Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
Abstract
Burkholderia sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4–7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into Burkholderia, Caballeronia, Paraburkholderia, and Robbsia is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of Burkholderia s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in Paraburkholderia (which also includes all the N2-fixing legume symbionts) and Caballeronia, while most of the human and animal pathogens are retained in Burkholderia sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related Paraburkholderia rhizoxinica and Paraburkholderia endofungorum, which are both symbionts of the fungal phytopathogen Rhizopus microsporus.
- Authors:
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- Escuela Nacional de Ciencias Biológicas (Mexico)
- Univ. of Pretoria, Pretoria (South Africa)
- Univ. of California, Los Angeles, CA (United States)
- The James Hutton Inst., Dundee (United Kingdom)
- Weber State Univ., Ogden, UT (United States)
- Santa Cruz State Univ., Ilheus (Brazil)
- Embrapa CENARGEN, Distrito Federal (Brazil)
- Embrapa Cerrados, Distrito Federal (Brazil)
- Univ. of Georgia, Athens, GA (United States)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Univ. of Oxford, Oxford (United Kingdom)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1544040
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Genes
- Additional Journal Information:
- Journal Volume: 9; Journal Issue: 8; Journal ID: ISSN 2073-4425
- Publisher:
- MDPI
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Genetics & Heredity; Burkholderia; Paraburkholderia; Caballeronia; Robbsia; Mimosa; Rhizopus; symbionts; diazotrophy; root nodulation
Citation Formats
Estrada-de los Santos, Paulina, Palmer, Marike, Chávez-Ramírez, Belén, Beukes, Chrizelle, Steenkamp, Emma T., Briscoe, Leah, Khan, Noor, Maluk, Marta, Lafos, Marcel, Humm, Ethan, Arrabit, Monique, Crook, Matthew, Gross, Eduardo, Simon, Marcelo F., dos Reis Junior, Fábio, Whitman, William, Shapiro, Nicole, Poole, Philip S., Hirsch, Ann M., Venter, Stephanus N., and James, Euan K. Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. United States: N. p., 2018.
Web. doi:10.3390/genes9080389.
Estrada-de los Santos, Paulina, Palmer, Marike, Chávez-Ramírez, Belén, Beukes, Chrizelle, Steenkamp, Emma T., Briscoe, Leah, Khan, Noor, Maluk, Marta, Lafos, Marcel, Humm, Ethan, Arrabit, Monique, Crook, Matthew, Gross, Eduardo, Simon, Marcelo F., dos Reis Junior, Fábio, Whitman, William, Shapiro, Nicole, Poole, Philip S., Hirsch, Ann M., Venter, Stephanus N., & James, Euan K. Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. United States. https://doi.org/10.3390/genes9080389
Estrada-de los Santos, Paulina, Palmer, Marike, Chávez-Ramírez, Belén, Beukes, Chrizelle, Steenkamp, Emma T., Briscoe, Leah, Khan, Noor, Maluk, Marta, Lafos, Marcel, Humm, Ethan, Arrabit, Monique, Crook, Matthew, Gross, Eduardo, Simon, Marcelo F., dos Reis Junior, Fábio, Whitman, William, Shapiro, Nicole, Poole, Philip S., Hirsch, Ann M., Venter, Stephanus N., and James, Euan K. Wed .
"Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae". United States. https://doi.org/10.3390/genes9080389. https://www.osti.gov/servlets/purl/1544040.
@article{osti_1544040,
title = {Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae},
author = {Estrada-de los Santos, Paulina and Palmer, Marike and Chávez-Ramírez, Belén and Beukes, Chrizelle and Steenkamp, Emma T. and Briscoe, Leah and Khan, Noor and Maluk, Marta and Lafos, Marcel and Humm, Ethan and Arrabit, Monique and Crook, Matthew and Gross, Eduardo and Simon, Marcelo F. and dos Reis Junior, Fábio and Whitman, William and Shapiro, Nicole and Poole, Philip S. and Hirsch, Ann M. and Venter, Stephanus N. and James, Euan K.},
abstractNote = {Burkholderia sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4–7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into Burkholderia, Caballeronia, Paraburkholderia, and Robbsia is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of Burkholderia s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in Paraburkholderia (which also includes all the N2-fixing legume symbionts) and Caballeronia, while most of the human and animal pathogens are retained in Burkholderia sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related Paraburkholderia rhizoxinica and Paraburkholderia endofungorum, which are both symbionts of the fungal phytopathogen Rhizopus microsporus.},
doi = {10.3390/genes9080389},
journal = {Genes},
number = 8,
volume = 9,
place = {United States},
year = {2018},
month = {8}
}
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Figures / Tables:
Table 1: The genome sequencing statistics for Burkholderia sensu lato strains sequenced in this study.
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Works referenced in this record:
Burkholderia species are ancient symbionts of legumes
journal, January 2010
- Bontemps, Cyril; Elliott, Geoffrey N.; Simon, Marcelo F.
- Molecular Ecology, Vol. 19, Issue 1
Shifting the genomic gold standard for the prokaryotic species definition
journal, October 2009
- Richter, Michael; Rosselló-Móra, Ramon
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 45
Extreme genome reduction in symbiotic bacteria
journal, November 2011
- McCutcheon, John P.; Moran, Nancy A.
- Nature Reviews Microbiology, Vol. 10, Issue 1
Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium
journal, August 2017
- Lardi, Martina; de Campos, Samanta Bolzan; Purtschert, Gabriela
- Frontiers in Microbiology, Vol. 8
List of Bacterial Names with Standing in Nomenclature: a Folder Available on the Internet
journal, April 1997
- EuzéBy, J. P.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 47, Issue 2
Diverse pathogenicity of Burkholderia cepacia complex strains in the Caenorhabditis elegans host model
journal, September 2005
- Cardona, Silvia T.; Wopperer, Julia; Eberl, Leo
- FEMS Microbiology Letters, Vol. 250, Issue 1
Burkholderia rhizoxinica sp. nov. and Burkholderia endofungorum sp. nov., bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus
journal, November 2007
- Partida-Martinez, L. P.; Groth, I.; Schmitt, I.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 11
Trimmomatic: a flexible trimmer for Illumina sequence data
journal, April 2014
- Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern
- Bioinformatics, Vol. 30, Issue 15
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
journal, April 2016
- Sayyari, Erfan; Mirarab, Siavash
- Molecular Biology and Evolution, Vol. 33, Issue 7
Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta
journal, October 2006
- Elliott, Geoffrey N.; Chen, Wen-Ming; Chou, Jui-Hsing
- New Phytologist, Vol. 173, Issue 1
Re-evaluating prokaryotic species
journal, August 2005
- Gevers, Dirk; Cohan, Frederick M.; Lawrence, Jeffrey G.
- Nature Reviews Microbiology, Vol. 3, Issue 9
ProtTest: selection of best-fit models of protein evolution
journal, January 2005
- Abascal, F.; Zardoya, R.; Posada, D.
- Bioinformatics, Vol. 21, Issue 9
International Committee on Systematics of Prokaryotes Subcommittee for the Taxonomy of Rhizobium and Agrobacterium Minutes of the meeting, Budapest, 25 August 2016
journal, July 2017
- de Lajudie, Philippe M.; Young, J. Peter W.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 7
The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008
- Aziz, Ramy K.; Bartels, Daniela; Best, Aaron A.
- BMC Genomics, Vol. 9, Issue 1, Article No. 75
Characterization of a substance produced by Azospirillum which causes branching of wheat root hairs
journal, March 1985
- Jain, Devender K.; Patriquin, David G.
- Canadian Journal of Microbiology, Vol. 31, Issue 3
FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies
journal, November 2014
- Kück, Patrick; Longo, Gary C.
- Frontiers in Zoology, Vol. 11, Issue 1
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
journal, October 2007
- Konstantinidis, Konstantinos T.; Tiedje, James M.
- Current Opinion in Microbiology, Vol. 10, Issue 5
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
journal, January 2014
- Stamatakis, Alexandros
- Bioinformatics, Vol. 30, Issue 9
Prokka: rapid prokaryotic genome annotation
journal, March 2014
- Seemann, T.
- Bioinformatics, Vol. 30, Issue 14
Burkholderia, a Genus Rich in Plant-Associated Nitrogen Fixers with Wide Environmental and Geographic Distribution
journal, June 2001
- Estrada-De Los Santos, P.; Bustillos-Cristales, R.; Caballero-Mellado, J.
- Applied and Environmental Microbiology, Vol. 67, Issue 6
EDGAR 2.0: an enhanced software platform for comparative gene content analyses
journal, April 2016
- Blom, Jochen; Kreis, Julian; Spänig, Sebastian
- Nucleic Acids Research, Vol. 44, Issue W1
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
journal, May 2012
- Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry
- Journal of Computational Biology, Vol. 19, Issue 5
ModelFinder: fast model selection for accurate phylogenetic estimates
journal, May 2017
- Kalyaanamoorthy, Subha; Minh, Bui Quang; Wong, Thomas K. F.
- Nature Methods, Vol. 14, Issue 6
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4 T is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72 : Genomic analysis of
journal, January 2017
- Faoro, Helisson; Rene Menegazzo, Rodrigo; Battistoni, Federico
- Environmental Microbiology Reports, Vol. 9, Issue 3
Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia
journal, August 2016
- Dobritsa, Anatoly P.; Samadpour, Mansour
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 8
Phylogenetic Analysis of Burkholderia Species by Multilocus Sequence Analysis
journal, February 2013
- Estrada-de los Santos, Paulina; Vinuesa, Pablo; Martínez-Aguilar, Lourdes
- Current Microbiology, Vol. 67, Issue 1
The KEGG databases at GenomeNet
journal, January 2002
- Kanehisa, M.
- Nucleic Acids Research, Vol. 30, Issue 1
Biogeographical Patterns of Legume-Nodulating Burkholderia spp.: from African Fynbos to Continental Scales
journal, June 2016
- Lemaire, Benny; Chimphango, Samson B. M.; Stirton, Charles
- Applied and Environmental Microbiology, Vol. 82, Issue 17
Pathogenic fungus harbours endosymbiotic bacteria for toxin production
journal, October 2005
- Partida-Martinez, Laila P.; Hertweck, Christian
- Nature, Vol. 437, Issue 7060
Proposal of Burkholderia gen. nov. and Transfer of Seven Species of the Genus Pseudomonas Homology Group II to the New Genus, with the Type Species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov.
journal, December 1992
- Yabuuchi, Eiko; Kosako, Yoshimasa; Oyaizu, Hiroshi
- Microbiology and Immunology, Vol. 36, Issue 12
Reassessment of the taxonomic position of Burkholderia andropogonis and description of Robbsia andropogonis gen. nov., comb. nov.
journal, February 2017
- Lopes-Santos, Lucilene; Castro, Daniel Bedo Assumpção; Ferreira-Tonin, Mariana
- Antonie van Leeuwenhoek, Vol. 110, Issue 6
ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
journal, September 2016
- Yu, Guangchuang; Smith, David K.; Zhu, Huachen
- Methods in Ecology and Evolution, Vol. 8, Issue 1
MUSCLE: multiple sequence alignment with high accuracy and high throughput
journal, March 2004
- Edgar, R. C.
- Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797
Burkholderia dabaoshanensis sp. nov., a Heavy-Metal-Tolerant Bacteria Isolated from Dabaoshan Mining Area Soil in China
journal, December 2012
- Zhu, Honghui; Guo, Jianhua; Chen, Meibiao
- PLoS ONE, Vol. 7, Issue 12
Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species
journal, December 2014
- Sawana, Amandeep; Adeolu, Mobolaji; Gupta, Radhey S.
- Frontiers in Genetics, Vol. 5
Burkholderia symbiotica sp. nov., isolated from root nodules of Mimosa spp. native to north-east Brazil
journal, November 2011
- Sheu, S. -Y.; Chou, J. -H.; Bontemps, C.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 9
Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome
journal, May 2011
- Lackner, Gerald; Moebius, Nadine; Partida-Martinez, Laila P.
- BMC Genomics, Vol. 12, Issue 1
Paraburkholderia nodosa is the main N 2 -fixing species trapped by promiscuous common bean ( Phaseolus vulgaris L.) in the Brazilian ‘Cerradão’
journal, May 2016
- Dall'Agnol, Rebeca F.; Plotegher, Fábio; Souza, Renata C.
- FEMS Microbiology Ecology, Vol. 92, Issue 8
Lifestyle evolution in symbiotic bacteria: insights from genomics
journal, August 2000
- Moran, Nancy A.; Wernegreen, Jennifer J.
- Trends in Ecology & Evolution, Vol. 15, Issue 8
Burkholderia phymatum Strains Capable of Nodulating Phaseolus vulgaris Are Present in Moroccan Soils
journal, May 2010
- Talbi, C.; Delgado, M. J.; Girard, L.
- Applied and Environmental Microbiology, Vol. 76, Issue 13
Plant-Associated Symbiotic Burkholderia Species Lack Hallmark Strategies Required in Mammalian Pathogenesis
journal, January 2014
- Angus, Annette A.; Agapakis, Christina M.; Fong, Stephanie
- PLoS ONE, Vol. 9, Issue 1
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
journal, June 2017
- Beukes, Chrizelle W.; Palmer, Marike; Manyaka, Puseletso
- Frontiers in Microbiology, Vol. 8
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
journal, June 2015
- Mirarab, Siavash; Warnow, Tandy
- Bioinformatics, Vol. 31, Issue 12
Legume-Nodulating Betaproteobacteria: Diversity, Host Range, and Future Prospects
journal, November 2011
- Gyaneshwar, Prasad; Hirsch, Ann M.; Moulin, Lionel
- Molecular Plant-Microbe Interactions, Vol. 24, Issue 11
Members of the genus Burkholderia: good and bad guys
journal, January 2016
- Eberl, Leo; Vandamme, Peter
- F1000Research, Vol. 5
Bypassing Cultivation To Identify Bacterial Species: Culture-independent genomic approaches identify credibly distinct clusters, avoid cultivation bias, and provide true insights into microbial species
journal, March 2014
- Rodriguez-R, Luis M.; Konstantinidis, Konstantinos T.
- Microbe Magazine, Vol. 9, Issue 3
Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes
journal, August 2016
- De Meyer, Sofie E.; Briscoe, Leah; Martínez-Hidalgo, Pilar
- Molecular Plant-Microbe Interactions, Vol. 29, Issue 8
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
journal, November 2014
- Nguyen, Lam-Tung; Schmidt, Heiko A.; von Haeseler, Arndt
- Molecular Biology and Evolution, Vol. 32, Issue 1
Burkholderia Species Are the Most Common and Preferred Nodulating Symbionts of the Piptadenia Group (Tribe Mimoseae)
journal, May 2013
- Bournaud, Caroline; de Faria, Sergio Miana; dos Santos, José Miguel Ferreira
- PLoS ONE, Vol. 8, Issue 5
To split or not to split: an opinion on dividing the genus Burkholderia
journal, December 2015
- Estrada-de los Santos, Paulina; Rojas-Rojas, Fernando Uriel; Tapia-García, Erika Yanet
- Annals of Microbiology, Vol. 66, Issue 3
Polyphasic Taxonomy in the Genus Burkholderia Leading to an Emended Description of the Genus and Proposition of Burkholderia vietnamiensis sp. nov. for N2-Fixing Isolates from Rice in Vietnam
journal, April 1995
- Gillis, M.; Van Van, T.; Bardin, R.
- International Journal of Systematic Bacteriology, Vol. 45, Issue 2
Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species
journal, March 2014
- Moulin, Lionel; Klonowska, Agnieszka; Caroline, Bournaud
- Standards in Genomic Sciences, Vol. 9, Issue 3
Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp.
journal, March 2012
- Sheu, S. -Y.; Chou, J. -H.; Bontemps, C.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
Towards a Genome-Based Taxonomy for Prokaryotes
journal, September 2005
- Konstantinidis, K. T.; Tiedje, J. M.
- Journal of Bacteriology, Vol. 187, Issue 18
The Tomato Rhizosphere, an Environment Rich in Nitrogen-Fixing Burkholderia Species with Capabilities of Interest for Agriculture and Bioremediation
journal, June 2007
- Caballero-Mellado, J.; Onofre-Lemus, J.; Estrada-de los Santos, P.
- Applied and Environmental Microbiology, Vol. 73, Issue 16
Burkholderia soli sp. nov., isolated from soil cultivated with Korean ginseng
journal, January 2007
- Yoo, S. -H.; Kim, B. -Y.; Weon, H. -Y.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 1
Biosafety Test for Plant Growth-Promoting Bacteria: Proposed Environmental and Human Safety Index (EHSI) Protocol
journal, January 2016
- Vílchez, Juan I.; Navas, Alfonso; González-López, Jesús
- Frontiers in Microbiology, Vol. 6
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
journal, March 2016
- Kumar, Sudhir; Stecher, Glen; Tamura, Koichiro
- Molecular Biology and Evolution, Vol. 33, Issue 7
Genome-Based Characterization of Biological Processes That Differentiate Closely Related Bacteria
journal, February 2018
- Palmer, Marike; Steenkamp, Emma T.; Coetzee, Martin P. A.
- Frontiers in Microbiology, Vol. 9
Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia
journal, August 2011
- Suárez-Moreno, Zulma Rocío; Caballero-Mellado, Jesús; Coutinho, Bruna G.
- Microbial Ecology, Vol. 63, Issue 2
Burkholderia sp. Induces Functional Nodules on the South African Invasive Legume Dipogon lignosus (Phaseoleae) in New Zealand Soils
journal, May 2014
- Liu, Wendy Y. Y.; Ridgway, Hayley J.; James, Trevor K.
- Microbial Ecology, Vol. 68, Issue 3
Accelerated evolution and Muller's rachet in endosymbiotic bacteria.
journal, April 1996
- Moran, N. A.
- Proceedings of the National Academy of Sciences, Vol. 93, Issue 7
APE: Analyses of Phylogenetics and Evolution in R language
journal, January 2004
- Paradis, E.; Claude, J.; Strimmer, K.
- Bioinformatics, Vol. 20, Issue 2
Diazotrophic Burkholderia species isolated from the Amazon region exhibit phenotypical, functional and genetic diversity
journal, June 2012
- da Silva, Krisle; de Souza Cassetari, Alice; Silva Lima, Adriana
- Systematic and Applied Microbiology, Vol. 35, Issue 4
Genomic insights that advance the species definition for prokaryotes
journal, February 2005
- Konstantinidis, K. T.; Tiedje, J. M.
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 7
Identification and Onion Pathogenicity of Burkholderia cepacia Complex Isolates from the Onion Rhizosphere and Onion Field Soil
journal, March 2008
- Jacobs, J. L.; Fasi, A. C.; Ramette, A.
- Applied and Environmental Microbiology, Vol. 74, Issue 10
Brazilian species of Calliandra Benth. (tribe Ingeae) are nodulated by diverse strains of Paraburkholderia
journal, May 2018
- Silva, Verônica Cordeiro; Alves, Patricia Alves Casaes; Rhem, Mariana Ferreira Kruschewsky
- Systematic and Applied Microbiology, Vol. 41, Issue 3
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
journal, January 2007
- Klappenbach, Joel A.; Goris, Johan; Vandamme, Peter
- International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 1
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil
journal, April 2010
- dos Reis Jr, Fábio Bueno; Simon, Marcelo F.; Gross, Eduardo
- New Phytologist, Vol. 186, Issue 4
Type III Protein Secretion Systems in Bacterial Pathogens of Animals and Plants
journal, June 1998
- Hueck, Christoph J.
- Microbiology and Molecular Biology Reviews, Vol. 62, Issue 2
A sand fly salivary protein acts as a neutrophil chemoattractant
journal, May 2021
- Guimaraes-Costa, Anderson B.; Shannon, John P.; Waclawiak, Ingrid
- Nature Communications, Vol. 12, Issue 1
An SHR–SCR module specifies legume cortical cell fate to enable nodulation
journal, December 2020
- Dong, Wentao; Zhu, Yayun; Chang, Huizhong
- Nature, Vol. 589, Issue 7843
Draft Genome Sequence of Comamonas aquatilis Strain LK (= CSUR P6418 = CECT 9772), Isolated from the Planarian Schmidtea mediterranea
journal, February 2021
- Kangale, Luis Johnson; Levasseur, Anthony; Raoult, Didier
- Microbiology Resource Announcements, Vol. 10, Issue 5
Draft Genome Sequences of Thelohania contejeani and Cucumispora dikerogammari, Pathogenic Microsporidia of Freshwater Crustaceans
journal, January 2021
- Cormier, Alexandre; Wattier, Rémi; Giraud, Isabelle
- Microbiology Resource Announcements, Vol. 10, Issue 2
Characterization and functional analysis of phytoene synthase gene family in tobacco
journal, January 2021
- Wang, Zhaojun; Zhang, Lin; Dong, Chen
- BMC Plant Biology, Vol. 21, Issue 1
Molecular characterization of lumpy skin disease virus (LSDV) emerged in Bangladesh reveals unique genetic features compared to contemporary field strains
journal, January 2021
- Badhy, Shukes Chandra; Chowdhury, Mohammad Golam Azam; Settypalli, Tirumala Bharani Kumar
- BMC Veterinary Research, Vol. 17, Issue 1
Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium
text, January 2017
- Lardi, Martina; De Campos, Samanta Bolzan; Purtschert, Gabriela
- Frontiers Research Foundation
Identification and Onion Pathogenicity of Burkholderia cepacia Complex Isolates from the Onion Rhizosphere and Onion Field Soil
text, January 2008
- Smith, J. J.; Ramette, Alban Nicolas; Hammerschmidt, R.
- American Society for Microbiology
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
text, January 2014
- Stamatakis, A.
- Karlsruhe
Diverse pathogenicity ofBurkholderia cepaciacomplex strains in theCaenorhabditis eleganshost model
text, January 2005
- Cardona, Silvia T.; Wopperer, Julia; Eberl, Leo
- Oxford University Press
Works referencing / citing this record:
Trinickia dabaoshanensis sp. nov., a new name for a lost species
journal, July 2019
- Estrada-de los Santos, Paulina; Palmer, Marike; Steenkamp, Emma T.
- Archives of Microbiology, Vol. 201, Issue 9
Paraburkholderia guartelaensis sp. nov., a nitrogen-fixing species isolated from nodules of Mimosa gymnas in an ecotone considered as a hotspot of biodiversity in Brazil
journal, August 2019
- Paulitsch, Fabiane; Dall’Agnol, Rebeca Fuzinatto; Delamuta, Jakeline Renata Marçon
- Archives of Microbiology, Vol. 201, Issue 10
Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources
journal, February 2019
- Rojas-Rojas, Fernando Uriel; Sánchez-López, David; Tapia-García, Erika Yanet
- Current Microbiology, Vol. 76, Issue 5
Paraburkholderia strydomiana sp. nov. and Paraburkholderia steynii sp. nov.: rhizobial symbionts of the fynbos legume Hypocalyptus sophoroides
journal, May 2019
- Beukes, Chrizelle W.; Steenkamp, Emma T.; van Zyl, Elritha
- Antonie van Leeuwenhoek, Vol. 112, Issue 9
Structure elucidation and biosynthetic locus of trinickiabactin from the plant pathogenic bacterium Trinickia caryophylli
journal, October 2019
- Jiao, Junjing; Du, Jiayi; Frediansyah, Andri
- The Journal of Antibiotics, Vol. 73, Issue 1
Chromids Aid Genome Expansion and Functional Diversification in the Family Burkholderiaceae
journal, January 2019
- diCenzo, George C.; Mengoni, Alessio; Perrin, Elena
- Molecular Biology and Evolution, Vol. 36, Issue 3
List of new names and new combinations previously effectively, but not validly, published
journal, April 2015
- Oren, Aharon; Garrity, George M.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue Pt_4
Trinickia dinghuensis sp. nov. and Trinickia fusca sp. nov., isolated from forest soil
journal, May 2019
- Gao, Zeng-hong; Zhong, Shu-fen; Qin, Yi-ning
- International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 5
Paraburkholderia dinghuensis sp. nov., isolated from soil
journal, June 2019
- Fu, Jia-cheng; Lv, Ying-ying; You, Jia
- International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 6
Minimal standards for the description of new genera and species of rhizobia and agrobacteria
journal, July 2019
- de Lajudie, Philippe M.; Andrews, Mitchell; Ardley, Julie
- International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 7
Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies
journal, July 2019
- Dobritsa, Anatoly P.; Samadpour, Mansour
- International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 7
Paraburkholderia pallida sp. nov. and Paraburkholderia silviterrae sp. nov., isolated from forest soil
journal, December 2019
- Xiao, Sen-yang; Gao, Zeng-hong; Lin, Qin-hua
- International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 12
Pararobbsia silviterrae gen. nov., sp. nov., isolated from forest soil and reclassification of Burkholderia alpina as Pararobbsia alpina comb. nov.
journal, February 2020
- Lin, Qin-hua; Lv, Ying-ying; Gao, Zeng-hong
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 2
Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil
journal, March 2020
- Wilhelm, Roland C.; Murphy, Sean J. L.; Feriancek, Nicole M.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3
The Genome Sequences of Three Paraburkholderia sp. Strains Isolated from Wood-Decay Fungi Reveal Them as Novel Species with Antimicrobial Biosynthetic Potential
journal, August 2019
- Webster, Gordon; Mullins, Alex J.; Bettridge, Aimee S.
- Microbiology Resource Announcements, Vol. 8, Issue 34
Engineering root microbiomes for healthier crops and soils using beneficial, environmentally safe bacteria
journal, February 2019
- Martínez-Hidalgo, Pilar; Maymon, Maskit; Pule-Meulenberg, Flora
- Canadian Journal of Microbiology, Vol. 65, Issue 2
Genomic analyses of Burkholderia cenocepacia reveal multiple species with differential host-adaptation to plants and humans
journal, November 2019
- Wallner, Adrian; King, Eoghan; Ngonkeu, Eddy L. M.
- BMC Genomics, Vol. 20, Issue 1
Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status
journal, March 2020
- Jin, Yuan; Zhou, Jianglin; Zhou, Jing
- Biology Direct, Vol. 15, Issue 1
Both Alpha- and Beta-Rhizobia Occupy the Root Nodules of Vachellia karroo in South Africa
journal, June 2019
- Beukes, Chrizelle W.; Boshoff, Francois S.; Phalane, Francina L.
- Frontiers in Microbiology, Vol. 10
A Genomotaxonomy View of the Bradyrhizobium Genus
journal, June 2019
- Ormeño-Orrillo, Ernesto; Martínez-Romero, Esperanza
- Frontiers in Microbiology, Vol. 10
Deciphering the Symbiotic Plant Microbiome: Translating the Most Recent Discoveries on Rhizobia for the Improvement of Agricultural Practices in Metal-Contaminated and High Saline Lands
journal, September 2019
- Bellabarba, Agnese; Fagorzi, Camilla; diCenzo, George C.
- Agronomy, Vol. 9, Issue 9
Horizontal Transfer of Symbiosis Genes within and Between Rhizobial Genera: Occurrence and Importance
journal, June 2018
- Andrews, Mitchell; De Meyer, Sofie; James, Euan
- Genes, Vol. 9, Issue 7
Genomic Features and Insights into the Taxonomy, Virulence, and Benevolence of Plant-Associated Burkholderia Species
journal, December 2018
- Mannaa, Mohamed; Park, Inmyoung; Seo, Young-Su
- International Journal of Molecular Sciences, Vol. 20, Issue 1
Potential of Novel Sequence Type of Burkholderia cenocepacia for Biological Control of Root Rot of Maize (Zea mays L.) Caused by Fusarium temperatum
journal, February 2019
- Tagele, Setu; Kim, Sang; Lee, Hyun
- International Journal of Molecular Sciences, Vol. 20, Issue 5
List of new names and new combinations previously effectively, but not validly, published
journal, March 2020
- Oren, Aharon; Garrity, George
- International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 3
Impact of Soil Salinity on the Cowpea Nodule-Microbiome and the Isolation of Halotolerant PGPR Strains to Promote Plant Growth under Salinity Stress
journal, January 2020
- Mukhtar, Salma; Hirsch, Ann M.; Khan, Noor
- Phytobiomes Journal, Vol. 4, Issue 4
List of new names and new combinations previously effectively, but not validly, published
journal, November 2017
- Oren, Aharon; Garrity, George M.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 11
List of new names and new combinations previously effectively, but not validly, published
journal, July 2019
- Oren, Aharon; Garrity, George M.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 69, Issue 7
List of new names and new combinations previously effectively, but not validly, published
journal, September 2013
- Oren, Aharon; Garrity, George M.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 63, Issue Pt_9
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