establishes Interspecies Interactions in the Gut
journal, October 2011


Dysgonomonas macrotermitis sp. nov., isolated from the hindgut of a fungus-growing termite
journal, June 2014

  • Yang, Y. -j.; Zhang, N.; Ji, S. -q.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 9
  • DOI: 10.1099/ijs.0.061739-0

Reclassification of Flavobacterium odoratum (Stutzer 1929) Strains to a New Genus, Myroides, as Myroides odoratus comb. nov. and Myroides odoratimimus sp. nov.
journal, October 1996

  • Vancanneyt, M.; Segers, P.; Torck, U.
  • International Journal of Systematic Bacteriology, Vol. 46, Issue 4
  • DOI: 10.1099/00207713-46-4-926

Genome-Based Taxonomic Classification of the Phylum Actinobacteria
journal, August 2018


Genomic insights into the taxonomic status of the Bacillus cereus group
journal, September 2015

  • Liu, Yang; Lai, Qiliang; Göker, Markus
  • Scientific Reports, Vol. 5, Issue 1
  • DOI: 10.1038/srep14082

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
journal, July 2015

  • Hahnke, Richard L.; Stackebrandt, Erko; Meier-Kolthoff, Jan P.
  • Standards in Genomic Sciences, Vol. 10, Issue 1
  • DOI: 10.1186/s40793-015-0032-y

Arenitalea lutea gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from intertidal sand
journal, January 2013

  • Zhang, X. -Y.; Liu, A.; Liu, C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 8
  • DOI: 10.1099/ijs.0.049304-0

Bacteroides paurosaccharolyticus sp. nov., isolated from a methanogenic reactor treating waste from cattle farms
journal, March 2010

  • Ueki, A.; Abe, K.; Ohtaki, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 2
  • DOI: 10.1099/ijs.0.022566-0

Flavobacterium ummariense sp. nov., isolated from hexachlorocyclohexane-contaminated soil, and emended description of Flavobacterium ceti Vela et al. 2007
journal, December 2011

  • Lata, P.; Lal, D.; Lal, R.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 11
  • DOI: 10.1099/ijs.0.030916-0

Proposal of the suffix –ota to denote phyla. Addendum to ‘Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes’
journal, March 2018

  • Whitman, William B.; Oren, Aharon; Chuvochina, Maria
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 3
  • DOI: 10.1099/ijsem.0.002593

Chryseobacterium limigenitum sp. nov., isolated from dehydrated sludge
journal, March 2015


Cephaloticoccus gen. nov., a new genus of ‘Verrucomicrobia’ containing two novel species isolated from Cephalotes ant guts
journal, August 2016

  • Lin, Jonathan Y.; Russell, Jacob A.; Sanders, Jon G.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 8
  • DOI: 10.1099/ijsem.0.001141

Nonlabens arenilitoris sp. nov., a member of the family Flavobacteriaceae isolated from seashore sand
journal, February 2013


Chryseobacterium hungaricum sp. nov., isolated from hydrocarbon-contaminated soil
journal, December 2008

  • Szoboszlay, S.; Atzel, B.; Kukolya, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 12
  • DOI: 10.1099/ijs.0.65847-0

Rhodothermus profundi sp. nov., a thermophilic bacterium isolated from a deep-sea hydrothermal vent in the Pacific Ocean
journal, January 2010

  • Marteinsson, V. T.; Bjornsdottir, S. H.; Bienvenu, N.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 12
  • DOI: 10.1099/ijs.0.012724-0

Zunongwangia mangrovi sp. nov., isolated from mangrove (Avicennia marina) rhizosphere, and emended description of the genus Zunongwangia
journal, October 2013

  • Rameshkumar, N.; Krishnan, R.; Lang, E.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.053512-0

BLAST+: architecture and applications
journal, January 2009

  • Camacho, Christiam; Coulouris, George; Avagyan, Vahram
  • BMC Bioinformatics, Vol. 10, Issue 1
  • DOI: 10.1186/1471-2105-10-421

Maribacter stanieri sp. nov., a marine bacterium of the family Flavobacteriaceae
journal, July 2009

  • Nedashkovskaya, O. I.; Kim, S. B.; Mikhailov, V. V.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 1
  • DOI: 10.1099/ijs.0.012286-0

Chryseobacterium profundimaris sp. nov., a new member of the family Flavobacteriaceae isolated from deep-sea sediment
journal, January 2015


Confluentibacter citreus sp. nov., isolated from lake sediment, and emended description of the genus Confluentibacter
journal, October 2017

  • Han, Ji-Ru; Zhang, Hui; Zheng, Wei-Shuang
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 10
  • DOI: 10.1099/ijsem.0.002239

Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
journal, January 2014

  • Meier-Kolthoff, Jan P.; Hahnke, Richard L.; Petersen, Jörn
  • Standards in Genomic Sciences, Vol. 9, Issue 1
  • DOI: 10.1186/1944-3277-9-2

Pedobacter tournemirensis sp. nov., isolated from a fault water sample of a deep Toarcian argillite layer
journal, March 2012

  • Urios, L.; Intertaglia, L.; Magot, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 1
  • DOI: 10.1099/ijs.0.038968-0

Sphingobacterium gobiense sp. nov., isolated from soil of the Gobi Desert
journal, September 2014

  • Zhao, P.; Zhou, Z.; Chen, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 12
  • DOI: 10.1099/ijs.0.064246-0

Towards an integrated phylogenetic classification of the Tremellomycetes
journal, June 2015


Mucilaginibacter gossypii sp. nov. and Mucilaginibacter gossypiicola sp. nov., plant-growth-promoting bacteria isolated from cotton rhizosphere soils
journal, November 2009

  • Madhaiyan, M.; Poonguzhali, S.; Lee, J. -S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 10
  • DOI: 10.1099/ijs.0.018713-0

Bizionia echini sp. nov., isolated from a sea urchin
journal, August 2009

  • Nedashkovskaya, O. I.; Vancanneyt, M.; Kim, S. B.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 4
  • DOI: 10.1099/ijs.0.013193-0

Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum
journal, December 2006

  • Lan, P. T. N.; Sakamoto, M.; Sakata, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 12
  • DOI: 10.1099/ijs.0.64517-0

Winogradskyella sediminis sp. nov., isolated from marine sediment
journal, August 2016

  • Zhang, De-Chao; Liu, Yan-Xia; Huang, Hai-Jun
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 8
  • DOI: 10.1099/ijsem.0.001157

Phylogenetic Analysis Under Dollo's Law
journal, March 1977

  • Farris, James S.
  • Systematic Zoology, Vol. 26, Issue 1
  • DOI: 10.2307/2412867

Characterization of a New Marine Sedimentary Bacterium as Flavobacterium oceanosedimentum sp. nov.
journal, October 1978

  • Carty, C. E.; Litchfield, C. D.
  • International Journal of Systematic Bacteriology, Vol. 28, Issue 4
  • DOI: 10.1099/00207713-28-4-561

Meiothermus rufus sp. nov., a new slightly thermophilic red-pigmented species and emended description of the genus Meiothermus
journal, August 2009

  • Albuquerque, Luciana; Ferreira, Catarina; Tomaz, David
  • Systematic and Applied Microbiology, Vol. 32, Issue 5
  • DOI: 10.1016/j.syapm.2009.05.002

Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque
journal, February 2009

  • Sakamoto, M.; Kumada, H.; Hamada, N.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 2
  • DOI: 10.1099/ijs.0.002626-0

Description of Hymenobacter arizonensis sp. nov. from the southwestern arid lands of the United States of America
journal, September 2012


Elizabethkingia endophytica sp. nov., isolated from Zea mays and emended description of Elizabethkingia anophelis Kämpfer et al. 2011
journal, July 2015

  • Glaeser, Stefanie P.; Kämpfer, Peter; Busse, Hans-Jürgen
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7
  • DOI: 10.1099/ijs.0.000236

Bizionia arctica sp. nov., isolated from Arctic fjord seawater, and emended description of the genus Bizionia
journal, September 2015

  • Zhang, Yu-Zhong; Zhou, Bai-Cheng; Shi, Mei
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 9
  • DOI: 10.1099/ijs.0.000357

Chryseobacterium arachidiradicis sp. nov., isolated from the geocarposphere (soil around the peanut) of very immature peanuts (Arachis hypogaea)
journal, July 2015

  • Kämpfer, Peter; Glaeser, Stefanie P.; McInroy, John A.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7
  • DOI: 10.1099/ijs.0.000237

Bacteroides xylanolyticus sp. nov., a xylanolytic bacterium from methane producing cattle manure
journal, January 1986

  • Scholten-Koerselman, Ineke; Houwaard, Frank; Janssen, Paul
  • Antonie van Leeuwenhoek, Vol. 52, Issue 6
  • DOI: 10.1007/BF00423415

Phylogenetic Systematics
journal, January 1965


Parapedobacter luteus sp. nov. and Parapedobacter composti sp. nov., isolated from cotton waste compost
journal, September 2009

  • Kim, S. -J.; Weon, H. -Y.; Kim, Y. -S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 8
  • DOI: 10.1099/ijs.0.013318-0

Flavirhabdus iliipiscaria gen. nov., sp. nov., isolated from intestine of flounder (Paralichthys olivaceus) and emended descriptions of the genera Flavivirga, Algibacter, Bizionia and Formosa
journal, April 2015

  • Shehzad, Ahmed; Zhang, Xiao-Hua; Tang, Kaihao
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 4
  • DOI: 10.1099/ijs.0.000110

GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands
journal, February 2015


Winogradskyella jejuensis sp. nov., a marine bacterium isolated from a brown alga Carpopeltis affinis
journal, October 2012


FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.
journal, June 2015

  • Lefort, Vincent; Desper, Richard; Gascuel, Olivier
  • Molecular Biology and Evolution, Vol. 32, Issue 10
  • DOI: 10.1093/molbev/msv150

Ezakiella peruensis gen. nov., sp. nov. isolated from human fecal sample from a coastal traditional community in Peru
journal, April 2015


Rubrivirga marina gen. nov., sp. nov., a member of the family Rhodothermaceae isolated from deep seawater
journal, November 2012

  • Park, S.; Song, J.; Yoshizawa, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 6
  • DOI: 10.1099/ijs.0.046318-0

Tamlana agarivorans sp. nov., isolated from seawater off Jeju Island in Korea
journal, August 2008

  • Yoon, J. -H.; Kang, S. -J.; Lee, M. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 8
  • DOI: 10.1099/ijs.0.65704-0

Maribacter spongiicola sp. nov. and Maribacter vaceletii sp. nov., isolated from marine sponges, and emended description of the genus Maribacter
journal, July 2015

  • Morrissey, John P.; Dobson, Alan D. W.; Jackson, Stephen A.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7
  • DOI: 10.1099/ijs.0.000224

Chitinophaga jiangningensis sp. nov., a mineral-weathering bacterium
journal, September 2013

  • Wang, Q.; Cheng, C.; He, L. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 1
  • DOI: 10.1099/ijs.0.056721-0

Cecembia rubra sp. nov., a thermophilic bacterium isolated from a hot spring sediment
journal, July 2015

  • Dong, Lei; Li, Wen-Jun; Zhang, Jian-Xin
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7
  • DOI: 10.1099/ijs.0.000227

Flavobacterium longum sp. nov. and Flavobacterium urocaniciphilum sp. nov., isolated from a wastewater treatment plant, and emended descriptions of Flavobacterium caeni and Flavobacterium terrigena
journal, January 2014

  • Fujii, D.; Nagai, F.; Watanabe, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 5
  • DOI: 10.1099/ijs.0.054312-0

Whole-genome prokaryotic phylogeny
journal, May 2004


Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert
journal, November 2005

  • de Groot, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 6
  • DOI: 10.1099/ijs.0.63717-0

Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority
journal, July 2011

  • Sakamoto, M.; Ohkuma, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 6
  • DOI: 10.1099/ijs.0.035659-0

Pedobacter xixiisoli sp. nov., isolated from bank soil
journal, August 2014

  • Zeng, Y.; Feng, H.; Huang, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 11
  • DOI: 10.1099/ijs.0.065946-0

Flavobacterium aquicola sp. nov., isolated from river water
journal, August 2016

  • Hatayama, Kouta; Ushida, Ayako; Kuno, Teruaki
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 8
  • DOI: 10.1099/ijsem.0.001057

Deinococcus reticulitermitis sp. nov., isolated from a termite gut
journal, February 2011

  • Chen, W.; Wang, B.; Hong, H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue 1
  • DOI: 10.1099/ijs.0.026567-0

Spongiimonas flava gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from an unidentified marine sponge
journal, November 2012


Algoriella xinjiangensis gen. nov., sp. nov., a new psychrotolerant bacterium of the family Flavobacteriaceae
journal, August 2015


Chryseobacterium chaponense sp. nov., isolated from farmed Atlantic salmon (Salmo salar)
journal, April 2010

  • Kampfer, P.; Fallschissel, K.; Avendano-Herrera, R.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 3
  • DOI: 10.1099/ijs.0.022004-0

Saccharicrinis carchari sp. nov., isolated from a shark, and emended descriptions of the genus Saccharicrinis and Saccharicrinis fermentans
journal, April 2014

  • Liu, Q. -Q.; Wang, Y.; Li, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 7
  • DOI: 10.1099/ijs.0.061986-0

Pedobacter glucosidilyticus sp. nov., isolated from dry riverbed soil
journal, July 2009

  • Luo, X.; Wang, Z.; Dai, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 1
  • DOI: 10.1099/ijs.0.008060-0

Phocaeicola abscessus gen. nov., sp. nov., an anaerobic bacterium isolated from a human brain abscess sample
journal, July 2009

  • Al Masalma, M.; Raoult, D.; Roux, V.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 9
  • DOI: 10.1099/ijs.0.007823-0

Longibacter salinarum gen. nov., sp. nov., isolated from a marine solar saltern
journal, September 2016

  • Xia, Jun; Dunlap, Christopher A.; Flor-Weiler, Lina
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 9
  • DOI: 10.1099/ijsem.0.001190

Maribacter thermophilus sp. nov., isolated from an algal bloom in an intertidal zone, and emended description of the genus Maribacter
journal, September 2014

  • Hu, J.; Yang, Q. -Q.; Ren, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 65, Issue Pt 1
  • DOI: 10.1099/ijs.0.064774-0

Cesiribacter andamanensis gen. nov., sp. nov., isolated from a soil sample from a mud volcano
journal, July 2010

  • Srinivas, T. N. R.; Anil Kumar, P.; Madhu, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 7
  • DOI: 10.1099/ijs.0.025429-0

Deinococcus misasensis and Deinococcus roseus, novel members of the genus Deinococcus, isolated from a radioactive site in Japan
journal, March 2008


Arcticibacter svalbardensis gen. nov., sp. nov., of the family Sphingobacteriaceae in the phylum Bacteroidetes, isolated from Arctic soil
journal, August 2012

  • Prasad, S.; Manasa, B. P.; Buddhi, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 5
  • DOI: 10.1099/ijs.0.044420-0

Flavobacterium nitrogenifigens sp. nov., isolated from switchgrass (Panicum virgatum)
journal, September 2015

  • Glaeser, Stefanie P.; Xu, Jia; McInroy, John A.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 9
  • DOI: 10.1099/ijs.0.000330

Sunxiuqinia elliptica gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from sediment in a sea cucumber farm
journal, January 2011

  • Qu, L.; Zhu, F.; Hong, X.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 12
  • DOI: 10.1099/ijs.0.026971-0

Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland
journal, January 2000

  • Chung, A. P.; Rainey, F. A.; Valente, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 50, Issue 1
  • DOI: 10.1099/00207713-50-1-209

Fontibacter flavus gen. nov., sp. nov., a member of the family 'Cyclobacteriaceae', isolated from a hot spring
journal, October 2009

  • Kampfer, P.; Young, C. -C.; Chen, W. -M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 9
  • DOI: 10.1099/ijs.0.017210-0

Formosa algae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae
journal, May 2004

  • Ivanova, E. P.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 3
  • DOI: 10.1099/ijs.0.02763-0

Psychroserpens mesophilus sp. nov., a mesophilic marine bacterium belonging to the family Flavobacteriaceae isolated from a young biofilm
journal, May 2006

  • Kwon, K. K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 5
  • DOI: 10.1099/ijs.0.64171-0

Psychroserpens damuponensis sp. nov., isolated from seawater
journal, April 2012

  • Lee, D. -H.; Cho, S. J.; Kim, S. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
  • DOI: 10.1099/ijs.0.041632-0

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota
journal, August 2016


Deinococcus aquatilis sp. nov., isolated from water
journal, December 2008

  • Kampfer, P.; Lodders, N.; Huber, B.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 12
  • DOI: 10.1099/ijs.0.2008/001206-0

Aquimarina amphilecti sp. nov., isolated from the sponge Amphilectus fucorum
journal, October 2013

  • Kennedy, J.; Margassery, L. M.; O'Leary, N. D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.049650-0

Alkalitalea saponilacus gen. nov., sp. nov., an obligately anaerobic, alkaliphilic, xylanolytic bacterium from a meromictic soda lake
journal, December 2011

  • Zhao, B.; Chen, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 11
  • DOI: 10.1099/ijs.0.038315-0

Nafulsella turpanensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from soil
journal, August 2012

  • Zhang, L.; Shen, X.; Liu, Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 5
  • DOI: 10.1099/ijs.0.044651-0

Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces
journal, May 2010

  • Kitahara, M.; Tsuchida, S.; Kawasumi, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 4
  • DOI: 10.1099/ijs.0.024026-0

Arcicella rigui sp. nov., isolated from water of a wetland, and emended descriptions of the genus Arcicella, Arcicella aquatica, Arcicella rosea and Arcicella aurantiaca
journal, February 2012

  • Chen, W. -M.; Yang, S. -H.; Young, C. -C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 1
  • DOI: 10.1099/ijs.0.037242-0

Base composition bias might result from competition for metabolic resources
journal, June 2002


Thermoflavifilum aggregans gen. nov., sp. nov., a thermophilic and slightly halophilic filamentous bacterium from the phylum Bacteroidetes
journal, January 2014

  • Anders, H.; Dunfield, P. F.; Lagutin, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 4
  • DOI: 10.1099/ijs.0.057463-0

Rhodopirellula lusitana sp. nov. and Rhodopirellula rubra sp. nov., isolated from the surface of macroalgae
journal, May 2014

  • Bondoso, Joana; Albuquerque, Luciana; Lobo-da-Cunha, Alexandre
  • Systematic and Applied Microbiology, Vol. 37, Issue 3
  • DOI: 10.1016/j.syapm.2013.11.004

Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
journal, July 2006

  • Auch, Alexander F.; Henz, Stefan R.; Holland, Barbara R.
  • BMC Bioinformatics, Vol. 7, Issue 1
  • DOI: 10.1186/1471-2105-7-350

Genome-Based Taxonomic Classification of Bacteroidetes
journal, December 2016

  • Hahnke, Richard L.; Meier-Kolthoff, Jan P.; García-López, Marina
  • Frontiers in Microbiology, Vol. 7
  • DOI: 10.3389/fmicb.2016.02003

Bacteroides pyogenes sp. nov., Bacteroides suis sp. nov., and Bacteroides helcogenes sp. nov., New Species from Abscesses and Feces of Pigs
journal, August 1983


Flavobacterium croceum sp. nov., isolated from activated sludge
journal, October 2006

  • Park, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 10
  • DOI: 10.1099/ijs.0.64436-0

Deinococcus puniceus sp. nov., a Bacterium Isolated from Soil-Irradiated Gamma Radiation
journal, December 2014


Bacterial genomic G+C composition-eliciting environmental adaptation
journal, January 2010


Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces
journal, December 2008

  • Morotomi, M.; Nagai, F.; Sakon, H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 12
  • DOI: 10.1099/ijs.0.2008/000810-0

Coprobacter fastidiosus gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from infant faeces
journal, June 2013

  • Shkoporov, A. N.; Khokhlova, E. V.; Chaplin, A. V.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 11
  • DOI: 10.1099/ijs.0.052126-0

Pedobacter huanghensis sp. nov. and Pedobacter glacialis sp. nov., isolated from Arctic glacier foreland
journal, April 2014

  • Qiu, X.; Qu, Z.; Jiang, F.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 7
  • DOI: 10.1099/ijs.0.061648-0

Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus)
journal, August 2014


Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog
journal, October 2007

  • Pankratov, T. A.; Tindall, B. J.; Liesack, W.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 10
  • DOI: 10.1099/ijs.0.65100-0

Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp. nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca
journal, August 2015

  • Koblížek, Michal; Kaftan, David; Lukeš, Martin
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 8
  • DOI: 10.1099/ijs.0.000272

Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority
journal, March 2012

  • Sakamoto, M.; Ohkuma, M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
  • DOI: 10.1099/ijs.0.042531-0

Bacteroides acidifaciens sp. nov., isolated from the caecum of mice
journal, January 2000

  • Miyamoto, Y.; Itoh, K.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 50, Issue 1
  • DOI: 10.1099/00207713-50-1-145

Croceivirga radicis gen. nov., sp. nov., isolated from a rotten tropical mangrove root
journal, October 2017

  • Hu, Dong; Wang, Liping; Chen, Yanwu
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 10
  • DOI: 10.1099/ijsem.0.002179

Marinifilum fragile gen. nov., sp. nov., isolated from tidal flat sediment
journal, July 2009

  • Na, H.; Kim, S.; Moon, E. Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 9
  • DOI: 10.1099/ijs.0.009027-0

Croceitalea marina sp. nov., isolated from marine particles of Yellow Sea, and emended description of the genera Croceitalea
journal, October 2017

  • Su, Ying; Yu, Min; Ren, Qiaomeng
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 10
  • DOI: 10.1099/ijsem.0.002298

Lishizhenia tianjinensis sp. nov., isolated from coastal seawater
journal, July 2009

  • Chen, L. -P.; Xu, H. -Y.; Fu, S. -Z.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 10
  • DOI: 10.1099/ijs.0.008524-0

Sediminitomix flava gen. nov., sp. nov., of the phylum Bacteroidetes, isolated from marine sediment
journal, August 2007

  • Khan, S. T.; Nakagawa, Y.; Harayama, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 8
  • DOI: 10.1099/ijs.0.64854-0

Arenibacter hampyeongensis sp. nov., a marine bacterium isolated from a tidal flat
journal, April 2012

  • Jeong, S. H.; Jin, H. M.; Kim, J. M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
  • DOI: 10.1099/ijs.0.040683-0

Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3)
journal, November 2000

  • Hofstad, T.; Olsen, I.; Eribe, E. R.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 50, Issue 6
  • DOI: 10.1099/00207713-50-6-2189

Polaribacter sejongensis sp. nov., isolated from Antarctic soil, and emended descriptions of the genus Polaribacter, Polaribacter butkevichii and Polaribacter irgensii
journal, May 2013

  • Kim, B. -C.; Oh, H. W.; Kim, H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 11
  • DOI: 10.1099/ijs.0.047100-0

Lutibacter flavus sp. nov., a marine bacterium isolated from a tidal flat sediment
journal, June 2012

  • Choi, A.; Yang, S. -J.; Cho, J. -C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 3
  • DOI: 10.1099/ijs.0.043471-0

Thermophagus xiamenensis gen. nov., sp. nov., a moderately thermophilic and strictly anaerobic bacterium isolated from hot spring sediment
journal, February 2012

  • Gao, Z. -M.; Liu, X.; Zhang, X. -Y.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 1
  • DOI: 10.1099/ijs.0.038547-0

Emendation of the family Chlamydiaceae: Proposal of a single genus, Chlamydia, to include all currently recognized species
journal, March 2015

  • Sachse, Konrad; Bavoil, Patrik M.; Kaltenboeck, Bernhard
  • Systematic and Applied Microbiology, Vol. 38, Issue 2
  • DOI: 10.1016/j.syapm.2014.12.004

Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica
journal, October 2008

  • Bercovich, A.; Vazquez, S. C.; Yankilevich, P.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 10
  • DOI: 10.1099/ijs.0.65599-0

Gillisia mitskevichiae sp. nov., a novel bacterium of the family Flavobacteriaceae, isolated from sea water
journal, January 2005

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 1
  • DOI: 10.1099/ijs.0.63256-0

Algibacter lectus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from green algae
journal, July 2004

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 4
  • DOI: 10.1099/ijs.0.02949-0

Bacteroides faecis sp. nov., isolated from human faeces
journal, December 2009

  • Kim, M. -S.; Roh, S. W.; Bae, J. -W.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 11
  • DOI: 10.1099/ijs.0.020024-0

Sphingobacterium psychroaquaticum sp. nov., a psychrophilic bacterium isolated from Lake Michigan water
journal, June 2012

  • Albert, R. A.; Waas, N. E.; Pavlons, S. C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 3
  • DOI: 10.1099/ijs.0.043844-0

A Classification of Flexibacteria
journal, October 1969


Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces
journal, July 2011

  • Kitahara, M.; Sakamoto, M.; Tsuchida, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 5
  • DOI: 10.1099/ijs.0.032706-0

Terrimicrobium sacchariphilum gen. nov., sp. nov., an anaerobic bacterium of the class 'Spartobacteria' in the phylum Verrucomicrobia, isolated from a rice paddy field
journal, February 2014

  • Qiu, Y. -L.; Kuang, X. -z.; Shi, X. -s.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 5
  • DOI: 10.1099/ijs.0.060244-0

Gelidibacter sediminis sp. nov., isolated from a sediment sample of the Yellow Sea
journal, July 2015

  • Margesin, Rosa; Zhang, De-Chao
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7
  • DOI: 10.1099/ijs.0.000256

Chryseobacterium soldanellicola sp. nov. and Chryseobacterium taeanense sp. nov., isolated from roots of sand-dune plants
journal, February 2006

  • Park, M. S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 2
  • DOI: 10.1099/ijs.0.63825-0

Chryseobacterium culicis sp. nov., isolated from the midgut of the mosquito Culex quinquefasciatus
journal, November 2009

  • Kampfer, P.; Chandel, K.; Prasad, G. B. K. S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 10
  • DOI: 10.1099/ijs.0.019794-0

Dyadobacter crusticola sp. nov., from biological soil crusts in the Colorado Plateau, USA, and an emended description of the genus Dyadobacter Chelius and Triplett 2000
journal, May 2005

  • Reddy, G. S. N.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 3
  • DOI: 10.1099/ijs.0.63498-0

Dokdonia pacifica sp. nov., isolated from seawater
journal, July 2015

  • Gao, Xin; Zhang, Zenghu; Zhang, Xiao-Hua
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7
  • DOI: 10.1099/ijs.0.000252

Origin of an Alternative Genetic Code in the Extremely Small and GC–Rich Genome of a Bacterial Symbiont
journal, July 2009


Bacterial Gliding Motility: Rolling Out a Consensus Model
journal, February 2017


Evidence, Content and Corroboration and the Tree of Life
journal, November 2008


Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum 'Bacteroidetes', isolated from the green alga Ulva fenestrata
journal, January 2005

  • Nedashkovskaya, O. I.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 1
  • DOI: 10.1099/ijs.0.63341-0

Cloacibacterium normanense gen. nov., sp. nov., a novel bacterium in the family Flavobacteriaceae isolated from municipal wastewater
journal, June 2006

  • Allen, T. D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 6
  • DOI: 10.1099/ijs.0.64218-0

Spongiibacterium pacificum sp. nov., isolated from seawater of South Pacific Gyre and emended description of the genus Spongiibacterium
journal, October 2014

  • Gao, X.; Zhang, Z.; Dai, X.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 65, Issue Pt 1
  • DOI: 10.1099/ijs.0.069906-0

Filimonas lacunae gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from fresh water
journal, April 2009

  • Shiratori, H.; Tagami, Y.; Morishita, T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 5
  • DOI: 10.1099/ijs.0.002618-0

Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris)
journal, March 2007

  • Kwon, S. -W.; Kim, B. -Y.; Lee, K. -H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 3
  • DOI: 10.1099/ijs.0.64196-0

Environmental and Gut Bacteroidetes: The Food Connection
journal, January 2011

  • Thomas, François; Hehemann, Jan-Hendrik; Rebuffet, Etienne
  • Frontiers in Microbiology, Vol. 2
  • DOI: 10.3389/fmicb.2011.00093

Marivirga atlantica sp. nov., isolated from seawater and emended description of the genus Marivirga
journal, February 2015

  • Lin, C. -Y.; Zhang, X. -Y.; Liu, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 65, Issue Pt 5
  • DOI: 10.1099/ijs.0.000126

Longimonas halophila gen. nov., sp. nov., isolated from a marine solar saltern
journal, July 2015

  • Zhao, Li-Hua; Xia, Jun; Chen, Guan-Jun
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 7
  • DOI: 10.1099/ijs.0.000247

Pedobacter insulae sp. nov., isolated from soil
journal, September 2007

  • Yoon, J. -H.; Kang, S. -J.; Oh, H. W.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 9
  • DOI: 10.1099/ijs.0.64986-0

Robiginitalea myxolifaciens sp. nov., a novel myxol-producing bacterium isolated from marine sediment, and emended description of the genus Robiginitalea
journal, July 2008

  • Manh, H. D.; Matsuo, Y.; Katsuta, A.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 7
  • DOI: 10.1099/ijs.0.65598-0

Aureibacter tunicatorum gen. nov., sp. nov., a marine bacterium isolated from a coral reef sea squirt, and description of Flammeovirgaceae fam. nov.
journal, October 2010

  • Yoon, J.; Adachi, K.; Park, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 10
  • DOI: 10.1099/ijs.0.027573-0

Wenyingzhuangia marina gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a recirculating mariculture system
journal, October 2013

  • Liu, Y.; Liu, L. -Z.; Liu, H. -C.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.055012-0

Parabacteroides chinchillae sp. nov., isolated from chinchilla (Chincilla lanigera) faeces
journal, April 2013

  • Kitahara, M.; Sakamoto, M.; Tsuchida, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 9
  • DOI: 10.1099/ijs.0.050146-0

Flavobacterium sinopsychrotolerans sp. nov., isolated from a glacier
journal, January 2010

  • Xu, M.; Xin, Y.; Tian, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 1
  • DOI: 10.1099/ijs.0.014126-0

Mesonia phycicola sp. nov., isolated from seaweed, and emended description of the genus Mesonia
journal, August 2009

  • Kang, H. S.; Lee, S. D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 3
  • DOI: 10.1099/ijs.0.011338-0

Pedobacter agri sp. nov., from soil
journal, July 2008

  • Roh, S. W.; Quan, Z. -X.; Nam, Y. -D.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 7
  • DOI: 10.1099/ijs.0.65783-0

Mesoflavibacter sabulilitoris sp. nov., isolated from seashore sand
journal, August 2014

  • Park, S.; Park, J. -M.; Jung, Y. -T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 11
  • DOI: 10.1099/ijs.0.067223-0

Flavobacterium squillarum sp. nov., isolated from a freshwater shrimp culture pond, and emended descriptions of Flavobacterium haoranii, Flavobacterium cauense, Flavobacterium terrae and Flavobacterium aquatile
journal, November 2012

  • Sheu, S. -Y.; Lin, Y. -S.; Chen, W. -M.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 6
  • DOI: 10.1099/ijs.0.046425-0