Novel Insights Into the Spread of Enteric Pathogens Using Genomics
Abstract
Diarrheal diseases continue to be a leading cause of mortality and morbidity across the globe. The use of next-generation sequencing data has provided major insights into understanding epidemiological spread, antimicrobial resistance, vaccine effects, and basic mechanisms of bacterial and viral evolution. Furthermore, we discuss how genomic data have informed investigations across enteric pathogens, such as Shigella, Vibrio cholerae, Salmonella Typhi, rotavirus, and norovirus.
- Authors:
-
[1];
[1];
[1]
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
- Wellcome Sanger Institute, Hinxton (United Kingdom); Univ. of Cambridge, Cambridge (United Kingdom)
- Wellcome Sanger Institute, Hinxton (United Kingdom)
- Publication Date:
- Research Org.:
- Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
- Sponsoring Org.:
- USDOE Laboratory Directed Research and Development (LDRD) Program
- OSTI Identifier:
- 1570626
- Alternate Identifier(s):
- OSTI ID: 1562973
- Report Number(s):
- LA-UR-19-23908
Journal ID: ISSN 0022-1899
- Grant/Contract Number:
- 89233218CNA000001
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Infectious Diseases
- Additional Journal Information:
- Journal Volume: 221; Journal Issue: Supplement_3; Journal ID: ISSN 0022-1899
- Publisher:
- Infectious Diseases Society of America
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES; genomics; epidemiology; enterics; diarrheal diseases
Citation Formats
Domman, Daryl, Ruis, Christopher, Dorman, Matthew J., Shakya, Migun, and Chain, Patrick Sam Guy. Novel Insights Into the Spread of Enteric Pathogens Using Genomics. United States: N. p., 2019.
Web. doi:10.1093/infdis/jiz220.
Domman, Daryl, Ruis, Christopher, Dorman, Matthew J., Shakya, Migun, & Chain, Patrick Sam Guy. Novel Insights Into the Spread of Enteric Pathogens Using Genomics. United States. https://doi.org/10.1093/infdis/jiz220
Domman, Daryl, Ruis, Christopher, Dorman, Matthew J., Shakya, Migun, and Chain, Patrick Sam Guy. Fri .
"Novel Insights Into the Spread of Enteric Pathogens Using Genomics". United States. https://doi.org/10.1093/infdis/jiz220. https://www.osti.gov/servlets/purl/1570626.
@article{osti_1570626,
title = {Novel Insights Into the Spread of Enteric Pathogens Using Genomics},
author = {Domman, Daryl and Ruis, Christopher and Dorman, Matthew J. and Shakya, Migun and Chain, Patrick Sam Guy},
abstractNote = {Diarrheal diseases continue to be a leading cause of mortality and morbidity across the globe. The use of next-generation sequencing data has provided major insights into understanding epidemiological spread, antimicrobial resistance, vaccine effects, and basic mechanisms of bacterial and viral evolution. Furthermore, we discuss how genomic data have informed investigations across enteric pathogens, such as Shigella, Vibrio cholerae, Salmonella Typhi, rotavirus, and norovirus.},
doi = {10.1093/infdis/jiz220},
journal = {Journal of Infectious Diseases},
number = Supplement_3,
volume = 221,
place = {United States},
year = {Fri Sep 20 00:00:00 EDT 2019},
month = {Fri Sep 20 00:00:00 EDT 2019}
}
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Emergence of New Pandemic GII.4 Sydney Norovirus Strain Correlates With Escape From Herd Immunity
text, January 2013
- S., Baric, Ralph; Kari, Debbink,; C., Lindesmith, Lisa
- The University of North Carolina at Chapel Hill University Libraries
Genomic history of the seventh pandemic of cholera in Africa.
text, January 2017
- Weill, François-Xavier; Domman, Daryl; Njamkepo, Elisabeth
- Apollo - University of Cambridge Repository
A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection.
text, January 2017
- Dung, Tran Thi Ngoc; Duy, Pham Thanh; Sessions, October M.
- Apollo - University of Cambridge Repository
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.
text, January 2015
- Wong, Vanessa; Baker, Stephen; Pickard, Derek
- Apollo - University of Cambridge Repository
Immunogenetic Mechanisms Driving Norovirus GII.4 Antigenic Variation
text, January 2012
- Lindesmith, Lisa C.; Beltramello, Martina; Donaldson, Eric F.
- ETH Zurich
World Health Organization estimates of the global and regional disease burden of 22 foodborne bacterial, protozoal, and viral diseases, 2010: a data synthesis
text, January 2015
- Kirk, Martyn D.; Pires, Sara M.; Black, Robert E.
- Public Library of Science (PLoS)
Emergence of novel human norovirus GII.17 strains correlates with changes in blockade antibody epitopes
text, January 2017
- F., Donaldson, Eric; S., Baric, Ralph; Kari, Debbink,
- The University of North Carolina at Chapel Hill University Libraries
Norovirus GII.4 Strain Antigenic Variation
text, January 2011
- C., Lindesmith, L.; S., Baric, R.; F., Donaldson, E.
- The University of North Carolina at Chapel Hill University Libraries
The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.
journalarticle, January 2018
- Park, Se Eun; Pham, Duy Thanh; Boinett, Christine
- Springer Science and Business Media LLC
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events
text, January 2015
- Wong, Vanessa; Baker, Stephen; Pickard, Derek
- Apollo - University of Cambridge Repository
Rotavirus Infection [ロタウイルス感染症]
journal, January 1990
- Fujita, Yasuko
- Journal of the Japanese Association for Infectious Diseases, Vol. 64, Issue 10
Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins.
text, January 2018
- Klemm, Elizabeth J.; Shakoor, Sadia; Page, Andrew J.
- Apollo - University of Cambridge Repository
An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid.
text, January 2016
- Wong, Vanessa; Baker, Stephen; Connor, Thomas R.
- Apollo - University of Cambridge Repository