Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria
Abstract
Light takes on a central role on primary productivity of aquatic systems. However, its potential impact on the degradation of photosynthetically produced biomass is not well understood. We investigated the patterns of light-induced particle breakdown and bacterial assimilation of detrital C and N using 13C and 15N labeled freeze-thawed diatom cells incubated in laboratory microcosms with a marine microbial community freshly collected from the Pacific Ocean. Particles incubated in the dark resulted in increased bacterial counts and dissolved organic carbon concentrations compared to those incubated in the light. Light also influenced the attached and free-living microbial community structure as detected by 16S rRNA gene amplicon sequencing. For example, Sphingobacteriia were enriched on dark-incubated particles and taxa from the family Flavobacteriaceae and the genus Pseudoalteromonas were numerically enriched on particles in the light. Isotope incorporation analysis by phylogenetic microarray and NanoSIMS (a method called Chip-SIP) identified free-living and attached microbial taxa able to incorporate N and C from the particles. Some taxa, including members of the Flavobacteriaceae and Cryomorphaceae, exhibited increased isotope incorporation in the light, suggesting the use of photoheterotrophic metabolisms. Yet, some members of Oceanospirillales and Rhodospirillales showed decreased isotope incorporation in the light, suggesting that their heterotrophic metabolism,more »
- Authors:
-
- Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Ensenada (Mexico); Univ. of Southern California, Los Angeles, CA (United States)
- Univ. of Southern California, Los Angeles, CA (United States)
- Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
- Sponsoring Org.:
- USDOE National Nuclear Security Administration (NNSA); USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
- OSTI Identifier:
- 1548317
- Report Number(s):
- LLNL-JRNL-767293
Journal ID: ISSN 1664-302X; 957764
- Grant/Contract Number:
- AC52-07NA27344
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: na; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; photoheterotrophy; proteorhodopsin; aerobic anoxygenic phototrophy; microbial loop; free-living bacterioplankton; particle-attached bacterioplankton
Citation Formats
Gómez-Consarnau, Laura, Needham, David M., Weber, Peter K., Fuhrman, Jed A., and Mayali, Xavier. Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria. United States: N. p., 2019.
Web. doi:10.3389/fmicb.2019.01204.
Gómez-Consarnau, Laura, Needham, David M., Weber, Peter K., Fuhrman, Jed A., & Mayali, Xavier. Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria. United States. https://doi.org/10.3389/fmicb.2019.01204
Gómez-Consarnau, Laura, Needham, David M., Weber, Peter K., Fuhrman, Jed A., and Mayali, Xavier. Tue .
"Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria". United States. https://doi.org/10.3389/fmicb.2019.01204. https://www.osti.gov/servlets/purl/1548317.
@article{osti_1548317,
title = {Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria},
author = {Gómez-Consarnau, Laura and Needham, David M. and Weber, Peter K. and Fuhrman, Jed A. and Mayali, Xavier},
abstractNote = {Light takes on a central role on primary productivity of aquatic systems. However, its potential impact on the degradation of photosynthetically produced biomass is not well understood. We investigated the patterns of light-induced particle breakdown and bacterial assimilation of detrital C and N using 13C and 15N labeled freeze-thawed diatom cells incubated in laboratory microcosms with a marine microbial community freshly collected from the Pacific Ocean. Particles incubated in the dark resulted in increased bacterial counts and dissolved organic carbon concentrations compared to those incubated in the light. Light also influenced the attached and free-living microbial community structure as detected by 16S rRNA gene amplicon sequencing. For example, Sphingobacteriia were enriched on dark-incubated particles and taxa from the family Flavobacteriaceae and the genus Pseudoalteromonas were numerically enriched on particles in the light. Isotope incorporation analysis by phylogenetic microarray and NanoSIMS (a method called Chip-SIP) identified free-living and attached microbial taxa able to incorporate N and C from the particles. Some taxa, including members of the Flavobacteriaceae and Cryomorphaceae, exhibited increased isotope incorporation in the light, suggesting the use of photoheterotrophic metabolisms. Yet, some members of Oceanospirillales and Rhodospirillales showed decreased isotope incorporation in the light, suggesting that their heterotrophic metabolism, particularly when occurring on particles, might increase at night or may be inhibited by sunlight. These results show that light influences particle degradation and C and N incorporation by attached bacteria, suggesting that the transfer between particulate and free-living phases are likely affected by external factors that change with the light regime, such as time of day, water column depth and season.},
doi = {10.3389/fmicb.2019.01204},
journal = {Frontiers in Microbiology},
number = na,
volume = 10,
place = {United States},
year = {2019},
month = {6}
}
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- Ruiz-González, Clara; Simó, Rafel; Sommaruga, Ruben
- Frontiers in Microbiology, Vol. 4
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience
journal, February 2013
- Needham, David M.; Chow, Cheryl-Emiliane T.; Cram, Jacob A.
- The ISME Journal, Vol. 7, Issue 7
Search and clustering orders of magnitude faster than BLAST
journal, August 2010
- Edgar, Robert C.
- Bioinformatics, Vol. 26, Issue 19, p. 2460-2461
The ecology of Cytophaga–Flavobacteria in aquatic environments
journal, February 2002
- Kirchman, David L.
- FEMS Microbiology Ecology, Vol. 39, Issue 2
Comparison of Growth Rates of Aerobic Anoxygenic Phototrophic Bacteria and Other Bacterioplankton Groups in Coastal Mediterranean Waters
journal, July 2011
- Ferrera, Isabel; Gasol, Josep M.; Sebastián, Marta
- Applied and Environmental Microbiology, Vol. 77, Issue 21
Expression patterns reveal niche diversification in a marine microbial assemblage
journal, August 2012
- Gifford, Scott M.; Sharma, Shalabh; Booth, Melissa
- The ISME Journal, Vol. 7, Issue 2
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
journal, December 2014
- Love, Michael I.; Huber, Wolfgang; Anders, Simon
- Genome Biology, Vol. 15, Issue 12
Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria
journal, November 2015
- Gómez-Consarnau, Laura; González, José M.; Riedel, Thomas
- The ISME Journal, Vol. 10, Issue 5
Use of nuclepore filters for counting bacteria by fluorescence microscopy.
journal, January 1977
- Hobbie, J. E.; Daley, R. J.; Jasper, S.
- Applied and Environmental Microbiology, Vol. 33, Issue 5