Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot
Abstract
The rocky, seasonally-dry and nutrient-impoverished soils of the Brazilian campos rupestres impose severe growth-limiting conditions on plants. Species of a dominant plant family, Velloziaceae, are highly specialized to low-nutrient conditions and seasonal water availability of this environment, where phosphorus (P) is the key limiting nutrient. Despite plant-microbe associations playing critical roles in stressful ecosystems, the contribution of these interactions in the campos rupestres remains poorly studied. Here we present the first microbiome data of Velloziaceae spp. thriving in contrasting substrates of campos rupestres. We assessed the microbiomes of Vellozia epidendroides, which occupies shallow patches of soil, and Barbacenia macrantha, growing on exposed rocks. The prokaryotic and fungal profiles were assessed by rRNA barcode sequencing of epiphytic and endophytic compartments of roots, stems, leaves and surrounding soil/rocks. We also generated root and substrate (rock/soil)-associated metagenomes of each plant species. We foresee that these data will contribute to decipher how the microbiome contributes to plant functioning in the campos rupestres, and to unravel new strategies for improved crop productivity in stressful environments.
- Authors:
-
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- Univ. Estadual de Campinas (UNICAMP), Campinas, SP (Brazil)
- Univ. Estadual de Campinas (UNICAMP), Campinas, SP (Brazil); Univ. of Western Australia, Perth, WA (Australia)
- Univ. Estadual de Campinas (UNICAMP), Campinas, SP (Brazil); Embrapa Informática Agropecuária, Campinas, SP (Brazil)
- Univ. Federal do Para (UFPA), Belem, PA (Brazil)
- Univ. of Western Australia, Perth, WA (Australia)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1559812
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Scientific Data
- Additional Journal Information:
- Journal Volume: 6; Journal Issue: 1; Journal ID: ISSN 2052-4463
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Camargo, Antonio Pedro, de Souza, Rafael Soares Correa, de Britto Costa, Patrícia, Gerhardt, Isabel Rodrigues, Dante, Ricardo Augusto, Teodoro, Grazielle Sales, Abrahão, Anna, Lambers, Hans, Carazzolle, Marcelo Falsarella, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I. -Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Pennacchio, Christa, Eloe-Fadrosh, Emiley A., Arruda, Paulo, and Oliveira, Rafael Silva. Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. United States: N. p., 2019.
Web. doi:10.1038/s41597-019-0141-3.
Camargo, Antonio Pedro, de Souza, Rafael Soares Correa, de Britto Costa, Patrícia, Gerhardt, Isabel Rodrigues, Dante, Ricardo Augusto, Teodoro, Grazielle Sales, Abrahão, Anna, Lambers, Hans, Carazzolle, Marcelo Falsarella, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I. -Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Pennacchio, Christa, Eloe-Fadrosh, Emiley A., Arruda, Paulo, & Oliveira, Rafael Silva. Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. United States. https://doi.org/10.1038/s41597-019-0141-3
Camargo, Antonio Pedro, de Souza, Rafael Soares Correa, de Britto Costa, Patrícia, Gerhardt, Isabel Rodrigues, Dante, Ricardo Augusto, Teodoro, Grazielle Sales, Abrahão, Anna, Lambers, Hans, Carazzolle, Marcelo Falsarella, Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I. -Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Pennacchio, Christa, Eloe-Fadrosh, Emiley A., Arruda, Paulo, and Oliveira, Rafael Silva. Wed .
"Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot". United States. https://doi.org/10.1038/s41597-019-0141-3. https://www.osti.gov/servlets/purl/1559812.
@article{osti_1559812,
title = {Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot},
author = {Camargo, Antonio Pedro and de Souza, Rafael Soares Correa and de Britto Costa, Patrícia and Gerhardt, Isabel Rodrigues and Dante, Ricardo Augusto and Teodoro, Grazielle Sales and Abrahão, Anna and Lambers, Hans and Carazzolle, Marcelo Falsarella and Huntemann, Marcel and Clum, Alicia and Foster, Brian and Foster, Bryce and Roux, Simon and Palaniappan, Krishnaveni and Varghese, Neha and Mukherjee, Supratim and Reddy, T. B. K. and Daum, Chris and Copeland, Alex and Chen, I. -Min A. and Ivanova, Natalia N. and Kyrpides, Nikos C. and Pennacchio, Christa and Eloe-Fadrosh, Emiley A. and Arruda, Paulo and Oliveira, Rafael Silva},
abstractNote = {The rocky, seasonally-dry and nutrient-impoverished soils of the Brazilian campos rupestres impose severe growth-limiting conditions on plants. Species of a dominant plant family, Velloziaceae, are highly specialized to low-nutrient conditions and seasonal water availability of this environment, where phosphorus (P) is the key limiting nutrient. Despite plant-microbe associations playing critical roles in stressful ecosystems, the contribution of these interactions in the campos rupestres remains poorly studied. Here we present the first microbiome data of Velloziaceae spp. thriving in contrasting substrates of campos rupestres. We assessed the microbiomes of Vellozia epidendroides, which occupies shallow patches of soil, and Barbacenia macrantha, growing on exposed rocks. The prokaryotic and fungal profiles were assessed by rRNA barcode sequencing of epiphytic and endophytic compartments of roots, stems, leaves and surrounding soil/rocks. We also generated root and substrate (rock/soil)-associated metagenomes of each plant species. We foresee that these data will contribute to decipher how the microbiome contributes to plant functioning in the campos rupestres, and to unravel new strategies for improved crop productivity in stressful environments.},
doi = {10.1038/s41597-019-0141-3},
journal = {Scientific Data},
number = 1,
volume = 6,
place = {United States},
year = {2019},
month = {7}
}
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