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Title: Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

Abstract

Metagenomic and metatranscriptomic time-series data covering a 52-day period in the fall of 2016 provide an inventory of bacterial and archaeal community genes, transcripts, and taxonomy during an intense dinoflagellate bloom in Monterey Bay, CA, USA. The dataset comprises 84 metagenomes (0.8 terabases), 82 metatranscriptomes (1.1 terabases), and 88 16S rRNA amplicon libraries from samples collected on 41 dates. The dataset also includes 88 18S rRNA amplicon libraries, characterizing the taxonomy of the eukaryotic community during the bloom. Accompanying the sequence data are chemical and biological measurements associated with each sample. These datasets will facilitate studies of the structure and function of marine bacterial communities during episodic phytoplankton blooms.

Authors:
ORCiD logo [1];  [1];  [1];  [2];  [3];  [3];  [3];  [3]; ORCiD logo [4];  [4];  [4];  [4]; ORCiD logo [4];  [4];  [4]; ORCiD logo [4];  [4];  [4];  [4];  [4] more »; ORCiD logo [4];  [4];  [4];  [1]; ORCiD logo [2]; ORCiD logo [4]; ORCiD logo [1] « less
  1. Univ. of Georgia, Athens, GA (United States)
  2. Univ. of South Alabama, Mobile, AL (United States); Dauphin Island Sea Lab, Dauphin Island, AL (United States)
  3. Monterey Bay Aquarium Research Inst., Moss Landing, CA (United States)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC); National Science Foundation (NSF)
OSTI Identifier:
1559811
Grant/Contract Number:  
AC02-05CH11231; OCE-1342694; OCE-1342699; OCE-1342734
Resource Type:
Accepted Manuscript
Journal Name:
Scientific Data
Additional Journal Information:
Journal Volume: 6; Journal Issue: 1; Journal ID: ISSN 2052-4463
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Nowinski, Brent, Smith, Christa B., Thomas, Courtney M., Esson, Kaitlin, Marin, Roman, Preston, Christina M., Birch, James M., Scholin, Christopher A., Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I. -Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Glavina del Rio, Tijana, Whitman, William B., Kiene, Ronald P., Eloe-Fadrosh, Emiley A., and Moran, Mary Ann. Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. United States: N. p., 2019. Web. doi:10.1038/s41597-019-0132-4.
Nowinski, Brent, Smith, Christa B., Thomas, Courtney M., Esson, Kaitlin, Marin, Roman, Preston, Christina M., Birch, James M., Scholin, Christopher A., Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I. -Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Glavina del Rio, Tijana, Whitman, William B., Kiene, Ronald P., Eloe-Fadrosh, Emiley A., & Moran, Mary Ann. Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. United States. doi:10.1038/s41597-019-0132-4.
Nowinski, Brent, Smith, Christa B., Thomas, Courtney M., Esson, Kaitlin, Marin, Roman, Preston, Christina M., Birch, James M., Scholin, Christopher A., Huntemann, Marcel, Clum, Alicia, Foster, Brian, Foster, Bryce, Roux, Simon, Palaniappan, Krishnaveni, Varghese, Neha, Mukherjee, Supratim, Reddy, T. B. K., Daum, Chris, Copeland, Alex, Chen, I. -Min A., Ivanova, Natalia N., Kyrpides, Nikos C., Glavina del Rio, Tijana, Whitman, William B., Kiene, Ronald P., Eloe-Fadrosh, Emiley A., and Moran, Mary Ann. Mon . "Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom". United States. doi:10.1038/s41597-019-0132-4. https://www.osti.gov/servlets/purl/1559811.
@article{osti_1559811,
title = {Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom},
author = {Nowinski, Brent and Smith, Christa B. and Thomas, Courtney M. and Esson, Kaitlin and Marin, Roman and Preston, Christina M. and Birch, James M. and Scholin, Christopher A. and Huntemann, Marcel and Clum, Alicia and Foster, Brian and Foster, Bryce and Roux, Simon and Palaniappan, Krishnaveni and Varghese, Neha and Mukherjee, Supratim and Reddy, T. B. K. and Daum, Chris and Copeland, Alex and Chen, I. -Min A. and Ivanova, Natalia N. and Kyrpides, Nikos C. and Glavina del Rio, Tijana and Whitman, William B. and Kiene, Ronald P. and Eloe-Fadrosh, Emiley A. and Moran, Mary Ann},
abstractNote = {Metagenomic and metatranscriptomic time-series data covering a 52-day period in the fall of 2016 provide an inventory of bacterial and archaeal community genes, transcripts, and taxonomy during an intense dinoflagellate bloom in Monterey Bay, CA, USA. The dataset comprises 84 metagenomes (0.8 terabases), 82 metatranscriptomes (1.1 terabases), and 88 16S rRNA amplicon libraries from samples collected on 41 dates. The dataset also includes 88 18S rRNA amplicon libraries, characterizing the taxonomy of the eukaryotic community during the bloom. Accompanying the sequence data are chemical and biological measurements associated with each sample. These datasets will facilitate studies of the structure and function of marine bacterial communities during episodic phytoplankton blooms.},
doi = {10.1038/s41597-019-0132-4},
journal = {Scientific Data},
number = 1,
volume = 6,
place = {United States},
year = {2019},
month = {7}
}

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