|
Twenty-five years of nucleic acid simulations
|
journal
|
June 2013 |
|
Consistent treatment of inter- and intramolecular polarization in molecular mechanics calculations
|
journal
|
October 2002 |
|
On the isotropy of induced multipole moments in heavy ion complexes
|
journal
|
November 2017 |
|
A new energy decomposition scheme for molecular interactions within the Hartree-Fock approximation
|
journal
|
March 1976 |
|
Polarizable force fields for molecular dynamics simulations of biomolecules
|
journal
|
January 2015 |
|
Advanced models for water simulations
|
journal
|
September 2017 |
|
The atomistic simulation of DNA: The atomistic simulation of DNA
|
journal
|
April 2011 |
|
Alchemical prediction of hydration free energies for SAMPL
|
journal
|
December 2011 |
|
Blind prediction of solvation free energies from the SAMPL4 challenge
|
journal
|
March 2014 |
|
Overview of the SAMPL5 host–guest challenge: Are we doing better?
|
journal
|
September 2016 |
|
Molecular polarizabilities calculated with a modified dipole interaction
|
journal
|
August 1981 |
|
Force Fields for Protein Simulations
|
book
|
January 2003 |
|
NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations
|
journal
|
September 2010 |
|
To milliseconds and beyond: challenges in the simulation of protein folding
|
journal
|
February 2013 |
|
New developments in force fields for biomolecular simulations
|
journal
|
April 2018 |
|
Ab Initio Atom–Atom Potentials Using C am CASP: Theory and Application to Many-Body Models for the Pyridine Dimer
|
journal
|
August 2016 |
|
Evaluating Parametrization Protocols for Hydration Free Energy Calculations with the AMOEBA Polarizable Force Field
|
journal
|
July 2016 |
|
Variational Energy Decomposition Analysis of Chemical Bonding. 1. Spin-Pure Analysis of Single Bonds
|
journal
|
September 2016 |
|
Assessing Ion–Water Interactions in the AMOEBA Force Field Using Energy Decomposition Analysis of Electronic Structure Calculations
|
journal
|
October 2016 |
|
A New Method for Treating Drude Polarization in Classical Molecular Simulation
|
journal
|
October 2017 |
|
AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids
|
journal
|
February 2018 |
|
Advanced Potential Energy Surfaces for Molecular Simulation
|
journal
|
August 2016 |
|
Family of Oxygen–Oxygen Radial Distribution Functions for Water
|
journal
|
July 2015 |
|
Accurate Classical Polarization Solution with No Self-Consistent Field Iterations
|
journal
|
April 2017 |
|
Perturbation Theory Approach to Intermolecular Potential Energy Surfaces of van der Waals Complexes
|
journal
|
November 1994 |
|
Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint
|
journal
|
September 1988 |
|
Fragmentation Methods: A Route to Accurate Calculations on Large Systems
|
journal
|
August 2011 |
|
Competition among Metal Ions for Protein Binding Sites: Determinants of Metal Ion Selectivity in Proteins
|
journal
|
September 2013 |
|
Polarizable Atomic Multipole-Based AMOEBA Force Field for Proteins
|
journal
|
August 2013 |
|
Polarizable Force Field for Peptides and Proteins Based on the Classical Drude Oscillator
|
journal
|
November 2013 |
|
Toward a Separate Reproduction of the Contributions to the Hartree−Fock and DFT Intermolecular Interaction Energies by Polarizable Molecular Mechanics with the SIBFA Potential
|
journal
|
March 2007 |
|
A Combined Charge and Energy Decomposition Scheme for Bond Analysis
|
journal
|
March 2009 |
|
Charge equilibration for molecular dynamics simulations
|
journal
|
April 1991 |
|
Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation
|
journal
|
May 2003 |
|
Unravelling the Origin of Intermolecular Interactions Using Absolutely Localized Molecular Orbitals
|
journal
|
September 2007 |
|
Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model
|
journal
|
September 2014 |
|
Current Status of the AMOEBA Polarizable Force Field
|
journal
|
March 2010 |
|
Energy Decomposition Analyses for Many-Body Interaction and Applications to Water Complexes
|
journal
|
January 1996 |
|
Natural Energy Decomposition Analysis: The Linear Response Electrical Self Energy
|
journal
|
January 1996 |
|
CHARMM36m: an improved force field for folded and intrinsically disordered proteins
|
journal
|
November 2016 |
|
Energy decomposition analysis approaches and their evaluation on prototypical protein–drug interaction patterns
|
journal
|
January 2015 |
|
A comprehensive review on the molecular dynamics simulation of the novel thermal properties of graphene
|
journal
|
January 2015 |
|
Probing non-covalent interactions with a second generation energy decomposition analysis using absolutely localized molecular orbitals
|
journal
|
January 2016 |
|
Insights from molecular dynamics simulations for computational protein design
|
journal
|
January 2017 |
|
Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields
|
journal
|
January 2018 |
Computational determination of equilibrium geometry and dissociation energy of the water dimer
- Klopper, W.; M. van Duijneveldt-van de Rijdt, J. G. C.; van Duijneveldt, F. B.
-
Physical Chemistry Chemical Physics, Vol. 2, Issue 10
https://doi.org/10.1039/a910312k
|
journal
|
January 2000 |
|
ωB97X-V: A 10-parameter, range-separated hybrid, generalized gradient approximation density functional with nonlocal correlation, designed by a survival-of-the-fittest strategy
|
journal
|
January 2014 |
|
Anchoring the water dimer potential energy surface with explicitly correlated computations and focal point analyses
|
journal
|
January 2002 |
|
Magnetic Properties and Molecular Quadrupole Tensor of the Water Molecule by Beam‐Maser Zeeman Spectroscopy
|
journal
|
March 1970 |
|
Dipole moment of water from Stark measurements of H 2 O, HDO, and D 2 O
|
journal
|
September 1973 |
|
Intermolecular potentials based on symmetry-adapted perturbation theory with dispersion energies from time-dependent density-functional calculations
|
journal
|
December 2005 |
|
Distributed polarizabilities obtained using a constrained density-fitting algorithm
|
journal
|
January 2006 |
|
Towards a force field based on density fitting
|
journal
|
March 2006 |
|
Generalization of the Gaussian electrostatic model: Extension to arbitrary angular momentum, distributed multipoles, and speedup with reciprocal space methods
|
journal
|
November 2006 |
|
Energy decomposition analysis of covalent bonds and intermolecular interactions
|
journal
|
July 2009 |
|
Property-optimized Gaussian basis sets for molecular response calculations
|
journal
|
October 2010 |
|
The Rayleigh depolarization ratio and rotational Raman spectrum of water vapor and the polarizability components for the water molecule
|
journal
|
December 1977 |
|
Studies of molecular association in H 2 O and D 2 O vapors by measurement of thermal conductivity
|
journal
|
September 1979 |
|
Partially deuterated water dimers: Microwave spectra and structure
|
journal
|
May 1980 |
|
Benchmark oxygen-oxygen pair-distribution function of ambient water from x-ray diffraction measurements with a wide Q -range
|
journal
|
February 2013 |
|
Structures, energies, vibrational spectra, and electronic properties of water monomer to decamer
|
journal
|
June 2000 |
|
An efficient and stable hybrid extended Lagrangian/self-consistent field scheme for solving classical mutual induction
|
journal
|
November 2015 |
|
Defining the contributions of permanent electrostatics, Pauli repulsion, and dispersion in density functional theory calculations of intermolecular interaction energies
|
journal
|
March 2016 |
|
Study of interactions between metal ions and protein model compounds by energy decomposition analyses and the AMOEBA force field
|
journal
|
October 2017 |
|
Assessing many-body contributions to intermolecular interactions of the AMOEBA force field using energy decomposition analysis of electronic structure calculations
|
journal
|
October 2017 |
|
Advances in molecular quantum chemistry contained in the Q-Chem 4 program package
|
journal
|
September 2014 |
|
Molecular dynamics simulations and novel drug discovery
|
journal
|
October 2017 |
|
The Radial Distribution Functions of Water as Derived from Radiation Total Scattering Experiments: Is There Anything We Can Say for Sure?
|
journal
|
January 2013 |