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Title: Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina

Abstract

A novel yeast species was isolated from the sugar-rich stromata of Cyttaria hariotii collected from two different Nothofagus tree species in the Andean forests of Patagonia, Argentina. Phylogenetic analyses of the concatenated sequence of the rRNA gene sequences and the protein-coding genes for actin and translational elongation factor-1α indicated that the novel species belongs to the genus Hanseniaspora. De novo genome assembly of the strain CRUB 1928T yielded a 10.2-Mbp genome assembly predicted to encode 4452 protein-coding genes. The genome sequence data were compared to the genomes of other Hanseniaspora species using three different methods, an alignment-free distance measure, Kr, and two model-based estimations of DNA-DNA homology values, of which all provided indicative values to delineate species of Hanseniaspora. Given its potential role in a rare indigenous alcoholic beverage in which yeasts ferment sugars extracted from the stromata of Cytarria sp., we searched for the genes that may suggest adaptation of novel Hanseniaspora species to fermenting communities. The SSU1-like gene encoding a sulfite efflux pump, which, among Hanseniaspora, is present only in close relatives to the new species, was detected and analyzed, suggesting that this gene might be one factor that characterizes this novel species. We also discuss several candidatemore » genes that likely underlie the physiological traits used for traditional taxonomic identification. Based on these results, a novel yeast species with the name Hanseniaspora gamundiae sp. nov. is proposed with CRUB 1928T (ex-types: ZIM 2545T = NRRL Y-63793T = PYCC 7262T; MycoBank number MB 824091) as the type strain. Furthermore, we propose the transfer of the Kloeckera species, K. hatyaiensis, K. lindneri and K. taiwanica to the genus Hanseniaspora as Hanseniaspora hatyaiensis comb. nov. (MB 828569), Hanseniaspora lindneri comb. nov. (MB 828566) and Hanseniaspora taiwanica comb. nov. (MB 828567).« less

Authors:
 [1]; ORCiD logo [2];  [3]; ORCiD logo [4]; ORCiD logo [2]
  1. Univ. of Ljubljana, Ljubljana (Slovenia)
  2. Científicas y Técnicas (CONICET)-Univ. Nacional del Comahue, Bariloche (Argentina)
  3. Consejo Nacional de Investigaciones, Científicas y Técnicas (CONICET)-Univ. Nacional del Comahue, Neuquén (Argentina)
  4. Univ. of Wisconsin, Madison, WI (United States). Great Lakes Bioenergy Research Center
Publication Date:
Research Org.:
Univ. of Wisconsin, Madison, WI (United States). Great Lakes Bioenergy Research Center
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Contributing Org.:
Argentinean National Park Administration; University of Wisconsin Biotechnology Center DNA Sequencing Facility
OSTI Identifier:
1546708
Grant/Contract Number:  
SC0018409
Resource Type:
Accepted Manuscript
Journal Name:
PLoS ONE
Additional Journal Information:
Journal Volume: 14; Journal Issue: 1; Journal ID: ISSN 1932-6203
Publisher:
Public Library of Science
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Čadež, Neža, Bellora, Nicolas, Ulloa, Ricardo, Hittinger, Chris Todd, and Libkind, Diego. Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina. United States: N. p., 2019. Web. doi:10.1371/journal.pone.0210792.
Čadež, Neža, Bellora, Nicolas, Ulloa, Ricardo, Hittinger, Chris Todd, & Libkind, Diego. Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina. United States. https://doi.org/10.1371/journal.pone.0210792
Čadež, Neža, Bellora, Nicolas, Ulloa, Ricardo, Hittinger, Chris Todd, and Libkind, Diego. Wed . "Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina". United States. https://doi.org/10.1371/journal.pone.0210792. https://www.osti.gov/servlets/purl/1546708.
@article{osti_1546708,
title = {Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina},
author = {Čadež, Neža and Bellora, Nicolas and Ulloa, Ricardo and Hittinger, Chris Todd and Libkind, Diego},
abstractNote = {A novel yeast species was isolated from the sugar-rich stromata of Cyttaria hariotii collected from two different Nothofagus tree species in the Andean forests of Patagonia, Argentina. Phylogenetic analyses of the concatenated sequence of the rRNA gene sequences and the protein-coding genes for actin and translational elongation factor-1α indicated that the novel species belongs to the genus Hanseniaspora. De novo genome assembly of the strain CRUB 1928T yielded a 10.2-Mbp genome assembly predicted to encode 4452 protein-coding genes. The genome sequence data were compared to the genomes of other Hanseniaspora species using three different methods, an alignment-free distance measure, Kr, and two model-based estimations of DNA-DNA homology values, of which all provided indicative values to delineate species of Hanseniaspora. Given its potential role in a rare indigenous alcoholic beverage in which yeasts ferment sugars extracted from the stromata of Cytarria sp., we searched for the genes that may suggest adaptation of novel Hanseniaspora species to fermenting communities. The SSU1-like gene encoding a sulfite efflux pump, which, among Hanseniaspora, is present only in close relatives to the new species, was detected and analyzed, suggesting that this gene might be one factor that characterizes this novel species. We also discuss several candidate genes that likely underlie the physiological traits used for traditional taxonomic identification. Based on these results, a novel yeast species with the name Hanseniaspora gamundiae sp. nov. is proposed with CRUB 1928T (ex-types: ZIM 2545T = NRRL Y-63793T = PYCC 7262T; MycoBank number MB 824091) as the type strain. Furthermore, we propose the transfer of the Kloeckera species, K. hatyaiensis, K. lindneri and K. taiwanica to the genus Hanseniaspora as Hanseniaspora hatyaiensis comb. nov. (MB 828569), Hanseniaspora lindneri comb. nov. (MB 828566) and Hanseniaspora taiwanica comb. nov. (MB 828567).},
doi = {10.1371/journal.pone.0210792},
journal = {PLoS ONE},
number = 1,
volume = 14,
place = {United States},
year = {Wed Jan 30 00:00:00 EST 2019},
month = {Wed Jan 30 00:00:00 EST 2019}
}

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Works referenced in this record:

Genome Sequences of Three Species of Hanseniaspora Isolated from Spontaneous Wine Fermentations: TABLE 1 
journal, November 2016


Phylogenomics reveal a robust fungal tree of life
journal, December 2006


BLAT---The BLAST-Like Alignment Tool
journal, March 2002


Genome Sequence of the Native Apiculate Wine Yeast Hanseniaspora vineae T02/19AF
journal, May 2014


Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data
journal, September 2016

  • Shen, Xing-Xing; Zhou, Xiaofan; Kominek, Jacek
  • G3: Genes|Genomes|Genetics, Vol. 6, Issue 12
  • DOI: 10.1534/g3.116.034744

Transposable elements in yeasts
journal, August 2011

  • Bleykasten-Grosshans, Claudine; Neuvéglise, Cécile
  • Comptes Rendus Biologies, Vol. 334, Issue 8-9
  • DOI: 10.1016/j.crvi.2011.05.017

Interaction between Hanseniaspora uvarum and Saccharomyces cerevisiae during alcoholic fermentation
journal, August 2015


Comparison of Fermentation and Wines Produced by Inoculation of Hanseniaspora vineae and Saccharomyces cerevisiae
journal, March 2016

  • Lleixà, Jessica; Martín, Valentina; Portillo, María del C.
  • Frontiers in Microbiology, Vol. 7
  • DOI: 10.3389/fmicb.2016.00338

Induction of specific enzymes of the oxidative pentose phosphate pathway by glucono- -lactone in Saccharomyces cerevisiae
journal, September 1992


Phylogeography of the wild Lager-brewing ancestor ( Saccharomyces eubayanus ) in Patagonia
journal, October 2018

  • Eizaguirre, Juan I.; Peris, David; Rodríguez, María E.
  • Environmental Microbiology, Vol. 20, Issue 10
  • DOI: 10.1111/1462-2920.14375

A review of chemical composition and nutritional value of wild-growing and cultivated mushrooms: Chemical composition of edible mushrooms
journal, November 2012

  • Kalač, Pavel
  • Journal of the Science of Food and Agriculture, Vol. 93, Issue 2
  • DOI: 10.1002/jsfa.5960

A population genomics insight into the Mediterranean origins of wine yeast domestication
journal, September 2015

  • Almeida, Pedro; Barbosa, Raquel; Zalar, Polona
  • Molecular Ecology, Vol. 24, Issue 21
  • DOI: 10.1111/mec.13341

Relationships among genera of the Saccharomycotina ( Ascomycota ) from multigene phylogenetic analysis of type species
journal, February 2013


tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997


Drosophila -associated yeast species in vineyard ecosystems
journal, September 2015

  • Lam, Samuel S. T. H.; Howell, Kate S.
  • FEMS Microbiology Letters, Vol. 362, Issue 20
  • DOI: 10.1093/femsle/fnv170

Hanseniaspora nectarophila sp. nov., a yeast species isolated from ephemeral flowers
journal, April 2014

  •  ade , N.; Pagnocca, F. C.; Raspor, P.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 7
  • DOI: 10.1099/ijs.0.061499-0

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
journal, August 2005


Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites
journal, March 2017

  • Almeida, Pedro; Barbosa, Raquel; Bensasson, Douda
  • Molecular Ecology, Vol. 26, Issue 7
  • DOI: 10.1111/mec.14071

Natural Populations of Saccharomyces kudriavzevii in Portugal Are Associated with Oak Bark and Are Sympatric with S. cerevisiae and S. paradoxus
journal, February 2008

  • Sampaio, J. P.; Goncalves, P.
  • Applied and Environmental Microbiology, Vol. 74, Issue 7
  • DOI: 10.1128/AEM.02396-07

Three new species of bipolar budding yeasts of the genus Hanseniaspora and its anamorph Kloeckera isolated in Thailand
journal, December 2009


Partial sequence analysis of the actin gene and its potential for studying the phylogeny of Candida species and their teleomorphs.
journal, July 2001

  • Daniel, H. M.; Meyer, W.; Sorrell, T. C.
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 51, Issue 4
  • DOI: 10.1099/00207713-51-4-1593

Microbial species delineation using whole genome sequences
journal, July 2015

  • Varghese, Neha J.; Mukherjee, Supratim; Ivanova, Natalia
  • Nucleic Acids Research, Vol. 43, Issue 14
  • DOI: 10.1093/nar/gkv657

Remarkably ancient balanced polymorphisms in a multi-locus gene network
journal, February 2010

  • Hittinger, Chris Todd; Gonçalves, Paula; Sampaio, José Paulo
  • Nature, Vol. 464, Issue 7285
  • DOI: 10.1038/nature08791

Hanseniaspora meyeri sp. nov., Hanseniaspora clermontiae sp. nov., Hanseniaspora lachancei sp. nov. and Hanseniaspora opuntiae sp. nov., novel apiculate yeast species
journal, September 2003

  • Cadez, N.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 53, Issue 5
  • DOI: 10.1099/ijs.0.02618-0

Genome-scale approaches to resolving incongruence in molecular phylogenies
journal, October 2003

  • Rokas, Antonis; Williams, Barry L.; King, Nicole
  • Nature, Vol. 425, Issue 6960
  • DOI: 10.1038/nature02053

Application of Phylogenetic Networks in Evolutionary Studies
journal, October 2005

  • Huson, Daniel H.; Bryant, David
  • Molecular Biology and Evolution, Vol. 23, Issue 2
  • DOI: 10.1093/molbev/msj030

On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription
journal, April 2014

  • Daniel, Heide-Marie; Lachance, Marc-André; Kurtzman, Cletus P.
  • Antonie van Leeuwenhoek, Vol. 106, Issue 1
  • DOI: 10.1007/s10482-014-0170-z

Comparative genomics of biotechnologically important yeasts
journal, August 2016

  • Riley, Robert; Haridas, Sajeet; Wolfe, Kenneth H.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 35
  • DOI: 10.1073/pnas.1603941113

Assessing the gene space in draft genomes
journal, November 2008

  • Parra, Genis; Bradnam, Keith; Ning, Zemin
  • Nucleic Acids Research, Vol. 37, Issue 1
  • DOI: 10.1093/nar/gkn916

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
journal, May 2012

  • Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry
  • Journal of Computational Biology, Vol. 19, Issue 5
  • DOI: 10.1089/cmb.2012.0021

Advances in yeast systematics and phylogeny and their use as predictors of biotechnologically important metabolic pathways
journal, June 2015

  • Kurtzman, Cletus P.; Mateo, Raquel Quintilla; Kolecka, Anna
  • FEMS Yeast Research, Vol. 15, Issue 6
  • DOI: 10.1093/femsyr/fov050

Kloeckera taiwanica sp. nov., an ascomycetous apiculate yeast species isolated from mushroom fruiting bodies
journal, August 2011

  • Chang, C. -F.; Huang, L. -Y.; Chen, S. -F.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 6
  • DOI: 10.1099/ijs.0.034231-0

A unified classification system for eukaryotic transposable elements
journal, December 2007

  • Wicker, Thomas; Sabot, François; Hua-Van, Aurélie
  • Nature Reviews Genetics, Vol. 8, Issue 12
  • DOI: 10.1038/nrg2165

Confidence Limits on Phylogenies: an Approach Using the Bootstrap
journal, July 1985


Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
journal, August 2011

  • Libkind, D.; Hittinger, C. T.; Valerio, E.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 35
  • DOI: 10.1073/pnas.1105430108

Evolution of gene families: the multidrug resistance transporter genes in five related yeast species
journal, May 2006


Biogeography, Host Specificity, and Molecular Phylogeny of the Basidiomycetous Yeast Phaffia rhodozyma and Its Sexual Form, Xanthophyllomyces dendrorhous
journal, December 2006

  • Libkind, D.; Ruffini, A.; van Broock, M.
  • Applied and Environmental Microbiology, Vol. 73, Issue 4
  • DOI: 10.1128/AEM.01432-06

The Reference Genome Sequence of Saccharomyces cerevisiae : Then and Now
journal, December 2013

  • Engel, Stacia R.; Dietrich, Fred S.; Fisk, Dianna G.
  • G3: Genes|Genomes|Genetics, Vol. 4, Issue 3
  • DOI: 10.1534/g3.113.008995

Factors driving metabolic diversity in the budding yeast subphylum
journal, March 2018


Genomics and the making of yeast biodiversity
journal, December 2015

  • Hittinger, Chris Todd; Rokas, Antonis; Bai, Feng-Yan
  • Current Opinion in Genetics & Development, Vol. 35
  • DOI: 10.1016/j.gde.2015.10.008

A large-scale evaluation of algorithms to calculate average nucleotide identity
journal, February 2017


MUSCLE: multiple sequence alignment with high accuracy and high throughput
journal, March 2004

  • Edgar, R. C.
  • Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797
  • DOI: 10.1093/nar/gkh340

Genomes of Ashbya Fungi Isolated from Insects Reveal Four Mating-Type Loci, Numerous Translocations, Lack of Transposons, and Distinct Gene Duplications
journal, June 2013

  • Dietrich, Fred S.; Voegeli, Sylvia; Kuo, Sidney
  • G3: Genes|Genomes|Genetics, Vol. 3, Issue 8
  • DOI: 10.1534/g3.112.002881

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
journal, October 2008

  • Ter-Hovhannisyan, V.; Lomsadze, A.; Chernoff, Y. O.
  • Genome Research, Vol. 18, Issue 12
  • DOI: 10.1101/gr.081612.108

Hanseniaspora jakobsenii sp. nov., a yeast isolated from Bandji, a traditional palm wine of Borassus akeassii
journal, October 2015

  • Diawara, Bréhima; Kando, Christine; Anyogu, Amarachukwu
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 10
  • DOI: 10.1099/ijsem.0.000461

TCS: a computer program to estimate gene genealogies
journal, October 2000


Phylogenetic relationships among yeasts of the ? complex? determined from multigene sequence analyses
journal, June 2003


MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
journal, October 2013

  • Tamura, Koichiro; Stecher, Glen; Peterson, Daniel
  • Molecular Biology and Evolution, Vol. 30, Issue 12
  • DOI: 10.1093/molbev/mst197

Repbase Update, a database of eukaryotic repetitive elements
journal, January 2005

  • Jurka, J.; Kapitonov, V. V.; Pavlicek, A.
  • Cytogenetic and Genome Research, Vol. 110, Issue 1-4
  • DOI: 10.1159/000084979

Yeast-Yeast Interactions in Guava and Tomato Fruits
journal, August 2001

  • Abranches, J.; Starmer, W. T.; Hagler, A. N.
  • Microbial Ecology, Vol. 42, Issue 2
  • DOI: 10.1007/s002480000111

Glutathione is an essential metabolite required for resistance to oxidative stress in the yeast Saccharomyces cerevisiae
journal, May 1996

  • MacIver, Fiona H.; Dawes, Ian W.; Grant, C. M.
  • Current Genetics, Vol. 29, Issue 6
  • DOI: 10.1007/s002940050079

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997


Lysobacter telluris sp. nov., isolated from Korean rhizosphere soil
journal, September 2020


Genome Sequencing of Kocuria varians Strain 80, Isolated from Starter Culture for Dry Sausage
journal, February 2021

  • Konorov, Evgenii A.; Kurbakov, Konstantin A.; Minaev, Mikhail Y.
  • Microbiology Resource Announcements, Vol. 10, Issue 8
  • DOI: 10.1128/mra.00086-21

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium
journal, April 2021


Confidence Limits on Phylogenies: An Approach Using the Bootstrap
journal, July 1985

  • Felsenstein, Joseph
  • Evolution, Vol. 39, Issue 4, p. 783-791
  • DOI: 10.2307/2408678

Systematics of Hanseniaspora Zikes and Kloeckera Janke
journal, January 1978

  • Meyer, Sally A.; Smith, Maudy Th.; Simione, F. P.
  • Antonie van Leeuwenhoek, Vol. 44, Issue 1
  • DOI: 10.1007/bf00400078

Sulfite formation by wine yeasts
journal, January 1976

  • Heinzel, Michael; Tr�per, Hans G.
  • Archives of Microbiology, Vol. 107, Issue 3
  • DOI: 10.1007/bf00425342

Glutathione is an essential metabolite required for resistance to oxidative stress in the yeastSaccharomyces cerevisiae
journal, May 1996

  • Grant, Chris M.; MacIver, Fiona H.; Dawes, Ian W.
  • Current Genetics, Vol. 29, Issue 6
  • DOI: 10.1007/bf02426954

On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription
journal, April 2014

  • Daniel, Heide-Marie; Lachance, Marc-André; Kurtzman, Cletus P.
  • Antonie van Leeuwenhoek, Vol. 106, Issue 1
  • DOI: 10.1007/s10482-014-0170-z

Metschnikowia mating genomics
journal, April 2018

  • Lee, Dong Kyung; Hsiang, Tom; Lachance, Marc-André
  • Antonie van Leeuwenhoek, Vol. 111, Issue 10
  • DOI: 10.1007/s10482-018-1084-y

Gottfriedia endophyticus sp. nov., a novel indole-acetic acid producing bacterium isolated from the roots of rice plant
journal, May 2022


Transposable elements in yeasts
journal, August 2011

  • Bleykasten-Grosshans, Claudine; Neuvéglise, Cécile
  • Comptes Rendus Biologies, Vol. 334, Issue 8-9
  • DOI: 10.1016/j.crvi.2011.05.017

Genome-scale approaches to resolving incongruence in molecular phylogenies
journal, October 2003

  • Rokas, Antonis; Williams, Barry L.; King, Nicole
  • Nature, Vol. 425, Issue 6960
  • DOI: 10.1038/nature02053

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
journal, August 2011

  • Libkind, D.; Hittinger, C. T.; Valerio, E.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 35
  • DOI: 10.1073/pnas.1105430108

Drosophila -associated yeast species in vineyard ecosystems
journal, September 2015

  • Lam, Samuel S. T. H.; Howell, Kate S.
  • FEMS Microbiology Letters, Vol. 362, Issue 20
  • DOI: 10.1093/femsle/fnv170

Advances in yeast systematics and phylogeny and their use as predictors of biotechnologically important metabolic pathways
journal, June 2015

  • Kurtzman, Cletus P.; Mateo, Raquel Quintilla; Kolecka, Anna
  • FEMS Yeast Research, Vol. 15, Issue 6
  • DOI: 10.1093/femsyr/fov050

Diversity of yeast species from Dutch garden soil and the description of six novel Ascomycetes
journal, July 2018

  • Groenewald, Marizeth; Lombard, Lorenzo; de Vries, Michel
  • FEMS Yeast Research
  • DOI: 10.1093/femsyr/foy076

Application of Phylogenetic Networks in Evolutionary Studies
journal, October 2005

  • Huson, Daniel H.; Bryant, David
  • Molecular Biology and Evolution, Vol. 23, Issue 2
  • DOI: 10.1093/molbev/msj030

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
journal, October 2013

  • Tamura, Koichiro; Stecher, Glen; Peterson, Daniel
  • Molecular Biology and Evolution, Vol. 30, Issue 12
  • DOI: 10.1093/molbev/mst197

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997


MUSCLE: multiple sequence alignment with high accuracy and high throughput
journal, March 2004

  • Edgar, R. C.
  • Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797
  • DOI: 10.1093/nar/gkh340

Assessing the gene space in draft genomes
journal, November 2008

  • Parra, Genis; Bradnam, Keith; Ning, Zemin
  • Nucleic Acids Research, Vol. 37, Issue 1
  • DOI: 10.1093/nar/gkn916

Microbial species delineation using whole genome sequences
journal, July 2015

  • Varghese, Neha J.; Mukherjee, Supratim; Ivanova, Natalia
  • Nucleic Acids Research, Vol. 43, Issue 14
  • DOI: 10.1093/nar/gkv657

Induction of specific enzymes of the oxidative pentose phosphate pathway by glucono- -lactone in Saccharomyces cerevisiae
journal, September 1992


Kloeckera taiwanica sp. nov., an ascomycetous apiculate yeast species isolated from mushroom fruiting bodies
journal, August 2011

  • Chang, C. -F.; Huang, L. -Y.; Chen, S. -F.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 6
  • DOI: 10.1099/ijs.0.034231-0

Hanseniaspora nectarophila sp. nov., a yeast species isolated from ephemeral flowers
journal, April 2014

  •  ade , N.; Pagnocca, F. C.; Raspor, P.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 7
  • DOI: 10.1099/ijs.0.061499-0

Hanseniaspora jakobsenii sp. nov., a yeast isolated from Bandji, a traditional palm wine of Borassus akeassii
journal, October 2015

  • Diawara, Bréhima; Kando, Christine; Anyogu, Amarachukwu
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 10
  • DOI: 10.1099/ijsem.0.000461

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
journal, October 2008

  • Ter-Hovhannisyan, V.; Lomsadze, A.; Chernoff, Y. O.
  • Genome Research, Vol. 18, Issue 12
  • DOI: 10.1101/gr.081612.108

Phylogeography of the wild Lager-brewing ancestor ( Saccharomyces eubayanus ) in Patagonia
journal, October 2018

  • Eizaguirre, Juan I.; Peris, David; Rodríguez, María E.
  • Environmental Microbiology, Vol. 20, Issue 10
  • DOI: 10.1111/1462-2920.14375

Relationships among genera of the Saccharomycotina ( Ascomycota ) from multigene phylogenetic analysis of type species
journal, February 2013


Molecular identification and genetic diversity within species of the generaHanseniasporaandKloeckera
journal, January 2002


Phylogenomics reveal a robust fungal tree of life
journal, December 2006


Three new species of bipolar budding yeasts of the genus Hanseniaspora and its anamorph Kloeckera isolated in Thailand
journal, December 2009


A population genomics insight into the Mediterranean origins of wine yeast domestication
journal, September 2015

  • Almeida, Pedro; Barbosa, Raquel; Zalar, Polona
  • Molecular Ecology, Vol. 24, Issue 21
  • DOI: 10.1111/mec.13341

Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites
journal, March 2017

  • Almeida, Pedro; Barbosa, Raquel; Bensasson, Douda
  • Molecular Ecology, Vol. 26, Issue 7
  • DOI: 10.1111/mec.14071

Two Distinct Pathways for Trehalose Assimilation in the Yeast Saccharomyces cerevisiae
journal, May 2004


Genome sequence-based species delimitation with confidence intervals and improved distance functions
journal, January 2013

  • Meier-Kolthoff, Jan P.; Auch, Alexander F.; Klenk, Hans-Peter
  • BMC Bioinformatics, Vol. 14, Issue 1
  • DOI: 10.1186/1471-2105-14-60

Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis
journal, January 2006

  • Tkaczuk, Karolina L.; Obarska, Agnieszka; Bujnicki, Janusz M.
  • BMC Evolutionary Biology, Vol. 6, Issue 1
  • DOI: 10.1186/1471-2148-6-6

Emiliania huxleyi endures N-limitation with an efficient metabolic budgeting and effective ATP synthesis
journal, January 2014


Factors driving metabolic diversity in the budding yeast subphylum
journal, March 2018


The Reference Genome Sequence of Saccharomyces cerevisiae : Then and Now
journal, December 2013

  • Engel, Stacia R.; Dietrich, Fred S.; Fisk, Dianna G.
  • G3: Genes|Genomes|Genetics, Vol. 4, Issue 3
  • DOI: 10.1534/g3.113.008995

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data
journal, September 2016

  • Shen, Xing-Xing; Zhou, Xiaofan; Kominek, Jacek
  • G3: Genes|Genomes|Genetics, Vol. 6, Issue 12
  • DOI: 10.1534/g3.116.034744

Confidence Limits on Phylogenies: An Approach Using the Bootstrap
journal, July 1985

  • Felsenstein, Joseph
  • Evolution, Vol. 39, Issue 4, p. 783-791
  • DOI: 10.2307/2408678

Comparison of Fermentation and Wines Produced by Inoculation of Hanseniaspora vineae and Saccharomyces cerevisiae
journal, March 2016

  • Lleixà, Jessica; Martín, Valentina; Portillo, María del C.
  • Frontiers in Microbiology, Vol. 7
  • DOI: 10.3389/fmicb.2016.00338

Additional file 6: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma
dataset, November 2016

  • Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia
  • Figshare-Supplementary information for journal article at DOI: 10.1186/s12864-016-3244-7, 1 zip file (1.39 MB)
  • DOI: 10.6084/m9.figshare.c.3618773_d8.v1

Works referencing / citing this record:

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
journal, May 2019