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Title: Constraining estimates of terrestrial carbon uptake: new opportunities using long‐term satellite observations and data assimilation

ORCiD logo [1]; ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [1]; ORCiD logo [3]
  1. School of Natural Resources and the Environment University of Arizona Tucson AZ 85719 USA
  2. Department of Geography Indiana University Bloomington IN 47405 USA
  3. Jet Propulsion Laboratory California Institute of Technology Pasadena CA 91109 USA
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Resource Type:
Publisher's Accepted Manuscript
Journal Name:
New Phytologist
Additional Journal Information:
Journal Name: New Phytologist Journal Volume: 225 Journal Issue: 1; Journal ID: ISSN 0028-646X
Country of Publication:
United Kingdom

Citation Formats

Smith, William K., Fox, Andrew M., MacBean, Natasha, Moore, David J. P., and Parazoo, Nicholas C. Constraining estimates of terrestrial carbon uptake: new opportunities using long‐term satellite observations and data assimilation. United Kingdom: N. p., 2019. Web. doi:10.1111/nph.16055.
Smith, William K., Fox, Andrew M., MacBean, Natasha, Moore, David J. P., & Parazoo, Nicholas C. Constraining estimates of terrestrial carbon uptake: new opportunities using long‐term satellite observations and data assimilation. United Kingdom.
Smith, William K., Fox, Andrew M., MacBean, Natasha, Moore, David J. P., and Parazoo, Nicholas C. Sun . "Constraining estimates of terrestrial carbon uptake: new opportunities using long‐term satellite observations and data assimilation". United Kingdom.
title = {Constraining estimates of terrestrial carbon uptake: new opportunities using long‐term satellite observations and data assimilation},
author = {Smith, William K. and Fox, Andrew M. and MacBean, Natasha and Moore, David J. P. and Parazoo, Nicholas C.},
abstractNote = {},
doi = {10.1111/nph.16055},
journal = {New Phytologist},
number = 1,
volume = 225,
place = {United Kingdom},
year = {2019},
month = {8}

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Works referenced in this record:

The REFLEX project: Comparing different algorithms and implementations for the inversion of a terrestrial ecosystem model against eddy covariance data
journal, October 2009

A Continuous Satellite-Derived Measure of Global Terrestrial Primary Production
journal, January 2004

Forest water use and water use efficiency at elevated CO 2 : a model-data intercomparison at two contrasting temperate forest FACE sites
journal, March 2013

  • De Kauwe, Martin G.; Medlyn, Belinda E.; Zaehle, Sönke
  • Global Change Biology, Vol. 19, Issue 6
  • DOI: 10.1111/gcb.12164

Fine-root production dominates response of a deciduous forest to atmospheric CO2 enrichment
journal, June 2004

  • Norby, R. J.; Ledford, J.; Reilly, C. D.
  • Proceedings of the National Academy of Sciences, Vol. 101, Issue 26
  • DOI: 10.1073/pnas.0403491101

Recent reversal in loss of global terrestrial biomass
journal, March 2015

  • Liu, Yi Y.; van Dijk, Albert I. J. M.; de Jeu, Richard A. M.
  • Nature Climate Change, Vol. 5, Issue 5
  • DOI: 10.1038/nclimate2581

ISS observations offer insights into plant function
journal, June 2017

  • Stavros, E. Natasha; Schimel, David; Pavlick, Ryan
  • Nature Ecology & Evolution, Vol. 1, Issue 7
  • DOI: 10.1038/s41559-017-0194

Intensifying drought eliminates the expected benefits of elevated carbon dioxide for soybean
journal, September 2016

The shared and unique values of optical, fluorescence, thermal and microwave satellite data for estimating large-scale crop yields
journal, September 2017

Flux towers in the sky: global ecology from space
journal, June 2019

  • Schimel, David; Schneider, Fabian D.
  • New Phytologist, Vol. 224, Issue 2
  • DOI: 10.1111/nph.15934

Iterative near-term ecological forecasting: Needs, opportunities, and challenges
journal, January 2018

  • Dietze, Michael C.; Fox, Andrew; Beck-Johnson, Lindsay M.
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 7
  • DOI: 10.1073/pnas.1710231115

Forest response to elevated CO2 is conserved across a broad range of productivity
journal, December 2005

  • Norby, R. J.; DeLucia, E. H.; Gielen, B.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 50
  • DOI: 10.1073/pnas.0509478102

Ecological Lessons from Free-Air CO 2 Enrichment (FACE) Experiments
journal, December 2011

Joint assimilation of eddy covariance flux measurements and FAPAR products over temperate forests within a process‐oriented biosphere model
journal, September 2015

  • Bacour, C.; Peylin, P.; MacBean, N.
  • Journal of Geophysical Research: Biogeosciences, Vol. 120, Issue 9
  • DOI: 10.1002/2015JG002966

Decadal biomass increment in early secondary succession woody ecosystems is increased by CO2 enrichment
journal, February 2019

  • Walker, Anthony P.; De Kauwe, Martin G.; Medlyn, Belinda E.
  • Nature Communications, Vol. 10, Issue 1
  • DOI: 10.1038/s41467-019-08348-1

Global long-term passive microwave satellite-based retrievals of vegetation optical depth: LONG-TERM VEGETATION OPTICAL DEPTH
journal, September 2011

  • Liu, Yi Y.; de Jeu, Richard A. M.; McCabe, Matthew F.
  • Geophysical Research Letters, Vol. 38, Issue 18
  • DOI: 10.1029/2011GL048684

Satellite based estimates underestimate the effect of CO2 fertilization on net primary productivity
journal, September 2016

  • De Kauwe, Martin G.; Keenan, Trevor F.; Medlyn, Belinda E.
  • Nature Climate Change, Vol. 6, Issue 10
  • DOI: 10.1038/nclimate3105

Chlorophyll Fluorescence Better Captures Seasonal and Interannual Gross Primary Productivity Dynamics Across Dryland Ecosystems of Southwestern North America
journal, January 2018

  • Smith, W. K.; Biederman, J. A.; Scott, R. L.
  • Geophysical Research Letters, Vol. 45, Issue 2
  • DOI: 10.1002/2017GL075922

Improving plant allometry by fusing forest models and remote sensing
journal, April 2019

  • Fischer, Fabian Jörg; Maréchaux, Isabelle; Chave, Jérôme
  • New Phytologist, Vol. 223, Issue 3
  • DOI: 10.1111/nph.15810

Large influence of soil moisture on long-term terrestrial carbon uptake
journal, January 2019

Evaluation of a Data Assimilation System for Land Surface Models Using CLM4.5
journal, October 2018

  • Fox, Andrew M.; Hoar, Timothy J.; Anderson, Jeffrey L.
  • Journal of Advances in Modeling Earth Systems, Vol. 10, Issue 10
  • DOI: 10.1029/2018MS001362

Reduced CO2 fertilization effect in temperate C3 grasslands under more extreme weather conditions
journal, December 2016

  • Obermeier, W. A.; Lehnert, L. W.; Kammann, C. I.
  • Nature Climate Change, Vol. 7, Issue 2
  • DOI: 10.1038/nclimate3191

Contrasting responses of forest ecosystems to rising atmospheric CO 2 : Implications for the global C cycle : FOREST CARBON BUDGET
journal, July 2005

  • DeLucia, E. H.; Moore, D. J.; Norby, R. J.
  • Global Biogeochemical Cycles, Vol. 19, Issue 3
  • DOI: 10.1029/2004GB002346

Macro to micro: microwave remote sensing of plant water content for physiology and ecology
journal, April 2019

  • Konings, Alexandra G.; Rao, Krishna; Steele‐Dunne, Susan C.
  • New Phytologist, Vol. 223, Issue 3
  • DOI: 10.1111/nph.15808

Model-data synthesis for the next generation of forest free-air CO 2 enrichment (FACE) experiments
journal, August 2015

  • Norby, Richard J.; De Kauwe, Martin G.; Domingues, Tomas F.
  • New Phytologist, Vol. 209, Issue 1
  • DOI: 10.1111/nph.13593

Observing terrestrial ecosystems and the carbon cycle from space
journal, February 2015

  • Schimel, David; Pavlick, Ryan; Fisher, Joshua B.
  • Global Change Biology, Vol. 21, Issue 5
  • DOI: 10.1111/gcb.12822

Consistent assimilation of multiple data streams in a carbon cycle data assimilation system
journal, January 2016

  • MacBean, Natasha; Peylin, Philippe; Chevallier, Frédéric
  • Geoscientific Model Development, Vol. 9, Issue 10
  • DOI: 10.5194/gmd-9-3569-2016

Global Carbon Budget 2017
journal, January 2018

  • Le Quéré, Corinne; Andrew, Robbie M.; Friedlingstein, Pierre
  • Earth System Science Data, Vol. 10, Issue 1
  • DOI: 10.5194/essd-10-405-2018

Simulations of chlorophyll fluorescence incorporated into the Community Land Model version 4
journal, June 2015

  • Lee, Jung-Eun; Berry, Joseph A.; van der Tol, Christiaan
  • Global Change Biology, Vol. 21, Issue 9
  • DOI: 10.1111/gcb.12948

Plant growth enhancement by elevated CO2 eliminated by joint water and nitrogen limitation
journal, November 2014

  • Reich, Peter B.; Hobbie, Sarah E.; Lee, Tali D.
  • Nature Geoscience, Vol. 7, Issue 12
  • DOI: 10.1038/ngeo2284

Global vegetation biomass change (1988-2008) and attribution to environmental and human drivers: Global vegetation biomass change
journal, December 2012

  • Liu, Yi Y.; van Dijk, Albert I. J. M.; McCabe, Matthew F.
  • Global Ecology and Biogeography, Vol. 22, Issue 6
  • DOI: 10.1111/geb.12024

Global Retrievals of Solar‐Induced Chlorophyll Fluorescence With TROPOMI: First Results and Intersensor Comparison to OCO‐2
journal, October 2018

  • Köhler, Philipp; Frankenberg, Christian; Magney, Troy S.
  • Geophysical Research Letters, Vol. 45, Issue 19
  • DOI: 10.1029/2018GL079031

Deep learning and process understanding for data-driven Earth system science
journal, February 2019

Enhancing global change experiments through integration of remote‐sensing techniques
journal, April 2019

  • Shiklomanov, Alexey N.; Bradley, Bethany A.; Dahlin, Kyla M.
  • Frontiers in Ecology and the Environment, Vol. 17, Issue 4
  • DOI: 10.1002/fee.2031

Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: mechanisms and challenges
journal, May 2014

  • Porcar-Castell, Albert; Tyystjärvi, Esa; Atherton, Jon
  • Journal of Experimental Botany, Vol. 65, Issue 15
  • DOI: 10.1093/jxb/eru191

Reviews and syntheses: Systematic Earth observations for use in terrestrial carbon cycle data assimilation systems
journal, January 2017

Widespread seasonal compensation effects of spring warming on northern plant productivity
journal, October 2018

Increases in atmospheric CO 2 have little influence on transpiration of a temperate forest canopy
journal, October 2014

  • Tor-ngern, Pantana; Oren, Ram; Ward, Eric J.
  • New Phytologist, Vol. 205, Issue 2
  • DOI: 10.1111/nph.13148

Nitrogen Availability Dampens the Positive Impacts of CO 2 Fertilization on Terrestrial Ecosystem Carbon and Water Cycles
journal, November 2017

  • He, Liming; Chen, Jing M.; Croft, Holly
  • Geophysical Research Letters, Vol. 44, Issue 22
  • DOI: 10.1002/2017GL075981

Large divergence of satellite and Earth system model estimates of global terrestrial CO2 fertilization
journal, December 2015

  • Kolby Smith, W.; Reed, Sasha C.; Cleveland, Cory C.
  • Nature Climate Change, Vol. 6, Issue 3
  • DOI: 10.1038/nclimate2879

Climate and the Efficiency of Crop Production in Britain [and Discussion]
journal, November 1977

  • Monteith, J. L.; Moss, C. J.
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 281, Issue 980
  • DOI: 10.1098/rstb.1977.0140

CO2 enhancement of forest productivity constrained by limited nitrogen availability
journal, October 2010

  • Norby, R. J.; Warren, J. M.; Iversen, C. M.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 45
  • DOI: 10.1073/pnas.1006463107

Shifting from a fertilization-dominated to a warming-dominated period
journal, September 2017

  • Peñuelas, Josep; Ciais, Philippe; Canadell, Josep G.
  • Nature Ecology & Evolution, Vol. 1, Issue 10
  • DOI: 10.1038/s41559-017-0274-8

Terrestrial gross primary production inferred from satellite fluorescence and vegetation models
journal, July 2014

  • Parazoo, Nicholas C.; Bowman, Kevin; Fisher, Joshua B.
  • Global Change Biology, Vol. 20, Issue 10
  • DOI: 10.1111/gcb.12652

Strong constraint on modelled global carbon uptake using solar-induced chlorophyll fluorescence data
journal, January 2018

Greening of the Earth and its drivers
journal, April 2016

  • Zhu, Zaichun; Piao, Shilong; Myneni, Ranga B.
  • Nature Climate Change, Vol. 6, Issue 8
  • DOI: 10.1038/nclimate3004

Elevated CO2 as a driver of global dryland greening
journal, February 2016

  • Lu, Xuefei; Wang, Lixin; McCabe, Matthew F.
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep20716

Sun‐induced Chl fluorescence and its importance for biophysical modeling of photosynthesis based on light reactions
journal, April 2019

  • Gu, Lianhong; Han, Jimei; Wood, Jeffrey D.
  • New Phytologist, Vol. 223, Issue 3
  • DOI: 10.1111/nph.15796

Progressive Nitrogen Limitation of Ecosystem Responses to Rising Atmospheric Carbon Dioxide
journal, January 2004

A primer for data assimilation with ecological models using Markov Chain Monte Carlo (MCMC)
journal, August 2011

Estimating parameters of a forest ecosystem C model with measurements of stocks and fluxes as joint constraints
journal, April 2010

Woody plant cover estimation in drylands from Earth Observation based seasonal metrics
journal, January 2016

journal, June 2004

Mechanistic evidence for tracking the seasonality of photosynthesis with solar-induced fluorescence
journal, May 2019

  • Magney, Troy S.; Bowling, David R.; Logan, Barry A.
  • Proceedings of the National Academy of Sciences
  • DOI: 10.1073/pnas.1900278116

A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species
journal, June 1980

  • Farquhar, G. D.; von Caemmerer, S.; Berry, J. A.
  • Planta, Vol. 149, Issue 1
  • DOI: 10.1007/BF00386231

Assimilating solar-induced chlorophyll fluorescence into the terrestrial biosphere model BETHY-SCOPE v1.0: model description and information content
journal, January 2018

  • Norton, Alexander J.; Rayner, Peter J.; Koffi, Ernest N.
  • Geoscientific Model Development, Vol. 11, Issue 4
  • DOI: 10.5194/gmd-11-1517-2018

A new stepwise carbon cycle data assimilation system using multiple data streams to constrain the simulated land surface carbon cycle
journal, January 2016

  • Peylin, Philippe; Bacour, Cédric; MacBean, Natasha
  • Geoscientific Model Development, Vol. 9, Issue 9
  • DOI: 10.5194/gmd-9-3321-2016

Future productivity and carbon storage limited by terrestrial nutrient availability
journal, April 2015

  • Wieder, William R.; Cleveland, Cory C.; Smith, W. Kolby
  • Nature Geoscience, Vol. 8, Issue 6
  • DOI: 10.1038/ngeo2413

Satellite passive microwaves reveal recent climate-induced carbon losses in African drylands
journal, April 2018

  • Brandt, Martin; Wigneron, Jean-Pierre; Chave, Jerome
  • Nature Ecology & Evolution, Vol. 2, Issue 5
  • DOI: 10.1038/s41559-018-0530-6