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Title: Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera ( Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae

Abstract

Burkholderia sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4–7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into Burkholderia, Caballeronia, Paraburkholderia, and Robbsia is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of Burkholderia s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in Paraburkholderia (which also includes all the N 2-fixing legume symbionts) and Caballeronia, while most of the human and animal pathogens are retained in Burkholderia sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related Paraburkholderia rhizoxinica and Paraburkholderia endofungorum, which are both symbionts of the fungal phytopathogen Rhizopus microsporus.

Authors:
 [1];  [2];  [1];  [2];  [2];  [3];  [3];  [4];  [4];  [3];  [3];  [5];  [6];  [7];  [8];  [9];  [10];  [11];  [3];  [2] more »;  [4] « less
+ Show Author Affiliations
  1. Escuela Nacional de Ciencias Biológicas (Mexico)
  2. Univ. of Pretoria, Pretoria (South Africa)
  3. Univ. of California, Los Angeles, CA (United States)
  4. The James Hutton Inst., Dundee (United Kingdom)
  5. Weber State Univ., Ogden, UT (United States)
  6. Santa Cruz State Univ., Ilheus (Brazil)
  7. Embrapa CENARGEN, Distrito Federal (Brazil)
  8. Embrapa Cerrados, Distrito Federal (Brazil)
  9. Univ. of Georgia, Athens, GA (United States)
  10. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  11. Univ. of Oxford, Oxford (United Kingdom)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1544040
Grant/Contract Number:  
[AC02-05CH11231]
Resource Type:
Accepted Manuscript
Journal Name:
Genes
Additional Journal Information:
[ Journal Volume: 9; Journal Issue: 8]; Journal ID: ISSN 2073-4425
Publisher:
MDPI
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Genetics & Heredity; Burkholderia; Paraburkholderia; Caballeronia; Robbsia; Mimosa; Rhizopus; symbionts; diazotrophy; root nodulation

Citation Formats

Estrada-de los Santos, Paulina, Palmer, Marike, Chávez-Ramírez, Belén, Beukes, Chrizelle, Steenkamp, Emma T., Briscoe, Leah, Khan, Noor, Maluk, Marta, Lafos, Marcel, Humm, Ethan, Arrabit, Monique, Crook, Matthew, Gross, Eduardo, Simon, Marcelo F., dos Reis Junior, Fábio, Whitman, William, Shapiro, Nicole, Poole, Philip S., Hirsch, Ann M., Venter, Stephanus N., and James, Euan K. Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. United States: N. p., 2018. Web. doi:10.3390/genes9080389.
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Estrada-de los Santos, Paulina, Palmer, Marike, Chávez-Ramírez, Belén, Beukes, Chrizelle, Steenkamp, Emma T., Briscoe, Leah, Khan, Noor, Maluk, Marta, Lafos, Marcel, Humm, Ethan, Arrabit, Monique, Crook, Matthew, Gross, Eduardo, Simon, Marcelo F., dos Reis Junior, Fábio, Whitman, William, Shapiro, Nicole, Poole, Philip S., Hirsch, Ann M., Venter, Stephanus N., & James, Euan K. Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. United States. doi:10.3390/genes9080389.
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Estrada-de los Santos, Paulina, Palmer, Marike, Chávez-Ramírez, Belén, Beukes, Chrizelle, Steenkamp, Emma T., Briscoe, Leah, Khan, Noor, Maluk, Marta, Lafos, Marcel, Humm, Ethan, Arrabit, Monique, Crook, Matthew, Gross, Eduardo, Simon, Marcelo F., dos Reis Junior, Fábio, Whitman, William, Shapiro, Nicole, Poole, Philip S., Hirsch, Ann M., Venter, Stephanus N., and James, Euan K. Wed . "Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae". United States. doi:10.3390/genes9080389. https://www.osti.gov/servlets/purl/1544040.
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@article{osti_1544040,
title = {Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae},
author = {Estrada-de los Santos, Paulina and Palmer, Marike and Chávez-Ramírez, Belén and Beukes, Chrizelle and Steenkamp, Emma T. and Briscoe, Leah and Khan, Noor and Maluk, Marta and Lafos, Marcel and Humm, Ethan and Arrabit, Monique and Crook, Matthew and Gross, Eduardo and Simon, Marcelo F. and dos Reis Junior, Fábio and Whitman, William and Shapiro, Nicole and Poole, Philip S. and Hirsch, Ann M. and Venter, Stephanus N. and James, Euan K.},
abstractNote = {Burkholderia sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4–7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into Burkholderia, Caballeronia, Paraburkholderia, and Robbsia is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of Burkholderia s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in Paraburkholderia (which also includes all the N2-fixing legume symbionts) and Caballeronia, while most of the human and animal pathogens are retained in Burkholderia sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related Paraburkholderia rhizoxinica and Paraburkholderia endofungorum, which are both symbionts of the fungal phytopathogen Rhizopus microsporus.},
doi = {10.3390/genes9080389},
journal = {Genes},
number = [8],
volume = [9],
place = {United States},
year = {2018},
month = {8}
}
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DOI:  10.3390/genes9080389
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Cited by: 27 works
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Figures / Tables:

Table 1 Table 1: The genome sequencing statistics for Burkholderia sensu lato strains sequenced in this study.
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