Rhizobacteria mediate the phytotoxicity of a range of biorefineryrelevant compounds

Herbert, Robin A.; Eng, Thomas; Martinez, Uriel; Wang, Brenda; Langley, Sasha; Wan, Kenneth; Pidatala, Venkataramana; Hoffman, Elijah; Chen, Joseph C.; Bissell, Mina J.; Brown, James B.; Mukhopadhyay, Aindrila; Mortimer, Jenny C.

doi:10.1002/etc.4501

Title: Rhizobacteria mediate the phytotoxicity of a range of biorefineryrelevant compounds

Journal Article · 26 July 2019 · Environmental Toxicology and Chemistry

DOI: https://doi.org/10.1002/etc.4501 · OSTI ID:1560185

Herbert, Robin A. ^[1]; Eng, Thomas ^[1]; Martinez, Uriel ^[2]; Wang, Brenda ^[3]; Langley, Sasha ^[3]; Wan, Kenneth ^[3]; Pidatala, Venkataramana ^[1]; Hoffman, Elijah ^[3]; Chen, Joseph C. ^[4]; Bissell, Mina J. ^[3]; Brown, James B. ^[3]; Mukhopadhyay, Aindrila ^[1]; Mortimer, Jenny C. ^[1]

Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); San Francisco State Univ., CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
San Francisco State Univ., CA (United States)

Advances in engineering biology have expanded the list of renewable compounds that can be produced at scale via biological routes from plant biomass. In most cases, these chemical products have not been evaluated for effects on biological systems, defined here as bioactivity, that may be relevant to their manufacture. For sustainable chemical and fuel production, the industry needs to transition from fossil to renewable carbon sources, resulting in unprecedented expansion in the production and environmental distribution of chemicals used in biomanufacturing. Further, while some chemicals have been assessed for mammalian toxicity, environmental and agricultural hazards are largely unknown. We assessed six compounds that are representative of the emerging biofuel and bioproduct manufacturing process for their effect on model plants (Arabidopsis thaliana, Sorghum bicolor) and show that several alter plant seedling physiology at sub-millimolar concentrations. However, these responses change in the presence of individual bacterial species from the A. thaliana root microbiome. We identified two individual microbes that change the effect of chemical treatment on root architecture, and a pooled microbial community with different effects relative to its constituents individually. Our findings indicate that screening industrial chemicals for bioactivity on model organisms in the presence of their microbiomes is important for biologically and ecologically relevant risk analyses. This article is protected by copyright. All rights reserved.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1560185

Alternate ID(s):: OSTI ID: 1542408; OSTI ID: 1560190

Journal Information:: Environmental Toxicology and Chemistry, Vol. 38; ISSN 0730-7268

Publisher:: SETACCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 1 work

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Auxins and Tropisms Muday, Gloria K. Journal of Plant Growth Regulation, Vol. 20, Issue 3 https://doi.org/10.1007/s003440010027	journal	September 2001
Sequential enzymatic saccharification and fermentation of ionic liquid and organosolv pretreated agave bagasse for ethanol production Pérez-Pimienta, Jose A.; Vargas-Tah, Alejandra; López-Ortega, Karla M. Bioresource Technology, Vol. 225 https://doi.org/10.1016/j.biortech.2016.11.064	journal	February 2017
Characterization of white poplar and eucalyptus after ionic liquid pretreatment as a function of biomass loading using X-ray diffraction and small angle neutron scattering Yuan, Xueming; Duan, Yonghao; He, Lilin Bioresource Technology, Vol. 232 https://doi.org/10.1016/j.biortech.2017.02.014	journal	May 2017
d-Limonene modulates T lymphocyte activity and viability Lappas, Courtney M.; Lappas, Nicholas T. Cellular Immunology, Vol. 279, Issue 1 https://doi.org/10.1016/j.cellimm.2012.09.002	journal	September 2012
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Plant growth-promoting bacteria confer resistance in tomato plants to salt stress Mayak, Shimon; Tirosh, Tsipora; Glick, Bernard R. Plant Physiology and Biochemistry, Vol. 42, Issue 6 https://doi.org/10.1016/j.plaphy.2004.05.009	journal	June 2004
Gut microbiome interactions with drug metabolism, efficacy, and toxicity Wilson, Ian D.; Nicholson, Jeremy K. Translational Research, Vol. 179 https://doi.org/10.1016/j.trsl.2016.08.002	journal	January 2017
Engineering Terpene Biosynthesis in Streptomyces for Production of the Advanced Biofuel Precursor Bisabolene Phelan, Ryan M.; Sekurova, Olga N.; Keasling, Jay D. ACS Synthetic Biology, Vol. 4, Issue 4 https://doi.org/10.1021/sb5002517	journal	July 2014
Defining the core Arabidopsis thaliana root microbiome Lundberg, Derek S.; Lebeis, Sarah L.; Paredes, Sur Herrera Nature, Vol. 488, Issue 7409 https://doi.org/10.1038/nature11237	journal	August 2012
NIH Image to ImageJ: 25 years of image analysis Schneider, Caroline A.; Rasband, Wayne S.; Eliceiri, Kevin W. Nature Methods, Vol. 9, Issue 7 https://doi.org/10.1038/nmeth.2089	journal	June 2012
Toxicity of Pine Monoterpenes to Mountain Pine Beetle Chiu, Christine C.; Keeling, Christopher I.; Bohlmann, Joerg Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-08983-y	journal	August 2017
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy Letunic, I.; Bork, P. Nucleic Acids Research, Vol. 39, Issue suppl https://doi.org/10.1093/nar/gkr201	journal	April 2011
Exploiting the Substrate Promiscuity of Hydroxycinnamoyl-CoA:Shikimate Hydroxycinnamoyl Transferase to Reduce Lignin Eudes, Aymerick; Pereira, Jose H.; Yogiswara, Sasha Plant and Cell Physiology, Vol. 57, Issue 3 https://doi.org/10.1093/pcp/pcw016	journal	February 2016
A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture Lobet, Guillaume; Pagès, Loïc; Draye, Xavier Plant Physiology, Vol. 157, Issue 1 https://doi.org/10.1104/pp.111.179895	journal	July 2011
Limonene hydroperoxide analogues differ in allergenic activity Christensson, Johanna Bråred; Johansson, Staffan; Hagvall, Lina Contact Dermatitis, Vol. 59, Issue 6 https://doi.org/10.1111/j.1600-0536.2008.01442.x	journal	December 2008
Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency Eudes, Aymerick; Sathitsuksanoh, Noppadon; Baidoo, Edward E. K. Plant Biotechnology Journal, Vol. 13, Issue 9 https://doi.org/10.1111/pbi.12310	journal	January 2015
Trends in glyphosate herbicide use in the United States and globally Benbrook, Charles M. Environmental Sciences Europe, Vol. 28, Issue 1 https://doi.org/10.1186/s12302-016-0070-0	journal	February 2016
Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification Li, Guotian; Jones, Kyle C.; Eudes, Aymerick BMC Biotechnology, Vol. 18, Issue 1 https://doi.org/10.1186/s12896-018-0464-8	journal	September 2018
Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates Sasaki, Yusuke; Eng, Thomas; Herbert, Robin A. Biotechnology for Biofuels, Vol. 12, Issue 1 https://doi.org/10.1186/s13068-019-1381-3	journal	February 2019
Design of synthetic bacterial communities for predictable plant phenotypes Herrera Paredes, Sur; Gao, Tianxiang; Law, Theresa F. PLOS Biology, Vol. 16, Issue 2 https://doi.org/10.1371/journal.pbio.2003962	journal	February 2018
Deciphering microbial interactions in synthetic human gut microbiome communities Venturelli, Ophelia S.; Carr, Alex V.; Fisher, Garth Molecular Systems Biology, Vol. 14, Issue 6 https://doi.org/10.15252/msb.20178157	journal	June 2018
Expression of S-adenosylmethionine Hydrolase in Tissues Synthesizing Secondary Cell Walls Alters Specific Methylated Cell Wall Fractions and Improves Biomass Digestibility Eudes, Aymerick; Zhao, Nanxia; Sathitsuksanoh, Noppadon Frontiers in Bioengineering and Biotechnology, Vol. 4 https://doi.org/10.3389/fbioe.2016.00058	journal	July 2016
Burkholderia phytofirmans PsJN induces long-term metabolic and transcriptional changes involved in Arabidopsis thaliana salt tolerance Pinedo, Ignacio; Ledger, Thomas; Greve, Macarena Frontiers in Plant Science, Vol. 6 https://doi.org/10.3389/fpls.2015.00466	journal	June 2015

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Toxicology screening
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Title: Rhizobacteria mediate the phytotoxicity of a range of biorefineryrelevant compounds

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